LOC120562701


Basic Information

Item Value
gene id LOC120562701
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19614503 ~ 19625611 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639810.1
TTTAGAACAGATGttagtatttttaaaaaaacgtcACGTGAAACGAGCAGATGTTCAGACTGTGCAGAGACTCGCCGTGCAGCGCAttactgcagagagagagagagctcggAGGAGCTTTGCTTCCACACAGACTGTGAGTCTGCAGTCCTACATTAAAATCATCCAGCAGGTTTGATTAAAATGGATTAATAAAAAGGGCCACCTGCAGGGAGTAACAGGATCTGGAGCTGACTGTACGCGCTGAGACAAAGCAGGAGCGTCGGTGCCTTATCACACGAGGCGTCAGGATCCTTCAGTCCACCGACAGAGGAGCCACCTGGTCAGATGACCACAACCATgacatcaacaacaacagcaacaatatgaaaaacaaGTGACTGACACTGAGTGACCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639810.1 True 398 lncRNA 0.48 3 19614503 19625611

Neighbor

gene id symbol gene type direction distance location
twist1b twist1,LOC100712142,LOC103366955 coding upstream 1351 19611746 ~ 19613152 (+)
macc1 macc1 coding upstream 19148 19590103 ~ 19595355 (+)
sp8b sp8,LOC101158882,LOC104926695,LOC101468530,LOC107378685 coding upstream 31749 19577552 ~ 19582754 (+)
LOC120562733 LOC100705529,LOC103366949,LOC102296000 coding upstream 137187 19459555 ~ 19477316 (+)
LOC120561621 LOC105018833 coding upstream 168386 19440837 ~ 19446117 (+)
ankrd28b ankrd28 coding downstream 49532 19675143 ~ 19693798 (+)
hacl1 hacl1 coding downstream 69304 19694915 ~ 19700987 (+)
colq colq,LOC103374283 coding downstream 75469 19701080 ~ 19710338 (+)
fkbp14 fkbp14,LOC102795884 coding downstream 97797 19723408 ~ 19725265 (+)
cpvl cpvl,LOC102795305 coding downstream 128089 19753700 ~ 19760022 (+)
LOC120562732 NA non-coding upstream 157887 19453769 ~ 19456616 (+)
G73606 NA non-coding upstream 294455 19319438 ~ 19320048 (+)
G73586 csnk2b,LOC102207154,LOC106573472,LOC101175345,LOC104925497,LOC102778826 non-coding upstream 337987 19272727 ~ 19276516 (+)
LOC120562631 fxyd7,LOC103388498 non-coding upstream 451699 19159464 ~ 19162804 (+)
LOC120562629 NA non-coding upstream 455485 19158475 ~ 19159018 (+)
G73776 hdac9 non-coding downstream 9262 19634873 ~ 19639459 (+)
G73836 NA non-coding downstream 194624 19820235 ~ 19820591 (+)
G73871 NA non-coding downstream 393498 20019109 ~ 20052006 (+)
G73881 NA non-coding downstream 415260 20040871 ~ 20046380 (+)
G74067 NA non-coding downstream 688873 20314484 ~ 20318117 (+)
si:ch211-254p10.2 LOC102209663,LOC101158134,LOC102295699,LOC101064473 other upstream 161220 19447167 ~ 19453283 (+)
hcst LOC104925504,LOC104961397 other upstream 422401 19190020 ~ 19192102 (+)
G73570 LOC103371659 other upstream 455508 19148613 ~ 19158995 (+)
kmt2bb kmt2b other upstream 752545 18833245 ~ 18861958 (+)
proser3 NA other upstream 785815 18819201 ~ 18828688 (+)
G73779 hdac9 other downstream 21364 19646975 ~ 19649511 (+)
LOC120561838 tppp other downstream 567079 20192690 ~ 20209327 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other downstream 588977 20214588 ~ 20226991 (+)
gra NA other downstream 696719 20322330 ~ 20325961 (+)
glipr2l glipr2 other downstream 974712 20600323 ~ 20605165 (+)

Expression


Co-expression Network