LOC120562862


Basic Information

Item Value
gene id LOC120562862
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 26576712 ~ 26600111 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639858.1
tcaCGGGTGTGACCTGCTGGAGgagagtttagtttttttagtaCTTTTTATGCTGTGCAGAAGTTAGCTGTTTAATTTGAAATTAATTCTATAAGGATCTTCCTCATGAccttgaagtttttttttaacagtggaaACACTTTTTTCCTGGAGGTGGCTCAAGTTTCCCAAAATACCACACATGAAAGGCAGTAGATGTCACCAGTTCATAATGGGGCCAATCCAGATAAACGGTAATTCAAACCAAAGGGCAATTTCCTCTCCAATCAACCTGCACGTTTTGGACTATGGAAGGACACTGgaaagaataaatataaagGACAATTggctgtgaaaaacaaaaataacccCAAAAAAAGAGGGTGCGAGTGAAATGAGGCATTCAAATGCCCCTCCGAATACAGCAGTGGATCGAGAAAGACTGCCCCAAAGACAGAAGAGCAACATTTTACAAACAGCTGCACAGTGCCATCTAGAGGTCCCTCAGGCAACAGTGGAGGGGATAAAAGTGAAGAGAGGCAGCCCGAAACTGAGTCTCGCGCAGGTGTCGTCCACATTTCTGCAGGTGTGCATTCTGGGTATCAGATGGTGAGAGGTGATATCTGTCTCCAGCACATGCACACGCTCTGATCCTCTGCAGCTGAAAAG
>XR_005639859.1
tcaCGGGTGTGACCTGCTGGAGgagagtttagtttttttagtaCTTTTTATGCTGTGCAGAAGTTAGCTGTTTAATTTGAAATTAATTCTATAAGGATCTTCCTCATGAccttgaagtttttttttaacagtggaaACACTTTTTTCCTGGAGGTGGCTCAAGTTTCCCAAAATACCACACATGAAAGGCAGTAGATGTCACCAGTTCATAATGGGGCCAATCCAGATAAACGGTAATTCAAACCAAAGGGCAATTTCCTCTCCAATCAACCTGCACGTTTTGGACTATGGAAGGACACTGgaaagaataaatataaagAGCTTCTTCTGGGTTGAATCTGCTGGTTAAACTGGATGTTGCGTTTATGTTTGAACACAGAAAACTTACTTGCTTTGTAATGATCTGGT
>XR_005639860.1
tcaCGGGTGTGACCTGCTGGAGgagagtttagtttttttagtaCTTTTTATGCTGTGCAGAAGTTAGCTGTTTAATTTGAAATTAATTCTATAAGGATCTTCCTCATGAccttgaagtttttttttaacagtggaaACACTTTTTTCCTGGAGGTGGCTCAAGTTTCCCAAAATACCACACATGAAAGGCAGTAGATGTCACCAGTTCATAATGGGGCCAATCCAGATAAACGGTAATTCAAACCAAAGGGCAATTTCCTCTCCAATCAACCTGCACGTTTTGGACTATGGAAGGACACTGgaaagaataaatataaagGTTGTGCCCACGCAGAGCGGTGCAGAACGCCAGCTGGGAACATCCTGTCTTAGGCGACAGGAACATCAGACGCGACAGATGGCTCATAAATCATGGAAGTGCGTGCACAGTGTCGATGGGAGGCCTTCCTCTGGAGAGCACACTGTGAGCAGGTGGGCAGAGGGAGCATCAGCTCAGCAACATGAGCCCTGGACGCATTACCACTCTGACTGGGAAACTGCCTAGTGTCACAGAGGCAGAATCAGGAGGGAAAACACGGAGGACTGCTTCCGCAGTGTCACAATGTTCGCTCTCAGCCAGCTCGTGTCTCAACACTTTAAGGTGTGATTTCATAGTGTGCAAGAACTTGTATTTTGATTGTGTCTTATTAGGATGTATCAGTTTAGAACTAGGCATgcataaaggtaaaaaaaattaaataaatgtatagtCTCACTTGCAATGAGCACCATATGGCAGTTCTCACCTAACAAACTGCAACAATTGTTGTACATTAAAACTGATGTAGGATTTAGTTTTCCTATGAATCTAACAAGGATAAGATCCAGAATAAGACAGGTTGAACTTCATGCATAGGGctcattattttctgttttgttgtgtgtggtattaaaaaaaaacaggttaaaaaaagggttaaaaagTATTCAGCAACAAATATCTagtcaaaaaaaactttttaaaaatcacCATTTAAAGAGAAAACACTCCATCCATTGTTTCTTTACACTTACTTAAAGTGACACATAATCAACCGCGCATTCATATTTTCACATTCTTCTATTTAAAAGTTACTTTGTGCCCTGTTTTTCCTTCCCTAACTGTGTTAACTCTTAACTGTAACTACTTGCATCAGTAAACATTTTGGTGCATAAAGACATAAAATCTCCTTTAACCAATCTGCTCCTTTaagaaatgtgtttattgttcagtaaaaaaaaacagaatattgTTAATTAATACTCTAAATTGAAAGTTACATGTTTTACTAttcattaacatgaatccagtttaaaaaaaaatgtagacaaAGGTCATATTTATGTGATTAAGCTCACTTCACTGTATTCTACATCCATTCTCCAGCCATGCTTGGTAAATTGCTTGACTGTGTGCATCATATTTATACTGGTGGACCaagtttgtttatttcatatctGTTGTGAGTTAATTAAAACACCAGCGCATTAATTGATCCTGATATGTTATTCATTCATAGGAAAAGTCATTTTCCTCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639858.1 False 648 lncRNA 0.44 3 26576712 26591023
XR_005639859.1 False 408 lncRNA 0.38 3 26576712 26581378
XR_005639860.1 True 1557 lncRNA 0.38 3 26576712 26600111

Neighbor

gene id symbol gene type direction distance location
LOC120562714 grik3,LOC102778608 coding upstream 149060 26316867 ~ 26427652 (+)
LOC120563082 NA coding upstream 404298 26168464 ~ 26172414 (+)
LOC120561982 maneal,LOC102777073 coding upstream 472028 26088953 ~ 26104684 (+)
smpdl3b smpdl3b coding upstream 508358 26065023 ~ 26068354 (+)
themis2 NA coding upstream 518281 26050653 ~ 26058431 (+)
LOC120562650 NA coding downstream 11875 26611986 ~ 26613382 (+)
csf3r NA coding downstream 22236 26622347 ~ 26634300 (+)
mrps15 mrps15,LOC102779357 coding downstream 35566 26635677 ~ 26644227 (+)
oscp1b oscp1,LOC106583166,LOC102779645 coding downstream 48101 26648212 ~ 26655099 (+)
stk40 stk40,LOC103141542 coding downstream 56842 26656953 ~ 26675492 (+)
G76251 NA non-coding upstream 290212 26286300 ~ 26286500 (+)
G76246 NA non-coding upstream 361347 26215081 ~ 26215365 (+)
LOC120563083 NA non-coding upstream 409025 26155861 ~ 26167687 (+)
G76193 NA non-coding upstream 423409 26151993 ~ 26153303 (+)
G76180 NA non-coding upstream 464207 26110603 ~ 26112505 (+)
G76276 NA non-coding downstream 76884 26676995 ~ 26677217 (+)
G76313 NA non-coding downstream 131195 26731306 ~ 26732902 (+)
G76338 NA non-coding downstream 264609 26864720 ~ 26865555 (+)
G76393 NA non-coding downstream 415029 27015140 ~ 27016107 (+)
G76412 NA non-coding downstream 456672 27056783 ~ 27057005 (+)
G76192 NA other upstream 434085 26139901 ~ 26142627 (+)
taf12 taf12 other upstream 781193 25792818 ~ 25795519 (+)
apoc2 NA other upstream 1072660 25502600 ~ 25504052 (+)
apoc1 NA other upstream 1083450 25491784 ~ 25493262 (+)
LOC120561674 LOC104943405,LOC103477911,LOC108235491,LOC108235490,LOC102233864,LOC107379681 other upstream 1195914 25374207 ~ 25380798 (+)
LOC120562432 LOC101064911,LOC106524684,LOC104919574,LOC106098620,LOC102206486,LOC108235477,LOC102229209,LOC108166993 other downstream 45273 26645384 ~ 26647615 (+)
G76315 NA other downstream 208007 26808118 ~ 26815391 (+)
G76355 snip1 other downstream 283339 26883450 ~ 26886546 (+)
G76417 NA other downstream 684427 27284538 ~ 27288457 (+)
fam110d LOC104924711,LOC103367059 other downstream 1267333 27867444 ~ 27885464 (+)

Expression


Co-expression Network