LOC120564180


Basic Information

Item Value
gene id LOC120564180
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 52479 ~ 65878 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU108649
AGTCCGAGCTGtctgatgactgggatgcaggatggaatggagtagttgcgaagttggaccagttgcagagttgaatatttgatcatgatgccgagcGGAGGGACTGAGAGCTCCGTGATAGCGGTTAGCCatgggctaggagcacagaggtggatgAATGAGGTGAGTGCCAGAATGATCCACGGCATGACAGgaggagaggaatgtctagtcttggtcgcgGCTCGCATCTTGTGGAGGTTGCCTGTGAGAaggaggtcagcaatcgggttagccGCTGTAGCAGCTAGGATTAGCCGCCACGCAtttggtgaacgggggcagccagctagcggctaaccgacgaggcaagagtccggtcaaggagcccAGGCGGCTTCGGGAACCAGCTGAGAGACTGTCCAagggtacagaggctgtccagaggtagggggtacagcgaacacaaacacacaagagaatagcagacggagaagcggcgaataaccagcgccagcgtcctctcacgtcAATGACACTACTGTGCCTTTAGGGCTCAAAgggttaaaacaaaaacagtgacagagacagaagattaggaaaattaggaatatcctgtctcaaaacgatgctgaaaaactaatccatgcatttgttacttccaggctggactattgtaattccctactgtcaggttgctcaaataagtcccttaagactctccagctgatccagaatgctgcagcacgtgttctgacgagaactaagaaaagagatcatatttctcctgttttagctactctgcattggcttcctgtaaaattcagggttgactttaaagtccttctcctgacctacaaagccctgaatggtcaagcaccatcctatctagaacagctcttagtacgttattgtcccactagagcactgcgctcccagaatgcagagttacttgtggttcctagagtctccaaaagtagaatgggagccagagccttcagctaccaggctcctttcctgtggaaccagctcccagtctgggttaggggggcagacaccatcacctcatttaagagtaaactgaaaactctcctctttgataaagcttatagttaagaagtgaggagttgcagcgtccacctaacccggcccacctgcttctcttcgtagtcatcagatttattgaTCATATAATATCattcaataatatagtgagagtagagggaggcaggccagtacagcctctcatcaatgttttcatttgtttccttttgtatacatcctgtcccagaatagctttttactaatctagctctggggagtttactccccggagtccttatgtttcttcttcgcagagccatgctctgcgattccctgcaacgCCCGGCAGCGTTCTGCTGCgtccgcatccacccatgctctgcagcgccacgtttcatcccgcaacgtcctgctgtaacatgaactacaacgactaccttcaaagtcactgttccactatctttaatgtgactattatcgccactgttcatcacacccccaaccggccccgtcagacaccgcctaccaagagtctgggtctgccaaggtttcttcctaaaagggagtttttccttgccactgtcgcaatagccactgctaatgcttgctcttgagggaattactggaattgttggggctttgtatattatagagtgtggtctagacccactcgatctgtaaagtgtctcgagataactctgttatgatttgatactataaataaaattgaattgaattgaattcaatagagaagtcagctggtggagtctccagaggctggttttagaacgtaatgagagtctcctgtttctacagccaatagagaagtcagctggtggagtctccagaggctggttttagaacgtaagagagtctcctgtttcaacagccaatagagaaatcagctggtggagtctccagaggctggttttagaatgtAAGAGatgtctcctgtttcaacagccaatagacaagtcagctggtggagtctccagaggctggttttagaatgtAAGAGATgtctcctgtttctacagccaatagagaagtcagctagTCGAGTCAGCTAcaaaccatagaaataaaatgatcgaGAATCCATTTTAATGTCTGTGTTACAAGCTGTCAGCTGGTGGAAATGTCAGAGTTTAAAACGGAGGCTCAATGAGCTAGACAGCACGGTATGTGGTGGAATGGGTTAGGGAGAGACTGAAGACAGGGATTGGCATCAGAACAAAACagagaatcagagaaataaaacattgttttctCTACTTCATCTCTACTAGAAATGCAGCTATGGTATCTTACTATCACAATCctcattagggcccgagcgccgacagcggcgaaggccctattgaaactgaaggaattattgtttctttctttctttctttctattattttcccgtcaaatgaattgcctttttgaggggcttaacatattcaaaaactcaccacatttggcggtcgcatcaagtctggtgaaaatatacgtattttaagggtttcgggaataggcgcacaaaaatggctcgctagcgccccctagaaagttaagaaaattgagctcctgcagtgcgtttaatgtagactcacgaaacttggtacacatatgtaccatgtcaagatgtacaaaaattTTGTacagccattttgtgcgtttagccgccgaaacaggaagtgggtgtaactcgagtgtacgttgtccgattacctcgaaacttttcacgattcataagagtccaacccttaggacaaataaaggccgatatttacttaaagtcatagcgccccctagtagcaacaggaagtaggcctaaaagtcaaggtgctatactttaacgaactcctcctagagatttcatccgatggacttcaaacttggtctgtaccatcccaacaccttatcgatgaaaagttattaaaagaaaaacttttcgttaGACGGTGtaggcgtggcgtggcggccattttgagtgtttggcgatgaacaaagaagttgttgtaacttgagtgtacgttgtcgtatctgcccgaaatttctcacgatggacaagggtccagacCTGAGGaaacctacaggccaaaatttcCTTTTGGTCATAGTGTcccccctggccacaggaaatctgccttatatgacaaacatcatccgatttacatgaaacttatgtgtggtctacatgtgatactgagccagccctataatatgaccatgcccacttactcaggccacgccccctttcataacatttgaaccgtttaaggtagagtcttgtgtgaggtgtcattgaactcagcagagacttcatttttaattggtgatggtttggcccgccccctatgtttaatccacgccccctttcttaaaatttgaaccgtttaagatagacccttgtgtgaggtatcattgaactcagcacagacttcctttttaattggttatggtttgacccgccccctatgctttagccatgccctctttcacagctgatgaaccgtatgacgtagagtcttgtgtgaggtatcatggTATTCCCTTtccattggtgacgatttgtggtgtctgagtgccgagcGAATGAacagtcgcaaggagcggcgtctgcCAGTAACCGCGACGCGCGGAGaggtgcgagggcccgtccatcgctgctcgcagctttaattcatATTTAAGATGCTACTAATGATAATCCAGCTAGAAAAAGCCTGAGAAGTCTAAAGTTAGAAAGGAAGTACAGAGAGTGGTttctatggagatgatacactaTCTCGTATCGTCTCATTAGAGGAATCTGGCAGCTGCAGACCTGAGACTTGCAAGGAGACTAAAGTTTAAACTCGTCAATAACCTTTGCCCTGAACTGGACTTTACTGGTTCCGTGTTACAAGTCTTACTGGTTCTGTGTCGGTAGTCTGGTTTAAAGCAGAGTCTGCAGCCTCTTGGGCGTCTCTGGCCATCTCTTTGTTCTGTTCAGTTTTCTCCTTCAGGGCTTCAATCTCATCCTGCAGATTTTTAGGTCGACGATTCATCAACTTTGTCTCGACGTCGTCCAGTTTGTCTTTCAtATCTTGGATGCGGTCTTTGGTCATGTCTCTGTCTCGGCTGGCTGCATCCAGGTTGTTGTTGGCTTTGTCCTGAGCTTTCTCTGCTCCAGAAATGTCTCTGCTGATCTCAGTCACATCAATGTTCTTTGTCCGCTCCTTGAGTTCCCGAGCTCTCTGCAGCAGGTCTTGGGCGGTCTCGGCGGTCTCCTGCAGGTACCTCAGGTCGTCTTGGATGTTGATGGTGTTGGACAGCAGATTATTGATGTCTTTGATCATTGATCGGATCTGATCTGGTGTTCCTGGCAGCTGGATGGCCAGAACAGCTTGGGACATTTTCTCAATGTCCTCCGGAGGAACCATCTCATCTGTCCGGGAGAAAACATGATGAGTTACCTTTCAGTTGTACGACGGTTGTTGTTGATTATATTGTGTCAACTTTGTAATACTGATAAGCACTTTTCCTACCCTGTGTGGGCTACTTTGACGCTGCTACCCATGTGCCTTGCTTAGtacttgtatttatttgttctcaTACTGTAACGGTTGTGTTCcagtttttattgttgttttaggCTTACTCTATTCCCCCCAACCCACCCCACTAGTGACTGTGTGTATATCTTCTTGTATGTGTTTATAACTGCTGCACACCCAATCGCCCTTCAGGGACACAAATAACATTGAAGTTGTACGACGGT
>XM_039808963.1
tggtggagtctccagaggctggttttagaacgtaagagacatCTCCTATTTCTACAGAcaatatattctatattttggtAGCAGTAACGGGCTATCCACAGCTTGCTAACACAAGCAGGAGCACCTGCATTGTAATTCGACTTGTGAAAATGGATCGGTTTTAGGAGAAGGCCTCCATCAACGTTGCTACTAGCtaaactagcaagctacatgaTGCCCTCCCTCAGCTGTTCACCTGGCTGTGACTCGTGCCTCCTGTTCAGCCAGAAGATAGTGGAACTTGAAGCCAGAATATCGACTCTCCACCAGATCAAGGCAAGTGAACAGTTCCTCGACACCATTATCATTGGAAgttcccctcacacacacactgtcggatgtcttgattccactgtgccctgcaatactctcaccccaccacgcactaatacaacctctgaccctgttgtctctcctcggCTTCTGCCGAGGACCCAGCCAGCTCTGCTGAccagctccactccacaccagCCTGAGCCATGGCGTGTAAGCAAGCACCAGAGCAGGCGGTCAGGACGACGCTCAGCCCCAGCCCAACCCCTACAACTAGAAAATCGCTACAGCATTCTGACGAACGACGAGGAGTTCCCTTCTCTGCCACGTCCCCACGCAGCTCATCCTGGTCCATCCACACAGTCGACGCGCCCATTGAGGGCGGACTCTCCCCCCTCGGACTCATCAACCTCCACGCTGGTCATCGGAAGCTCCATGGTCAGGGACCTCTACATTCCCCCTTCACCTAGCAGTCCCTCCAAGGTCTACTGCTTCCCCGGTGCCAATGTCCGtgacatccagcacaaactTCCCAGCATCCTCGCCCGCCACGCCAAGGTCAACAACATCATCGTGCATGTGGGCACAAACGACATCAGAGAGAGACGGTCAATAGCACTCCGGAAAGACTTCATAACTCTCATCACCATCCCTGATGGGCACAGGAAAACGGATCgtcatctctgggcctctacctacctacaggaagggtgcggagagatggtccagactgttctggctccacacctggctggaaccactctgcacctccctgagcattccctatGTCGACAACTTCAACTTGTTCTGGGAAATGCCCAACCTCctgaagcatgatggtctccacccaaactGACACGGAGCCAGGCTGCTATCTGACAACAGaacgaccacactgaaagacaCTGACTTGAGTTCCCGAGCTCTCTGCAGCAGGTCTTGGGCGGTCTCGGCGGTCTCCTGCAGGTACCTCAGGTCGTCTTGGATGTTGATGGTGTTGGACAGCAGATTATTGATGTCTTTGATCATTGATCGGATCTGATCTGGTGTTCCTGGCAGCTGGATGGCCAGAACAGCTTGGGACATTTTCTCAATGTCCTCCGGAGGAACCATCTCATCTGTCCGGGAGAAAACATGATGAGTTACCTTTCAGTTGTACGACGGTTGTTGTTGATTATATTGTGTCAACTTTGTAATACTGATAAGCACTTTTCCTACCCTGTGTGGGCTACTTTGACGCTGCTACCCATGTGCCTTGCTTAGtacttgtatttatttgttctcaTACTGTAACGGTTGTGTTCcagtttttattgttgttttaggCTTACTCTATTCCCCCCAACCCACCCCACTAGTGACTGTGTGTATATCTTCTTGTATGTGTTTATAACTGCTGCACACCCAATCGCCCTTCAGGGACACAAATAACATTGAAGTTGTACGACGGTTATTGTTAAACTCTACAACTGTCTGTATTGTTGTATGACGGTTGTTGTTAAAGCATAAAACTGTCTGTATATGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108649 True 4778 lncRNA 0.46 5 52554 58007
XM_039808963.1 False 1838 mRNA 0.50 2 52479 65878

Neighbor

gene id symbol gene type direction distance location
LOC120563419 LOC107396773,LOC105929669,LOC106928452,LOC101167703,LOC102224045,LOC103152536 coding upstream 134617 200495 ~ 202927 (-)
LOC120563420 LOC106928452,LOC103152536,LOC101167703,LOC103466313,LOC102224045,LOC107092639,LOC107396773,LOC105929669 coding upstream 153048 218926 ~ 221857 (-)
LOC120563696 LOC102781631 coding upstream 208884 274762 ~ 288762 (-)
LOC120563704 NA coding upstream 315659 381537 ~ 441542 (-)
LOC120563705 NA coding upstream 382176 448054 ~ 472724 (-)
G80885 lamb1,LOC100707779 non-coding upstream 54399 120277 ~ 121906 (-)
G80886 NA non-coding upstream 88342 154220 ~ 155503 (-)
G80895 NA non-coding upstream 98069 163947 ~ 165030 (-)
G80898 NA non-coding upstream 112151 178029 ~ 178738 (-)
LOC120564464 NA non-coding upstream 140679 206557 ~ 213727 (-)
G80889 NA other upstream 74811 140689 ~ 148955 (-)
LOC120563695 nup160 other upstream 188572 254450 ~ 290260 (-)
LOC120563703 frs2,LOC102791683,LOC102194035,LOC101482686,LOC101062095 other upstream 299747 365625 ~ 380890 (-)
tbc1d15 tbc1d15 other upstream 410711 476589 ~ 519373 (-)
G81072 LOC106573129,LOC106561542 other upstream 464371 530249 ~ 531894 (-)

Expression


Co-expression Network