LOC120563709 (LOC103365992,LOC102289231)


Basic Information

Item Value
gene id LOC120563709
gene name LOC103365992,LOC102289231
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 726856 ~ 799724 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU109151
CAACACCCTGGCTGTGAACCGAGCAGGAGTCCAGCCGGTTCAGACCCGTTCTCCAGTCGTCTTCAGTCAGACTCTCAGACCTCAGGGGACGCTCGTGAGTCGACCCATGACGATAATCGGCAGAGGTCTGGTGACGCCGACAGCTACGGCCAATCAGAGGAAGCTGAGCGACCCGGGGGGCGGGACCTTCAGcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactc
>TU109164
ACGGTCCGATATCAAAGATGGCGGGAGCCTCCGACCCACTGGAGGACATGCTCTTCAATGAGGTGGATGAGAAAGCAGTTAGCGACTTAGTTGGCTCTCTGGAGTCTCAGCTCGGCGACAGAAAGGCTCCCGCCGCTTCTTATTCCGACGGGAAACGGGACGCAGCGCCAACGGCCGCCGGGCACTTCTCAGGGAAAGTGCGCGAGCAAGTGGGGTCTGTGGAGCCGCAACAAGGGCATCCAAAAGCGGCGTTACTGACCCAGGAACCCGGCGCTAACGTTTCTGAGCCGCTCTCCGGGAAACCCCTCACTTCTTCTACCTCCTCTGTCGCCGCCGGGGCCGTGATCACCGCCGGAGCGAGTCTACAAACAGTTGGAGTCGGAGCATCTCCCGTTATCTCCCCGGGAACTTTGCCCACTCAGCCCGGCGCTGCTAGCTTCCAACGGACGGCTGTTCTGGGCTCGAGCGTTCTGACTCCGGGCTCGAGCGTTCTGGCTCCGGGCTCGAGCGCTGCGGAGGCGATCAGGACCGCTTCTCCCGGATTACAAAGTTTAAACGGGGGTTCCGGGGCTGTGAAGTTGGGGGCCACCACGGTGATAAGTACCGCCAGTACCGGGGGATCCACGATCATATCCTCCATGGCTTCGCAGCCGAATAACTTCCCTCCTCAGCCCACAGTGGCGTCTCCCGCCGCCGGTACTCTGCAGAGGCTCCCCGGCCCGGTGAACGGACTGGACCCTAAAGCTGCCCCCGCGGTGCCCCAGCAGGGCGCCCCCTCCCCGGCA
>XM_039808070.1
ccaacaattccccgcaaagagcaagcatttagtgcgacagtggcgaggaaaaacatacttttaggcagaaacctcgagAAACATCGCGTGTTGAGGAAAACATCCTTTCTATGTCTTTCTATTTCTATGCTCGAAAACAACTCGGATCCTCCGCGCATGCGTACATTCTAAAATACGATTTGCACAACGGTCCGATATCAAAGATGGCGGGAGCCTCCGACCCACTGGAGGACATGCTCTTCAATGAGGTGGATGAGAAAGCAGTTAGCGACTTAGTTGGCTCTCTGGAGTCTCAGCTCGGCGACAGAAAGGCTCCCGCCGCTTCTTATTCCGACGGGAAACGGGACGCAGCGCCAACGGCCGCCGGGCACTTCTCAGGGAAAGTGCGCGAGCAAGTGGGGTCTGTGGAGCCGCAACAAGGGCATCCAAAAGCGGCGTTACTGACCCAGGAACCCGGCGCTAACGTTTCTGAGCCGCTCTCCGGGAAACCCCTCACTTCTTCTACCTCCTCTGTCGCCGCCGGGGCCGTGATCACCGCCGGAGCGAGTCTACAAACAGTTGGAGTCGGAGCATCTCCCGTTATCTCCCCGGGAACTTTGCCCACTCAGCCCGGCGCTGCTAGCTTCCAACGGACGGCTGTTCTGGGCTCGAGCGTTCTGACTCCGGGCTCGAGCGTTCTGGGATGGTTCTGGTCCGGACGGAGACGGGCCAGCTGGTGATGGTCCCCCAGCAGGTTCTGGCCCAGGCGCAGGCCAAGACGCAGCAGGCCCAGGCCCAGGCAGCGGCCAACCTCAACCAGAGACCGGCGGCGCCAACAGCCGGGACCGCCATCCGGGTCAGCACCGCCGCTACGGCTCCTCAGACGGTCCGCCTGGCCGCCCCCGTTCAGACCAGAATGGTTCAGTCTCCCTCCACCACCGTACAGAAGGCTCTCACGGTGGCGCCGGGCGGAGCCGCGGTGTCGGTGAAGATGACCCCCCAGAAGGCTCAAACGGTGATCACCGCCGGGGGGACGCCAGTGACCAAACCTGCCGGCGTCCCGTCCGCCCCGCTGACCAGCGCCACGCCCGCCCCCGCGCCCACCACGCCCGCCAGAGTCAACATGGTGTCGCAGGAGATGCAGGAAAATGTGAAGAAGTGTAAGAACTTCCTGGCCACTCTGATCAAGCTGGCGTCGCACAACTCTCCTTCCCCCGATACCTCCAAGAATGTCAAGGCCCTGGTGCAGGACCTGCTGgATGCAAAGATTGAGCCGGAGGAGTTCACCACTCGGCTGCAGGCTGAGTTGAAGTCCTCCCCACAGCCCTACCTCATCCCCTTCCTCAAGGCTGTGAACCGAGCAGGAGTCCAGCCGGTTCAGACCCGTTCTCCAGTCGTCTTCAGTCAGACTCTCAGACCTCAGGGGACGCTCGTGAGTCGACCCATGACGATAATCGGCAGAGGTCTGGTGACGCCGACAGCTACGGCCAATCAGAGGAAGCTGAGCGACCCGGGGGGCGGGACCTTCAGAGACCCAGACCCAGCCCAGAGCAGTCAGCGGTGTAGTTCAGAGATCAGCCAGCAGAGGGCGCCACAGTAA

Function

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109151 False 282 lncRNA 0.57 4 726856 759107
TU109164 False 785 TUCP 0.63 2 798697 799538
XM_039808070.1 True 1579 mRNA 0.61 9 754068 799724

Neighbor

gene id symbol gene type direction distance location
LOC120563705 NA coding downstream 254132 448054 ~ 472724 (-)
LOC120563704 NA coding downstream 285314 381537 ~ 441542 (-)
LOC120563696 LOC102781631 coding downstream 438094 274762 ~ 288762 (-)
LOC120563420 LOC106928452,LOC103152536,LOC101167703,LOC103466313,LOC102224045,LOC107092639,LOC107396773,LOC105929669 coding downstream 504999 218926 ~ 221857 (-)
LOC120563419 LOC107396773,LOC105929669,LOC106928452,LOC101167703,LOC102224045,LOC103152536 coding downstream 523929 200495 ~ 202927 (-)
LOC120564601 rps17,LOC107389132,LOC108428414 coding upstream 167971 967695 ~ 984162 (-)
LOC120564810 NA coding upstream 170760 970484 ~ 970611 (-)
LOC120564811 NA coding upstream 174682 974406 ~ 974533 (-)
LOC120564812 NA coding upstream 177157 976881 ~ 977008 (-)
LOC120564813 NA coding upstream 182512 982236 ~ 982363 (-)
G81127 NA non-coding downstream 16054 710077 ~ 710802 (-)
G81116 LOC102197230,LOC102290238,LOC102787624,LOC108251024,LOC101477544 non-coding downstream 64270 661456 ~ 662586 (-)
G81112 NA non-coding downstream 77032 646137 ~ 649824 (-)
G81101 NA non-coding downstream 110217 615885 ~ 616639 (-)
G81099 NA non-coding downstream 115110 608153 ~ 611746 (-)
G81143 NA non-coding upstream 9996 809720 ~ 810400 (-)
G81147 NA non-coding upstream 17092 816816 ~ 819042 (-)
G81150 NA non-coding upstream 32653 832377 ~ 839289 (-)
G81153 LOC100196524 non-coding upstream 45176 844900 ~ 854097 (-)
LOC120563618 NA non-coding upstream 102471 902195 ~ 912773 (-)
G81085 NA other downstream 164577 561663 ~ 562279 (-)
G81072 LOC106573129,LOC106561542 other downstream 194962 530249 ~ 531894 (-)
tbc1d15 tbc1d15 other downstream 207483 476589 ~ 519373 (-)
LOC120563703 frs2,LOC102791683,LOC102194035,LOC101482686,LOC101062095 other downstream 345966 365625 ~ 380890 (-)
LOC120563695 nup160 other downstream 436596 254450 ~ 290260 (-)
glsl NA other upstream 7020 806744 ~ 935344 (-)
G81445 NA other upstream 204315 1004039 ~ 1045512 (-)
actr6 actr6 other upstream 405070 1204794 ~ 1235228 (-)
ambra1b ambra1 other upstream 447212 1246936 ~ 1768910 (-)
LOC120563578 LOC108241855,LOC108242154,LOC107380983 other upstream 546521 1346245 ~ 1374380 (-)

Expression


Co-expression Network