actr6 (actr6)


Basic Information

Item Value
gene id actr6
gene name actr6
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 1204794 ~ 1235228 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU109718
GATCCGGAAACAGACGAGTAAATGATAATGGCGGATTGTTGTTTTCTCGAAAGTGTAGAACTCATGTGTTTTGTTTAAGTTGCTGTGGAATAAAATAAGACTTTTTCTTTAGTACAGGCAATACAATGGCCACCTTAGTTCTGGACAACGGAGCCTATACGGCGAAAATAGGATACAGTCAGGAGAAAGTCAGTGTTATTCCAAACTGCCAGTTTCGCTCCAAGACGTCCAGATTAAAAACCTTCACGGCCAACCAGCTCGATGAGATCAAAGATCCTTCCGGTCTCTTCTACATCCTCCCCTTCCAGAAGggtTATCTGGTGAACTGGGACGTCCAGAGGAAAGTGTGGGATCACCTGTTTGGAAAGGAGATGTTTAAGGTGGATTTCGCCGACACCAGCGTGGTCATCACCGAGCCGTACTTCAACTTCTCGTCCATCCAGGAGTCGATGAACGAGATCCTGTTTGAGGAGTACCAGTTCCAGTCCGTTCTCAGGATAAACGCTGGCTCTCTCAGCGCTCATCACTACTTCCACACCAAACCCTCCGAGCTGTGCTGCTTGGTGGTGGACAGCGGCTTCTCCTTCACTCACATCGCCCCCTACTGCCGCAGCAAGAAGATGAAGGA
>XM_039807821.1
TTGGCTGTCTCAGATCCGGAAACAGACGAGTAAATGATAATGGCGGATTGTTGTTTTCTCGAAAGTGTAGAACTCATGTGTTTTGTTTAAGTTGCTGTGGAATAAAATAAGACTTTTTCTTTAGTACAGGCAATACAATGGCCACCTTAGTTCTGGACAACGGAGCCTATACGGCGAAAATAGGATACAGTCAGGAGAAAGTCAGTGTTATTCCAAACTGCCAGTTTCGCTCCAAGACGTCCAGATTAAAAACCTTCACGGCCAACCAGCTCGATGAGATCAAAGATCCTTCCGGTCTCTTCTACATCCTCCCCTTCCAGAAGggtTATCTGGTGAACTGGGACGTCCAGAGGAAAGTGTGGGATCACCTGTTTGGAAAGGAGATGTTTAAGGTGGATTTCGCCGACACCAGCGTGGTCATCACCGAGCCGTACTTCAACTTCTCGTCCATCCAGGAGTCGATGAACGAGATCCTGTTTGAGGAGTACCAGTTCCAGTCCGTTCTCAGGATAAACGCTGGCTCTCTCAGCGCTCATCACTACTTCCACACCAAACCCTCCGAGCTGTGCTGCTTGGTGGTGGACAGCGGCTTCTCCTTCACTCACATCGCCCCCTACTGCCGCAGCAAGAAGATGAAGGAGGGCATCCGCAGGATCAATGTGGGAGGGAAACTACTGACCAACCACCTGAAGGAGATCATATCATACCGGCAGTTACACGTTATGGATGAGACGTATGTGATCAACCAGGTGAAAGAAGACGTTTGCTACGTCTCCCAGCAGTTTTACAAAGACATGGAGATGTTacagaggaaGAAGGGGGAGGTAAACAGCGTGATGATAGATTACGTTCTTCCAGATTTCAGCTCCATCAAAAAAGGCTTCTGCAAGCCGCGAGAGGAGATGGTCTTAAGTGGGAAGTACAAGACCGGAGAGCAGATCCTGAGGCTGGCCAACGAGCGCTTTGCTGTCCCCGAGATGCTCTTCCACCCGTCAGACATCGGCATCCAGGAGATGGGCATCCCCGAGGCCATCGTGGACTCCATCCAGTCTCTGCCAGAAGAGATGCACGCCCACTTCTACCAGAACATCGTGCTGACGGGAGGGAACGCGTTGTTCGCCGGCTACAGGGAGCGACTGGAGGCCGAGCTGCGCTCGCTGGCCCCCGCCCACCTCCCCGTGTCCGTCCTGCAACCTGCAAAtcccatctGTTATCCATGGGAAGGAGGGAAGCTGCTGGCCCACAGTCCAGACTACGACGAGATAGTGGTGACACGCGAGGACTACGAAGAGAACGGACATTTTATCTGTGAAGAAAAGTTTGATATTTGACTGAAAGTAAATTCTGGGCTGCAGCTTAttctgcatcatcatcatcctcagcATCATCTTCATGGACCAGAGGAAATGAATCTGCATCCTAACCGATCCAAGGCATTACAAAATCTGCAAACTGACTCAACTCTGATTGACTTTAGGATAATCAGGATCTGTCTTTACAGTGCAAAATGGATTCAAACAAGTTCATGTGAAAtgaaagttgtttttttgtttttttacataaacaTTATTTCTCTGTTGTCTTTTTA

Function

symbol description
actr6 Predicted to enable nucleosome binding activity. Predicted to be involved in histone exchange. Predicted to act upstream of or within chromatin remodeling. Predicted to be located in nucleus. Predicted to be part of Swr1 complex. Orthologous to human ACTR6 (actin related protein 6).

NR:

description
actin-related protein 6

GO: NA

KEGG:

id description
K11662 ACTR6, ARP6; actin-related protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
TU109718 False 628 TUCP 0.49 5 1229840 1235216
XM_039807821.1 True 1588 mRNA 0.49 11 1204794 1235228

Neighbor

gene id symbol gene type direction distance location
sycp3 sycp3 coding downstream 1422 1195923 ~ 1203372 (-)
LOC120563572 NA coding downstream 10530 1181506 ~ 1194264 (-)
si:ch211-59o9.10 NA coding downstream 26924 1152252 ~ 1177870 (-)
LOC120563352 LOC102080071,LOC102210666,LOC102302880,LOC101466024 coding downstream 116121 1068789 ~ 1088673 (-)
LOC120564601 rps17,LOC107389132,LOC108428414 coding downstream 220632 967695 ~ 984162 (-)
zgc:101783 NA coding upstream 14569 1249797 ~ 1264054 (-)
LOC120563569 NA coding upstream 208399 1443627 ~ 1452280 (-)
chrm4b NA coding upstream 456141 1691369 ~ 1703414 (-)
nox5 nox5 coding upstream 554322 1789550 ~ 1859958 (-)
LOC120564319 NA coding upstream 556402 1791630 ~ 1794752 (-)
G81464 NA non-coding downstream 42127 1099698 ~ 1162667 (-)
G81475 NA non-coding downstream 72129 1129925 ~ 1132665 (-)
G81476 NA non-coding downstream 84554 1118308 ~ 1120240 (-)
G81450 NA non-coding downstream 95378 1015680 ~ 1109416 (-)
G81459 NA non-coding downstream 137881 1065446 ~ 1066913 (-)
G81499 NA non-coding upstream 1502 1236730 ~ 1237745 (-)
G81478 NA non-coding upstream 10795 1246023 ~ 1256519 (-)
G81496 NA non-coding upstream 11158 1246386 ~ 1301755 (-)
G81502 NA non-coding upstream 21541 1256769 ~ 1257934 (-)
G81526 NA non-coding upstream 151428 1386656 ~ 1408756 (-)
G81445 NA other downstream 159282 1004039 ~ 1045512 (-)
glsl NA other downstream 269450 806744 ~ 935344 (-)
LOC120563708 LOC106561532 other downstream 373050 719054 ~ 831744 (-)
LOC120563709 LOC103365992,LOC102289231 other downstream 405070 726856 ~ 799724 (-)
G81085 NA other downstream 642515 561663 ~ 562279 (-)
ambra1b ambra1 other upstream 11708 1246936 ~ 1768910 (-)
LOC120563578 LOC108241855,LOC108242154,LOC107380983 other upstream 111017 1346245 ~ 1374380 (-)
G81535 NA other upstream 235600 1470828 ~ 1472927 (-)
kcnj11l LOC103374924,LOC108251025,LOC106531031,LOC103466804,LOC106904500,LOC103148617,LOC102236473,LOC100711429,LOC101469628,LOC102296518,LOC102199411 other upstream 302911 1538139 ~ 1548184 (-)
trnae-uuc_57 NA other upstream 324790 1560018 ~ 1560089 (-)

Expression


Co-expression Network