ambra1b (ambra1)


Basic Information

Item Value
gene id ambra1b
gene name ambra1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 1246936 ~ 1768910 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU109743
atagaatatgaaaagatgtttatatgtcgtttagacactaatacatattaataaatgacatgttgatgtttgaaagtctcgaggttttcatataaatgcagatatatgaatgtaattttaatatatagttttttcaaatatgtcacctgtcaatccagaaggaaatattctggagcctatgtTGCCGTCAATCCTGCccacgttgtctttgctgtaatcagaccagtatatatttatgtttatgtttatgggaaacctccatgtgtccagacaaggctagcagcagcagcagcagcagcgtcagacacctttctggtgtgcagagacatagaaaacgccacgcagccgccacgcaacagaaacgccacgcagccagtgtgcaggaggccttacGCTTGTTTTCTCTCCCCAGATGTCCCTCCTGAGACTCCGTCTACGAGCGGATCGGCTCCGGGGCAGCCGGCGGCCGCCGCGGCGTCCCAGGCCGGCAGCCAGGGCGAAGCTTCAGCGGAGCCCAACACATCCACAGCTGGCACGGGAGGAGAGTCTGCGGGGGAGTCGGTCTCGGGGGAGGACGCCCTGGCTCGTATCCGGCGTCTGATTGCCGAAGGCGGCATGACGGCGGTGGTCCAGCGGGAGCAGAGCACCACGATGGCGTCCATGGGCGGCTTCGGGAACAACATCATCGTGAGCCACCGCATCCACCGCGGCTCGCAGACCGCCGCCGGGGCGTCCCGTTCGCCGCCGGcggaccctcctcctcctcctcctcggcgcCCCTCCTCATCCCGCAGACGTCCAACCCGGCCGAGCAGCTCGCCATGTGGGGCCCGCGGGCGCCGCCGGGGCTCTCGCTCGCCGTGGACATGGACGACGTGTTTGACGGCGTGCGAACGGACGACGACGAAGACTCCTCTTCTCCGCCaggcccctcctcttcctccatgcTGCTGtcgtcctcttcctcc
>TU109745
GTAGCGGCAGTTTGGCGTCCGGGCAGCTAGTGAATCATCGTACCAATGCCTTAGAAAACATTTCGTCTTCGCCTCCCCTCAGATGATAAGAATGATGTCCATTGATTCCAGTGGATAACATTCATTAGAATAACCGCAAAACACCGATGTCAGACTGTTTTTTGTCGGCCCCGGCCACATTTTCCGTTTTTGGCCGAGCTAGCTAACCAGCTAGCATAGCTGCTAGTTAGCCTGTTAGCAACGCCTATGATGGGGAGCGGATCGATAACGGAAGcctaGACTCTGCATGGCGAAGGACTGGCAGCGGTGGGAGTGAGCAGCCAATCAGCCGAGGACCCCCGGTAGCAGCATGGCGTCCCGTCAGAGGAACTCGGTCCGGATCCTGTCGAGCCGGGAGCGCGGCTCCCAGACCTTTGGCTCCCAgaggctgctgcagctgctggtgGAGGAGAAGGTCCGCTGGATGAAATGGCAGAGTCaggtgagagacacacacacacacacacacacacacacacacacacactgagagacgcacacagagagcaacacacacagacacacacagagagagagagagacacacactgtCCTTTCCAGCTTTTCTAAAACAACCTGTTTAATGAGATCATGTGTTACTCCAAAGCATTAAACCTGTTCTGTATAATAATTTATAAACAGTAATAAAACAGACACATCAAGATTGCGTAGGCTGGCGGTGTTTATTCCAAtcttagctgtgtgtgtgtgtgtctgtctgtctgtctgtctgtctccctctgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgtctctgtgtgtgtgtgtcgctgtgtgtgtacactcagagacacacagagacacatacatacagacacacacagacacacacacattatattaaatgtcatttagctg
>TU109746
GTAGCGGCAGTTTGGCGTCCGGGCAGCTAGTGAATCATCGTACCAATGCCTTAGAAAACATTTCGTCTTCGCCTCCCCTCAGATGATAAGAATGATGTCCATTGATTCCAGTGGATAACATTCATTAGAATAACCGCAAAACACCGATGTCAGACTGTTTTTTGTCGGCCCCGGCCACATTTTCCGTTTTTGGCCGAGCTAGCTAACCAGCTAGCATAGCTGCTAGTTAGCCTGTTAGCAACGCCTATGATGGGGAGCGGATCGATAACGGAAGcctaGACTCTGCATGGCGAAGGACTGGCAGCGGTGGGAGTGAGCAGCCAATCAGCCGAGGACCCCCGGTAGCAGCATGGCGTCCCGTCAGAGGAACTCGGTCCGGATCCTGTCGAGCCGGGAGCGCGGCTCCCAGACCTTTGGCTCCCAgaggctgctgcagctgctggtgGAGGAGAAGGTCCGCTGGATGAAATGGCAGAGTCaggtgagagacacacacacacacacacacacacacacacacacacacacacacacacacagtcaggtgagagacacacacacacacacacacacacacacacacacactgagagacgcacacagagagcaacacacacagacacacacagagagagagagagacacacactgtCCTTTCCAGCTTTTCTAAAACAACCTGTTTAATGAGATCATGTGTTACTCCAAAGCATTAAACCTGTTCTGTATAATAATTTATAAACAGTAATAAAACAGACACATCAAGATTGCGTAGGCTGGCGGTGTTTATTCCAAtcttagctgtgtgtgtgtgtgtctgtctgtctgtctgtctgtctccctctgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgtctctgtgtgtgtgtgtcgctgtgtgtgtacactcagagacacacagagacacatacatacagacacacacagacacacacacattatattaaatgtcatttagctg
>XM_039808077.1
ggctagctagcagctagctagttACGCAGTAGCGGCAGTTTGGCGTCCGGGCAGCTAGTGAATCATCGTACCAATGCCTTAGAAAACATTTCGTCTTCGCCTCCCCTCAGATGATAAGAATGATGTCCATTGATTCCAGTGGATAACATTCATTAGAATAACCGCAAAACACCGATGTCAGACTGTTTTTTGTCGGCCCCGGCCACATTTTCCGTTTTTGGCCGAGCTAGCTAACCAGCTAGCATAGCTGCTAGTTAGCCTGTTAGCAACGCCTATGATGGGGAGCGGATCGATAACGGAAGcctaGACTCTGCATGGCGAAGGACTGGCAGCGGTGGGAGTGAGCAGCCAATCAGCCGAGGACCCCCGGTAGCAGCATGGCGTCCCGTCAGAGGAACTCGGTCCGGATCCTGTCGAGCCGGGAGCGCGGCTCCCAGACCTTTGGCTCCCAgaggctgctgcagctgctggtgGAGGAGAAGGTCCGCTGGATGAAATGGCAGAGTCagGGTGATGACTGTGTGCTGTTCCTGCAGGGCGGCAGCGAGAGTTGGTTCACCGAGAGCAACGTTGCCATCGCCTCCCTGGCCTTCCACCCGAGCGCTCAGCTCCTCCTCATCGCCACCAACAACGAGCTGCACTTCTGGGACTGGAGCCGGCCGGAGCCCTTCGCCGTGGTCAAGACGGGCAGCGACACGGAGAGAGTCCGGTTGGTGAGGTTTGACCCTCTTGGTCACAACCTACTGACGGCCATCGTGAATCCGTCCAATCAGCAGAACGAGGAGGACTCGGAGGTCCCCATGGACAGCGTTGAGATGCCTCACTTCCGCCAGCGCTCCTTCCTGCCTTCGCAGCCGGTTCGCCGCACGCCCATCCTCCACAACTTCCTGCACATCCTGTCGTCTCGGTCGCCGGGAGCTCAGACAGCGGGCGAGCAGGCGCGCCCTCTGGGGGACAACGGGAGCGGTGTAGGAGAATCTCCCAGCATGCCTCTGGCCCAGTACCCGACGTCTGAGCGCGGGCCTCCGTTCCCGGGCTGCACGCAGCACCTGGGCATGGTGTGTCTGTGCAGTCGCTGCTCGGCCAATCGCAACCCTTCGCTGGCCGCCGACGCGACCGTCGCCGATCCCCCGCAGCCCTCGCCGGCGTCCACGTTCTCTTCGGCGCGGACCGAGCCCAGGCAGCCGTCGGAGCGACCCTCGGCCTTTACCTCGGTCTACTACAGCGCCGGAGCTTCTCTAAACGCTGCCGCACCGAGCGGCGCCGAGCCGCACTCCATCTCCAgCCCAGCCTCCAGGCCCGGCCCAGACTGGACCCGTAACCTGCTGAGTATgcgagagggagggggggtcgGCCTGCCCCCCaggacctcctcctcctccatcagcCTGCTGTCGGTCCTCCGCCAGCAGGACGGCTCCTCCCACTCGCCCGTCTACACCTCCGCCTCAGAAGGCCGGGGGTTCGAGCCCGGCGCCCGAGACGCCGCCGCCCGAGACGCCGCCGGCACCAGCAGCGGGCACCACCCGTTCTGGGACGGTTCCCGCGGCAACACTGCGTCCTTCCGCAACGTGCTGCAGTGCAACCTGAGCCGCTACTTCATGGAGTTCGACCGCATGCAGGACCTGGAGCCGCCACTAGGGGCCCAGGAGCCCAGCCCAGAGCTGCTCAACAACAACCAAATGGACCCCGAGCGAGCCGggccttcctcttcttcctccacgTCCTCCCCTACTATCATCCACTACCagccccctctcccccctcctcctcccgtcCCGCACAGCACGCTGGAGAACAACCCGCCCCCCCCGCAGGCGTCCCGCGGTCATCTGAACCGCTGCCGAGCGTGCCACAACCTGCTGACCTTCAACCACGACTCTCAGCGCTGGGAGCGAACCAGCCAGACCTCCTCTGTGTCCGCCTCTCCTCTGGagccctcctcttcctcttcccacTCCTTCCCTGCTTCGTCTGCGTCGCCGTGGCAACCCGAGGACGGCGGTAGGACGCCGGAAGCGGCGCCGCCTCAGCCCGAGCCCAGCGAGCAGCCGCCTGCCCCCGGGGCCTTCCCCATGGCCCCCTCCCCCAGCCACCAGCCCGGCGAGCAGACGGTCGGCCTGGTGTACAACCAGGACACGGCGCAGTGGGAGCGGGTGTACCGGCAGGCGGCGGCGCCCGGCAGATCGGCAGAGCCACCGGAGGCCTTAAGCCAAGAAATGCCTGTTGACCCCCCAGACGAGGACTCCCTGCGCAGGCGACTGCTGGAATCCTCTCTGTTATCGCTGTCTCGCTATGACATGTCAGGATCCAGAGACCACCCCATCTACCCCGATCCAGCCAGGCTTTCTCCAGCCGCGTACTACGCCCAGAGGATGATCCAGTATCTGTCGCGGCGGGACAGCATTCGCCAGCGCTCGCTCCGCTATCAGCAGAACCGCCTGCGGGCCATGTCGTCTTCATCGGACAGCCCCGCCAGCAACCCGTCCAGCTCCATGGACAACAGCGATGTGGACTTTGAAGAGCTGGATGATACTGGAGACAGAGCGAGGCACAGGACTCCACGTAACGCCAGGATGTCTGCGCCCTCGCTCGGCCGCTTCGTCCCACGACGGTTCCTCCTCCCGGAGTACCTGCCCTACGCCGGGATCTTCCACGAACGAGGGCAGCCCGGCCTCGCCACACACTCCTCCGTCAACAGAGTGCtcgctGGGGCATCGATCGGGGACGGCCAGTCTGCGGTCGCCAGCAACATCGCTAACACCACGTACCGTCTGCAGTGGTGGGACTTCACCAAGTTTGACCTTCCGGAGATCAGCAACGCCTCCGTCAACGTCCTGGTGCCAAACTGTAAAATCTACAACGACGCCAGTTGTGACATCTCTGCAGACGGTCAGCTGTTGGCCGTCTTCATTCCCAGCAGCCAGCGGGGTTTTCCAGACGAGGGCATCCTGGCCATCTACTCTCTGGCTCCCCACAACCTGGGAGAGATGCTCTACACCAAGAGATTCGGTCCGAATGCTATCTCCGTTAGCTTGTCTCCAATGGGCTGCTACGTGATGGTCGGCCTGGCCTCCCGCAGGATCCTGCTGCATCCCACCACCGACCACATGGTGGCGCAAGTCTTCCGCCTGCAGCAGCCCCACGGAGGAGAGACCTCCATCAGGATGGTGTTTAACGTGGTTTACCCGATGGCTCCAGACCAGCGGCGCCACGTCAGCATTAACTCGGCCCGCTGGCTGCCGGATCCGGGGATGGGTCTGGCGTACGGAACCAACAAGGGAGACCTGGTCATCTGCCGGCCTGTgttctACCGAAGCGACGGTGAGAGTCCAGCCGAGTCGAGCAGCGAGCCGTTGTTCTCCGTTAACAACAGTGGAACCAGCCGGACTCGAGGTTCTGACAGACCGGGTCCAAATCGATCTGGCTGGAGACTGGACAGAGACATGGGTCTGATGAACGCGATTGGTCTTCAGCCCCGACATCCCGCCCCCTCGGTGACATCACAGGGAACCCAGACGCCAATCATCCAGCTGCAGAACGCCGAGACGCAAACGGAGAGGGAGCTGCCGGAGCCCAGCGCTCCGCAGGCCCCAAGAGGAGAGTCTGCGGGGGAGTCGGTCTCGGGGGAGGACGCCCTGGCTCGTATCCGGCGTCTGATTGCCGAAGGCGGCATGACGGCGGTGGTCCAGCGGGAGCAGAGCACCACGATGGCGTCCATGGGCGGCTTCGGGAACAACATCATCGTGAGCCACCGCATCCACCGCGGCTCGCAGACCGCCGCCGGGGCGTCCCGTTCGCCGCCGGcggaccctcctcctcctcctcctcggcgcCCCTCCTCATCCCGCAGACGTCCAACCCGGCCGAGCAGCTCGCCATGTGGGGCCCGCGGGCGCCGCCGGGGCTCTCGCTCGCCGTGGACATGGACGACGTGTTTGACGGCGTGCGAACGGACGACGACGAAGACTCCTCTTCTCCGCCaggcccctcctcttcctccatgcTGCTGtcgtcctcttcctcccctctccgcctctccttttcttttcaagcCCCCGGGTTTTATCGTATTGGTGGGGCAGGCGTCTCCAACGGTTACCCCGGCGACCTGTACAGCAGGTAGTTCACCTTTTTGGGGCCAGGAGAAGCCGAGCGTTTCAGCGAAATAA

Function

symbol description
ambra1 Enables GTPase binding activity and ubiquitin protein ligase binding activity. Involved in macroautophagy; positive regulation of phosphatidylinositol 3-kinase activity; and response to mitochondrial depolarisation. Located in cytosol. Colocalizes with mitochondrion. Biomarker of multiple system atrophy.

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K17985 AMBRA1; activating molecule in BECN1-regulated autophagy protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU109743 False 968 TUCP 0.58 2 1725152 1727741
TU109745 False 949 lncRNA 0.50 4 1246936 1768882
TU109746 False 1010 lncRNA 0.50 4 1246936 1768882
XM_039808077.1 True 4172 mRNA 0.64 17 1725007 1768910

Neighbor

gene id symbol gene type direction distance location
sycp3 sycp3 coding downstream 43564 1195923 ~ 1203372 (-)
LOC120563572 NA coding downstream 52672 1181506 ~ 1194264 (-)
si:ch211-59o9.10 NA coding downstream 69066 1152252 ~ 1177870 (-)
LOC120563352 LOC102080071,LOC102210666,LOC102302880,LOC101466024 coding downstream 158263 1068789 ~ 1088673 (-)
LOC120564813 NA coding downstream 264573 982236 ~ 982363 (-)
nox5 nox5 coding upstream 20640 1789550 ~ 1859958 (-)
LOC120564319 NA coding upstream 22720 1791630 ~ 1794752 (-)
LOC120564320 NA coding upstream 48001 1816911 ~ 1820520 (-)
LOC120564321 NA coding upstream 55180 1824090 ~ 1826931 (-)
rpgrip1l NA coding upstream 96758 1865668 ~ 1905302 (-)
G81499 NA non-coding downstream 9191 1236730 ~ 1237745 (-)
G81464 NA non-coding downstream 84269 1099698 ~ 1162667 (-)
G81475 NA non-coding downstream 114271 1129925 ~ 1132665 (-)
G81476 NA non-coding downstream 126696 1118308 ~ 1120240 (-)
G81459 NA non-coding downstream 180023 1065446 ~ 1066913 (-)
G81609 NA non-coding upstream 93589 1862499 ~ 1862980 (-)
G81627 NA non-coding upstream 166077 1934987 ~ 1935976 (-)
G81643 NA non-coding upstream 270699 2039609 ~ 2040563 (-)
G81651 NA non-coding upstream 338064 2106974 ~ 2168454 (-)
G81652 NA non-coding upstream 338189 2107099 ~ 2107676 (-)
actr6 actr6 other downstream 11708 1204794 ~ 1235228 (-)
G81445 NA other downstream 201424 1004039 ~ 1045512 (-)
glsl NA other downstream 311592 806744 ~ 935344 (-)
LOC120563708 LOC106561532 other downstream 415192 719054 ~ 831744 (-)
LOC120563709 LOC103365992,LOC102289231 other downstream 447212 726856 ~ 799724 (-)
G81655 NA other upstream 341711 2110621 ~ 2112849 (-)
G81726 LOC106531021,LOC102237407,LOC103130839,LOC107099816,LOC101479225,LOC103365994,LOC107389108,LOC106938894,LOC106907116,LOC103466381,LOC101173933 other upstream 901405 2670315 ~ 2678513 (-)
G81738 NA other upstream 915988 2684898 ~ 2685240 (-)
LOC120563733 NA other upstream 983328 2752238 ~ 2819413 (-)
G81832 NA other upstream 1168842 2937752 ~ 2937990 (-)

Expression


Co-expression Network