LOC120563578 (LOC108241855,LOC108242154,LOC107380983)


Basic Information

Item Value
gene id LOC120563578
gene name LOC108241855,LOC108242154,LOC107380983
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 1346245 ~ 1374380 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU109775
AATTTGGCCAGGTAAAGCAGCTAACAACAAGAAAAGCTGTCTAAAGAAGactgagtgtctgtaacctgtcagagagaagctgtgaagctctgtcctcagttctcagctcccagtcctctagcctgagagagctggacctgagtaacaacaacctgcaggattcaggagggacgctgatctctgttggactgaagagtccacactgtgCACTGGAGACTATCAGtctgtctgatctcagaggaaggctgttcttctctggtctcagctctgagctccaacccctcccatctgagagagctggacctgagctacaatcatccaggagactcaggagtgaagctactATCAGCGGGACTGAAGGATCCTCTCTGgagactggaaactctcagggtggagcctgctggagtcagatggttGACACCAGGTCTAAGGAAGTATTCTTGTGAACTCACActcgacacaaacacagtgaacagagaactcaaactgtctgacaacaacaggaaggtgacatatgtagaggag
>XM_039807820.1
CCCAGAGTTTGTGTCGCAGCTTTTTGTCTCCGTGTGGAGCTCCAGCTGAAGATGAAAGGCTGAGTGTGTTAGCATGGATCAGTGTGAGGACAGAGGAACCACTCTGAGTGGGGAACAGGACAGAGGAACCTCTCTGAGTGGAGAACAGGACAAAGGAACTACTCTGAGTGGAGAACAGGACCTCCAGACCAAAGCTCAGAGGATCCATCAGAGACCAGACTCTCCTGAACcagaacccagctgtgtgtccttcaagAGTGACCGGTCTAAGGAGGAGCCGCTGTGGTTTAAAAATCAAGTTTCTCCAACAGCAGAgacCATCCTGTTACTGGACTGTGATGAATCTGAACCGGGACCCAGCTGTCTGTCCGTGAAGAGTGACCGGTCAAATCCTTGCCTTATTAATTTTAAAGGAGAGAAAGCTTCTGCTGCAAAGAAagtggaccaggagagctCAGAGGTTCCTAGTGGTCATtctgcccagcagcatcaaacacacctggactccatatgtatgctgctggaggagaacatcatcacttttgtgaagaacgagctgaagaagatccagaaggttctgagtccagattacccagaatgctcagagagtcagaggaaggatgaggatgaagagcagaggaggagcagagaggcatttctgaagatcacactgcacttcctgaggagaatgaagcaggaTGAGCTAGCTGACCGTCTGCAGCGCATTAGAAGTCCAGCAGGAGTTTGTAAGTGTAAACTCAAATCTAAACTAAACAAGAagtttcagtgtgtgtttgaggggattgctaaagcaggaaaccaCACCCTTCTGAATCacatgttcacagagatctacatcacaaagggagggactgcagaggtcaatgatgaacatgaggtcagacagattgaaacagcatccaggcaaccagacagaccagaaacaacaatcagacatgaagacatctttaaaacccCACCTGGAAGTGATGAAgcaatcagaacagtgatgacaaagggagtggctggcatcgggaaaacagtcttaacacagaagttcactctggactgggctcaacacaaagccaaccaggacatccagttcacatttccattcaccttcagagagctgaatgtgctgaaagggaaaaagtacagcttggtggatcttgttgattacttctttagtgaaaccaaagaagcaggaatctgccGGTTTGAAGAGTTCCCGGTTGTCTTCATCTTTGatggtctggatgagtgtcgactccctctggacttcctcaacactgagatcctgactgatgttacaaagtccacctcagtgggtgtgctgctgacaaacctcatcagggggaatTTGCTTCCgtctgctcgcctctggataaccacacgacctgcagcagccaatcaaatccctcctgagtgtgttgacatggtgacagaggttAGAGGATTCACTGACCctcagaaggaggagtacttcaggaagagattcagagatgaggaTCAGGCcaacagaatcatctcccacatcaagacatcacgaagcctccatatcatgtgtcacatcccaatcttctgctggatcactgctacagttgtGGAGGACatgttgaagaccagagagggaggagagctgcccaagaccctgactgagatgtacatccacttccttgtagttcagtccaaagtgaagaacatcaagtatgatggacgagctgagacagatccacactggagtccagagagcaggaagatgattgagtctctgggaaaactggcttttgagcagctgcagaaaggcaacctgatcttctatgaatcagacctgacagatTGTGGCATTAATATCACAGCAGCCTCAGTGTGCTCAGGACTTTTCACACAGgtctttaaagaggagagaggactgtaccaggacaaggtgttcagcttcgtccatctgagtgttcaggagtttctggctgctcttcatgtccatctgacattcaccaactctggagtcaacctgctgtcagaagaacaaacaacatcaacagttttctaccagagtgctgtggacaaggccttacagagtccaaatggacacctggacttgttcctccgcttcctcttgggtctttcactgcagaccaatcagaatctcCTACGAGGcctgatgacacacacagaaagtagCTCAGTGACCAACCAGAGAAAAGTCTCatacatcaagaagaagataAGTAAGAATCTGTCTGCcgagagaagcatcaatctgttccactgtctgaatgaactgaatgatcatTCTCTAGTGGAGCAGATCCAACGGTACCTGAGatcaggaagtctctccacagataTTCTGtgtcctgctcagtggtcagctctggtcttcaacttactgtcatcagaagaaGATCTGGATGTGTTTGACCTGAGGAAATACCgtgcttcagaggaggctcttctgaggctgctgccagtggtcaaagcctccagcaaagctctactgagtggctgtaatctgtcagagagaagctgtgaagctctgtcctcagtcctcagctcccagtcctctagtctgagagagctggatctgagtaacaacaacctgcaggattcaggagggaagctaatctctgttggactgaagagtccacactgcacactggagactctcagactgagtgtctgtaacctgtcagagagaagctgtgaagctctgtcctcagttctcagctcccagtcctctagcctgagagagctggacctgagtaacaacaacctgcaggattcaggagggacgctgatctctgttggactgaagagtccacactgtgCACTGGAGACTATCAGggtggagcctgctggagtcagatggttGACACCAGGTCTAAGGAAGTATTCTTGTGAACTCACActcgacacaaacacagtgaacagagaactcaaactgtctgacaacaacaggaaggtgacatgtGTGAAGGAGGAGCAGcaatatcctgatcatccagagaggtttgaccgctgtcctcagctgctgtgtagagatggtctgactggtcgctgttactgggaggttgagTGGACAGGAGAGGTtgatatatcagtgagttacagaggaatcaggaggaAAGGAGACAGTGTTGACTGTTGGTTTGGATGTAATGATCAATCCTGGTGCCTGAGGTGCTCTGATGATAGTTACTCTGCCAGGCACAATAAAATCAGATCATctatcttctcctcctctgtctctaacagagtagcagtgtatgtggactgtcctgccggctctctgtccttctacagagtctcctctgactcactgatccacctctacaccttcaacaccacattcactcaatCTCTTTATCCTGGGTTCAGGTTCTTGTGCAGGTCTcttggttcctcagtgtctctgtgttctgtGTAGGATGGAGGGTCTCCACCTGTTTCTTactgctgatcagttgagtctgtacaggatcacactaacagaaatatttcaggttattgttatatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109775 False 525 lncRNA 0.50 6 1346245 1358116
XM_039807820.1 True 3517 mRNA 0.48 11 1349055 1374380

Neighbor

gene id symbol gene type direction distance location
zgc:101783 NA coding downstream 82191 1249797 ~ 1264054 (-)
sycp3 sycp3 coding downstream 142873 1195923 ~ 1203372 (-)
LOC120563572 NA coding downstream 151981 1181506 ~ 1194264 (-)
si:ch211-59o9.10 NA coding downstream 168375 1152252 ~ 1177870 (-)
LOC120563352 LOC102080071,LOC102210666,LOC102302880,LOC101466024 coding downstream 257572 1068789 ~ 1088673 (-)
LOC120563569 NA coding upstream 69247 1443627 ~ 1452280 (-)
chrm4b NA coding upstream 316989 1691369 ~ 1703414 (-)
nox5 nox5 coding upstream 415170 1789550 ~ 1859958 (-)
LOC120564319 NA coding upstream 417250 1791630 ~ 1794752 (-)
LOC120564320 NA coding upstream 442531 1816911 ~ 1820520 (-)
G81496 NA non-coding downstream 44490 1246386 ~ 1301755 (-)
G81497 NA non-coding downstream 53681 1193875 ~ 1292564 (-)
G81502 NA non-coding downstream 88311 1256769 ~ 1257934 (-)
G81478 NA non-coding downstream 89726 1246023 ~ 1256519 (-)
G81499 NA non-coding downstream 108500 1236730 ~ 1237745 (-)
G81526 NA non-coding upstream 12276 1386656 ~ 1408756 (-)
G81528 LOC102787331,LOC106676141,LOC101484690,LOC102792843 non-coding upstream 13412 1387792 ~ 1409644 (-)
G81495 NA non-coding upstream 95966 1470346 ~ 1608824 (-)
G81534 NA non-coding upstream 96318 1470698 ~ 1566957 (-)
G81553 NA non-coding upstream 124260 1498640 ~ 1505795 (-)
actr6 actr6 other downstream 111017 1204794 ~ 1235228 (-)
G81445 NA other downstream 300733 1004039 ~ 1045512 (-)
glsl NA other downstream 410901 806744 ~ 935344 (-)
LOC120563708 LOC106561532 other downstream 514501 719054 ~ 831744 (-)
G81535 NA other upstream 96448 1470828 ~ 1472927 (-)
kcnj11l LOC103374924,LOC108251025,LOC106531031,LOC103466804,LOC106904500,LOC103148617,LOC102236473,LOC100711429,LOC101469628,LOC102296518,LOC102199411 other upstream 163759 1538139 ~ 1548184 (-)
trnae-uuc_57 NA other upstream 185638 1560018 ~ 1560089 (-)
trnae-uuc_58 NA other upstream 186274 1560654 ~ 1560725 (-)
G81576 NA other upstream 239014 1613394 ~ 1664892 (-)

Expression


Co-expression Network