G84094 (hmg20a,LOC107103253)


Basic Information

Item Value
gene id G84094
gene name hmg20a,LOC107103253
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 11963726 ~ 11966831 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU113221
GCGCTGACCTGCTTCTCCTCGGGCGGCAGCTTGCTCCACTCGTTGCCCAGCATCCTCGTAATCTCTGGAAATGGCACGTCTGGACGCTCTGCCCGTAGCTGCTCTCGTCTGTCGTTCATGAAGCGAACGTAGCCCGTTAGGGGGGCCTTGGGGGCATTGCTGTCCTTCATtggcttcttcctcttcctccccttgGTCCAGCTGGCACGTCGGGGCTTCTCATCTCCATTTCTTTGGCTGCTGTTGTCGTTATTGGCTCCTGGAGAGCCTGTCTGCTCATCCATGACTTCTATGACTACAGGGGAGATCTTAGATCACGTAATCCGTAGCGGTAACGTTACCTGTCCAAAT

Function

symbol description
hmg20a Predicted to enable DNA binding activity. Predicted to be involved in regulation of gene expression. Predicted to be active in nucleus. Orthologous to human HMG20A (high mobility group 20A).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113221 True 351 lncRNA 0.56 3 11963726 11966831

Neighbor

gene id symbol gene type direction distance location
cspg4 cspg4 coding downstream 621357 11265168 ~ 11342369 (-)
snupn snupn coding downstream 748233 11205454 ~ 11215493 (-)
sin3aa sin3a coding downstream 793803 11146670 ~ 11169923 (-)
wdr61 wdr61 coding downstream 853418 11101049 ~ 11110308 (-)
ireb2 ireb2 coding downstream 882421 11062695 ~ 11081305 (-)
LOC120564089 NA coding upstream 285753 12252584 ~ 12258264 (-)
kras kras,LOC105900436,LOC103038241,LOC107595236 coding upstream 586652 12553483 ~ 12563371 (-)
bhlhe41 bhlhe41,LOC102793158 coding upstream 618480 12585311 ~ 12587491 (-)
itpr2 itpr2 coding upstream 633550 12600381 ~ 12660168 (-)
eea1 eea1 coding upstream 722862 12689693 ~ 12712352 (-)
G84086 NA non-coding downstream 57562 11905409 ~ 11906164 (-)
G84082 NA non-coding downstream 76105 11886902 ~ 11887621 (-)
LOC120563423 NA non-coding downstream 100938 11862361 ~ 11862788 (-)
G84053 NA non-coding downstream 440726 11522709 ~ 11523000 (-)
G84051 NA non-coding downstream 568843 11394548 ~ 11394883 (-)
G84098 NA non-coding upstream 91632 12058463 ~ 12058678 (-)
G84100 peak1 non-coding upstream 128742 12095573 ~ 12096034 (-)
G84102 peak1,LOC102799369 non-coding upstream 136332 12103163 ~ 12103971 (-)
G84103 peak1 non-coding upstream 142355 12109186 ~ 12113725 (-)
G84120 NA non-coding upstream 170010 12136841 ~ 12140672 (-)
G84083 NA other downstream 75328 11888027 ~ 11888398 (-)
ptpn9a ptpn9 other downstream 702765 11173553 ~ 11260961 (-)
oaz2a oaz2,LOC104929548,LOC101470759,LOC102200097,LOC106531198 other downstream 1050509 10823286 ~ 10913217 (-)
LOC120564603 NA other downstream 1248881 10706219 ~ 10714845 (-)
scamp2 LOC103379909,LOC103364404,LOC104932119 other downstream 1301048 10643916 ~ 10662678 (-)
G84123 cat,LOC102293651,LOC102204975,LOC102775586,LOC102293936 other upstream 174692 12141523 ~ 12144546 (-)
G84530 LOC100696427,LOC106963151,LOC107104182,LOC107388919,LOC104956556,LOC102796452,LOC102202152 other upstream 1263786 13230617 ~ 13231095 (-)
prr5a prr5,LOC103371545 other upstream 1279997 13246828 ~ 13256093 (-)
LOC120564547 fbxl14,LOC103380143,LOC107388938 other upstream 1359142 13325973 ~ 13385205 (-)
mafb maf,LOC104941368,LOC104940469,LOC101071510,LOC101484138,LOC103380135,LOC102219741,LOC106520304 other upstream 1607000 13573831 ~ 13618786 (-)

Expression


Co-expression Network