G84129 (LOC104959604)


Basic Information

Item Value
gene id G84129
gene name LOC104959604
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 12177943 ~ 12200835 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU113268
GTTTATTTCAACAGGAAGCATTATATTATTACAACAGTTCTTAATAGCAAGAATGCTAGCAAAGTACGGCACATTCAGTAGTCGCCATCttcttctctcactctctgtacTCAGGGTCTCAACTTATAGCTGCTTTACAACAGCCCCGCCTAGTGGTAGAATGCAGCAGACAAACAAAGATAgaaccaaagaatttctaatatagacCGGCTTTGATAGAACACAACAGCATGGACCCCTATCAGCTGACTCACCCACTGTGGCCTGGCTGTGCGATCCCCTGGTCTAATGGCATGTACAGCAGGGTGATGTTAAGCATCCTCAGCAGCAATGTGGTCAGGTCATCTTCCTCCGGCCGCTTTTCTTCGTCCCAGTTGGtgacaagttcaccatatctcTCAGTCTCATTTACAGGTTTTGATAAAGTCTCCACACCTTGACGTTTAGGGAGTAAAAAAACTATCCATTGCTAGCGTTAGACTGACTTCTCTAatcctaacggctccaaatattgagctcttcttcttctgtgtgaaaacgttactgcggaagtaagtcaatgtgtgctgcaccctttggccgaatacgatcacctgtgttttttagcctaaaaataatcggtttgttttattaatgtatttattcattttttacatataaattatactatttacatattaatgattttttatttatttataaatcaacaACAGCAATTTCTTGGGGGTGCTAAGGGGGTGCTATGGCAATCCTAGGGGTAGCTACAGCACCCCCTAGCCACTCCCTGGCGCTATGCGttagcctgctgagctcctgctgaactgctacacacagtcggacaaaatttgcaattagccatatattttcgtaaaacagcccacatttgacctctacatagttgatttctcacataaaaaagtctcagaagtgaatttagtattTAAAAAGCGGATGAAAAATGTATAAGGCTAATGTgtcaggcttctgtgataatcatcacgcagcagttctgtgtgtatttgttgctagctcatccattttgtgtgcgatcaatctggtgttggtgagtaggaggcttGGCAGTGGTGATCTGTGTGGTAGTTCCCTTAGCCGGGCTAGCAGGCCCGACCGGTATCCGgtcgcacacaaaatggatgagctacaaatttacacacagaactgctgtgtgatgattatcacagaagcctgacTGAACACACGGCAGCTagaagctagctaccggcaggatcgagacagggaccagggtagttgaatttaaacaatgtctgagttgaaaacgcatcttgttgtcacataagtgccctgttcatgttgcacagacattttaattgaattttgtgtgttttaagagGCAGAAAGGCACTCTAATACTTGCCCCGACAAATGCTGTTTCAGCTAAGTGGAAGCTCGTAGACGTACACCGTATTGACCGCACCGATTCGGTAAATAAGGTTGCCTGGAGTTTTGAATAAATTAAATGAGACTTGTTCACTGCTGTAAACTTTATTGTGACGTACTATATGCTTTTAGAGTTCACCGTTGTTTCTATACATCTATCATATTGTTCCTTTAATTGTAAACATTTCATAATGTAATATGTCTGTGAAACCGTTTTAATGCCATGCTGATGATGCAATTGTTGCAAATGTTTCCGTAGTTAGGACTAAGATCTAAGACAGTGGTTTTGGGTAACTGTAACATCTGAAGAGCAATGGTTCCAAATCTGGAACACAAGACCTTTCTACATCTGACAAATGATGTAAGCATTCAGAGAACAATCGTGTGTCACTCTCCAGACTGCGTTTTCTGACAGCATGGTGCAGCCTGGATCCTGGATGGATTTGTCTGGCTGCCTTTCTCCCCATTTGGTAAAGGTCAGAGGTCGGTTTTTCATATCGGCCTCAAAATTCCCCTCAGCTTTGTTAGTGTTGACGTTGATCCAGGCTGTTTTGTTATCATCCCCAAACACTTGAGTGAGTATGTTGTTCTCGTCCTCGTTCTGGGGCAAAGCCAGCTCTAAGCCTCGTTGGGAGCAGAACTCGACGGCCTTAGAGAAAGAGTCTCTCTTCTTGTAGGACACAAAGTATTTCTGACCAACTCTTCGGACAAAGTCATAGTTCATGGCTGTAATGTAAAGAGAACAACATGCAACAAATCAGAAATTAATAAAGTGAAAACAATTGTTCAACAACTTCCAAACTGTATTGTCATCTTGGTCCTCCGG

Function

NR:

description
PREDICTED: pulmonary surfactant-associated protein D-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113268 True 2245 lncRNA 0.42 2 12177943 12200835

Neighbor

gene id symbol gene type direction distance location
cspg4 cspg4 coding downstream 835574 11265168 ~ 11342369 (-)
snupn snupn coding downstream 962450 11205454 ~ 11215493 (-)
sin3aa sin3a coding downstream 1008020 11146670 ~ 11169923 (-)
wdr61 wdr61 coding downstream 1067635 11101049 ~ 11110308 (-)
ireb2 ireb2 coding downstream 1096638 11062695 ~ 11081305 (-)
LOC120564089 NA coding upstream 51749 12252584 ~ 12258264 (-)
kras kras,LOC105900436,LOC103038241,LOC107595236 coding upstream 352648 12553483 ~ 12563371 (-)
bhlhe41 bhlhe41,LOC102793158 coding upstream 384476 12585311 ~ 12587491 (-)
itpr2 itpr2 coding upstream 399546 12600381 ~ 12660168 (-)
eea1 eea1 coding upstream 488858 12689693 ~ 12712352 (-)
G84127 NA non-coding downstream 7748 12169668 ~ 12170195 (-)
G84118 NA non-coding downstream 8296 12160379 ~ 12169647 (-)
G84115 NA non-coding downstream 14923 12157250 ~ 12163020 (-)
G84120 NA non-coding downstream 37271 12136841 ~ 12140672 (-)
G84103 peak1 non-coding downstream 64218 12109186 ~ 12113725 (-)
G84130 NA non-coding upstream 4406 12205241 ~ 12205531 (-)
G84236 NA non-coding upstream 379768 12580603 ~ 12613276 (-)
G84244 NA non-coding upstream 486199 12687034 ~ 12687287 (-)
G84243 NA non-coding upstream 486648 12687483 ~ 12688635 (-)
G84294 NA non-coding upstream 629521 12830356 ~ 12834571 (-)
G84123 cat,LOC102293651,LOC102204975,LOC102775586,LOC102293936 other downstream 33397 12141523 ~ 12144546 (-)
G84083 NA other downstream 289545 11888027 ~ 11888398 (-)
ptpn9a ptpn9 other downstream 916982 11173553 ~ 11260961 (-)
oaz2a oaz2,LOC104929548,LOC101470759,LOC102200097,LOC106531198 other downstream 1264726 10823286 ~ 10913217 (-)
LOC120564603 NA other downstream 1463098 10706219 ~ 10714845 (-)
G84530 LOC100696427,LOC106963151,LOC107104182,LOC107388919,LOC104956556,LOC102796452,LOC102202152 other upstream 1029782 13230617 ~ 13231095 (-)
prr5a prr5,LOC103371545 other upstream 1045993 13246828 ~ 13256093 (-)
LOC120564547 fbxl14,LOC103380143,LOC107388938 other upstream 1125138 13325973 ~ 13385205 (-)
mafb maf,LOC104941368,LOC104940469,LOC101071510,LOC101484138,LOC103380135,LOC102219741,LOC106520304 other upstream 1372996 13573831 ~ 13618786 (-)
zgc:77752 NA other upstream 1830269 14031104 ~ 14037716 (-)

Expression


Co-expression Network