G84326 (rfx4)


Basic Information

Item Value
gene id G84326
gene name rfx4
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 12897059 ~ 12898557 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU113529
ataagcataGAAAGTATAGAAAGAGCAAGACTTAATAGATCAACCTCATCCTTTTGTCAaatttggacatttttgtcaatGCTTTTGTGGACTTTTAcacagaaagaataaagaaagagTTTGAAAAAGAAGACAATTTGACAAAGATTTTAAATTGTCACCACAGACGGTTTCCAGTGcttttatttacagaaaagtgACTAGACTTCATGTTACTGTACACTTTGATAATTTTCCTTTTTATAAATACCCATAGGGTAATAGGTCCTCAGTAGCTTTGAGTGcattataaaacacacaacCCTAGGTTAATGCGTCTTTCACTAACCATACAAAACAGAGAACAAAGTACCAACTgtaacatagaaaataaagtatACACCATGTTACAAAGTTACAGAaaatacatactatatatactgtatatacagtatattgtcacagaaaaacagcaaaaaagctTGCGACAGAATACACTCGCACAGTTGTTTTTGAGTCACAGCAttcaatcattaaaaaaaactatccaaGATGGAGACACCTTAATACAATGATCAATGAGTTTATATTTGTCTTATGATGTTgtatgttttgtctttgtgccaCTGTATGTAACTAGTGTCCCAAAAGAACGTTAAGGCAGTACAGTTCGTCCACATCCTGCAGCAAATAAAGTTGCTGCAGAGAGCCCGTGACAGGATGCTGCACAGTGCTGAGCAACAAGAGGAGACAGCGGTGTCACTGAGATTGTACTGTGGTCAGTGACAGTGTACAGCACACTGATCTGTCAGTCATTGACAAAACTGACTGAGGGTTTGTGGGATGATCTGTGTGCTGAGTTATGAGACCGACGAGGGAAACGGAGGTGTACATTCCTTAAAACAAAGGCACAGCTTGGCAGCAGCATTGCAGTCTTAAAATGATTTTGCTGCAAGTTCATTCTATATTATTTGATTATTGTTTTCCTCCAGCAGTGAGCAAAAACATCAGTTGTTGAAGGAATTTCATTAAACCTCCACACAAGTTACACCACAATCATCAGTGAGTCAGAGTCTTTTCAAATTGTCAGTACATCCATAACATGATTCCTAATACCTTGCATCAGTACTCTCAACTCTCTGTTCGTCCTTATTTGATGTACTTGATTGGAAGTGTTCAGAGACTTTGCATTCACCAGTTTTGGTGGCCTGGTGCTTGTATACAGCTGTCCAGAGCTGTGTTTACAGGCTATTTCGCCCAGCCTGTCGTGGCCTCTCCGTTGATATAGGCAAAGCCAGGGAAATGCTGTGAGTGTTCGTACTCTGAGTTCCTGCGCGGGCCCAGGGGGGAGTACATATCCCCAGAGGTGGCATATCGGGATGAATGCATAGGTGGGCTGGTGTAACAGCTGTTAGCTGGCGACACATCTGGCCACCGGGGGGCAACAGGTGCAGGATGCAACCGAGGAGTGCTGCCCATCAAACAAGGCTCCATTCGAGACATTTGGCCGTTGAGCTGGT

Function

symbol description
rfx4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within ventral midline development. Predicted to be located in nucleus. Is expressed in central nervous system and neural rod. Orthologous to human RFX4 (regulatory factor X4).

NR:

description
PREDICTED: transcription factor RFX4 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113529 True 1499 lncRNA 0.41 1 12897059 12898557

Neighbor

gene id symbol gene type direction distance location
slc17a8 slc17a8 coding downstream 122804 12760632 ~ 12774255 (-)
nr1h4 nr1h4 coding downstream 138268 12742142 ~ 12758791 (-)
ube2na ube2n coding downstream 160378 12730355 ~ 12736681 (-)
nudt4a nudt4,LOC100689726,LOC101064765,LOC102791978 coding downstream 169716 12712453 ~ 12727343 (-)
eea1 eea1 coding downstream 184707 12689693 ~ 12712352 (-)
si:dkey-103i16.6 LOC103374744,LOC101471570 coding upstream 16081 12914638 ~ 12931212 (-)
LOC120564143 NA coding upstream 42439 12940996 ~ 12944236 (-)
LOC120564144 LOC103374492 coding upstream 67407 12965964 ~ 12974409 (-)
LOC120563354 LOC104941983,LOC103374494 coding upstream 103563 13002120 ~ 13014975 (-)
LOC120564327 LOC104941984,LOC100534567,LOC102302869 coding upstream 118008 13016565 ~ 13026368 (-)
G84324 NA non-coding downstream 3620 12892026 ~ 12893439 (-)
G84321 NA non-coding downstream 10156 12886591 ~ 12886903 (-)
G84320 rfx4 non-coding downstream 11142 12885663 ~ 12885917 (-)
G84294 NA non-coding downstream 62488 12830356 ~ 12834571 (-)
G84243 NA non-coding downstream 208424 12687483 ~ 12688635 (-)
G84338 NA non-coding upstream 10410 12908967 ~ 12909946 (-)
G84350 NA non-coding upstream 39487 12938044 ~ 12939417 (-)
G84369 NA non-coding upstream 49717 12948274 ~ 12948609 (-)
G84370 NA non-coding upstream 50104 12948661 ~ 12948923 (-)
G84376 NA non-coding upstream 73832 12972389 ~ 12984060 (-)
G84123 cat,LOC102293651,LOC102204975,LOC102775586,LOC102293936 other downstream 752513 12141523 ~ 12144546 (-)
G84083 NA other downstream 1008661 11888027 ~ 11888398 (-)
ptpn9a ptpn9 other downstream 1636098 11173553 ~ 11260961 (-)
oaz2a oaz2,LOC104929548,LOC101470759,LOC102200097,LOC106531198 other downstream 1983842 10823286 ~ 10913217 (-)
LOC120564603 NA other downstream 2182214 10706219 ~ 10714845 (-)
G84530 LOC100696427,LOC106963151,LOC107104182,LOC107388919,LOC104956556,LOC102796452,LOC102202152 other upstream 332060 13230617 ~ 13231095 (-)
prr5a prr5,LOC103371545 other upstream 348271 13246828 ~ 13256093 (-)
LOC120564547 fbxl14,LOC103380143,LOC107388938 other upstream 427416 13325973 ~ 13385205 (-)
mafb maf,LOC104941368,LOC104940469,LOC101071510,LOC101484138,LOC103380135,LOC102219741,LOC106520304 other upstream 675274 13573831 ~ 13618786 (-)
zgc:77752 NA other upstream 1132547 14031104 ~ 14037716 (-)

Expression


Co-expression Network