LOC120563775 (cacna2d1,LOC104952157)


Basic Information

Item Value
gene id LOC120563775
gene name cacna2d1,LOC104952157
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 14501896 ~ 14558228 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU114408
ATTGTAGATAATTTGTTATTGCATGTAAATTGGAGATGCATGATATCCTTACACCACAGGTATATTAATGTATGAATACTGTATACACTGTTCACCAGTTTGTTCCTATGGCCATGTGTGCTTTCTAGGATGTACCGTGCCGAGAAGCTGCCAAACACCAACCTAGTGTTCCTGATCACTGATGCCAAGGCAACGTGTTTGTCGTGTGACCCAAGGCCGCTTCGACAGGCTGAACAACCCTCTGAAGGTCCAGATCCATGCGAACTGGCTCAGTATCCCAGATATCGCAAAGGGCCGGACGTGTGTTTCGACAACAATGAAAACGTAAGAGACAACCACACATGCCTCCTTGCAGAGAACATTGCTGGAAACAGCTCTATTAGTGAGGCTTCACAGTTGGCCTCTGTCAATTCTGTCTGGTTTTCATCAGCGTTCTGCAGAGATTCGAAGCACTGCTTGATCTTTAActactttatttattcattcagtttattattttttatattcactatttttatttcatgaatTTTGCATGCAATTGTCACtcaagtgtttttatttattttgctttatATGACCTTTTCACTCATCatctgtcatttttgttttattattctgCATCCCAATGGCTGCTGCTCTTGTCTGGTAGGATGAGCCCTTGTGTCCAATCAGCAGAGGTTCTACATTGAGCACCACACCTCTCTTATTGTTTCTGGTGCTGAGTTCAGGGTCAGTGTCCTCACACAGCTCCATGCAGACTTATTAACACAAGGATTTTTTTTCCGGCCATCGCAATGTGCTTGGCAAGGGTAAATCAGGCACTACAATGGgttttttaatgtaatgtacatttttttatttgctggGTCATCATTACTCATTCAACTCATTTTACAAACATTCAAGCAACCCCCATCCTAGTAACAACAGACTCTTACTAACCTAAAAAATTATGATGTGATGTTTGTTTATTCATGGCTGATTCACCTGAATAACTCTCAAACACATTGATTTTTGTACATTTACACATTATTtctatgtttatatattttatgttgcattttaccatTTTTTTCATACACATTAAAATAATTTGAGATGTAAATGGCCCACTAGAATTAAGTGAACAACCCACTGTAATAACAAGCAGTtggtattcatttatttgttgcaTGCTTATATCCCTAACAGAATGCTACATTTTTCTTTGGCATCTtgtttttctttagttttttttcagttttttaccCCAACAGATGGAGAGCAGATTGAATCTTGGCAGTCAATTTGATATagcattacaccaccaccaatCAATAATAGCAGCACACAACTACGTATAAATATACCTGCAACCATAATCCTTTTATTTAGCATTGTTAAATGCTTTGTCAACCAAATatgtaagtatattttgatgtattttgcCTCAAACTGAGAAGTCTTCGGGGATTGCAATGCAATATTTAGACCTGATACAGTAGCAGATGTGCTCACATGTAAGTAGATTCCCTTGCAGAGATCGGATGGAAGTTCATGTATTGTACCATTTGAGGTAAATCATTAAAACAAAGGAGGAAGGTGGATAACTCCTGTGTGAGATCATTGCATCAACACCCAACTTTGAACAGTTTACAAGACGTCTAAATATTTGGAAAAAATATTTCCCATATCTTTGAGAACTCAGCCTTTCATTGTGTTCTAAAGGCGTAGATCACACACATAACGGGCCATTTATTCATGTGCCTGCATGTTTATATTGTGGAATGGCTTTGCTTGGAAGCAAAGGCAAGGGGAGGAATGGCTGAGGAAGTAGATGAACAGAGTAAAAGTAGGCCGCGTCCCTTTTCCTCTTTCCATCTGTCCCTTTACTTTTGGCTCAGCTCCTCATAGGAAGACAGTCTGAGTCCAGTCCATTTTGTAACTGGAGTAAACAGAGGAAGCTCCACGTGGCTTTCCTGCCCTTTGAATACAGAAGGCTCCCACCTCTTTCCCCTAGGCCTTTGGCATGCACGGATATCCTGAATACTCCCATCAAACATGAAAAAAGCCACACACTGTCATAGGCAGgggcatgcacatacacatacacacacatacacaaaaagcaGAATGAGGTCCTAAGTACCTCTATAACTGCAGCAGAGcattcaaatttaaattaattttctttCCTTTCGAGAGTTAGATcaatatcaatcttctcatctaactcttgccAAGAAATTGAATAAGCATGTTTCTTCAAAAAATGACAGGTAGGCTTAAGTAAATGATATAACACAACATGATATAATATGATAGAATACCATAGGATAAGATACAATACAATCATGAACTGCTCATTATTGTTAGTAGTAAAAGTAGCGATAATGGTGGTAGTCGTAGAGCTACTGGATGTAGTTCATCTGATTGATTGACAACTGATTTGTCCAACAGGAGGATGATTCTGACTGTGGAGGTGGGACCTGCTTAAGCCCGTGTCTTTGGCCAGTGCTTGGGCTCCAACTACTGCTGCTGTGGCTTGTCACATCTTTACAACACTCATGACcctacacatagacacacacatacacacacacactcatacacttACACACTGATCATCATCTCATCAAACAAGATGCCAGAAAACACTCCAGTTATGCCATCCAGGATGTATGAAAAGTATTTGCAACAAGACATTTCATTTTCTGACGACAGTATGAGCATTTCCATTTTCCAATGCCAAAGGTTGCTCATTCATTTCCTCCTTGTCATCTTCAAAAATAGAGACACATTTACTGTGCTCAGCTGCACTCAGTTCCATGATATACTCCTTTATACTCTCTTATGGTGCAAGAGTAAGAGCTAACCAAACCCTTTAATTCTGCCTCATTTGTTTCTCTGATTTATTAAGCGGAGGTTGAAGAGTCCCACTATGCCAACTAAATATCATTCAAAGACTGTATGTTCACTGACAGCATTGATTTGTGTAGTTGTCGATATTGTTTGTTGCTTATTATACTTATTGCGTATGAATCATTATGCTgtaatgattgtttatttttgccAACCAGTGCAACTATGAAGAATATCCcttttgtttaaatgttttttaaatgtactgtacCTATTTAAATCTTTTGTACTCAAAATCAACTAGCATTACATGACAAGCTAGGTGTTGTATTGTAGCAGCATGTGCTCAGTACAGAGCTAAATACAACACCAGTACTCTGACACCAAAGCTCACACAGTACCAAGGACCACAGATACAAAGCTACTAGAGAATCTTCAGGCTAGTTTATTTTAAGTGATTCCTCACATGTGGATGTACTCCAGTATTAAAGTTACAACATTAGCTAGATAAGTAAGACGGATAGCTTAGACACCTCGCTGAGAATTAAGTGAGATCATGTGAATCAAAATCTATTAGGATATTACAATTTCAAATATGTTTGTACTTGGTCTGACAGCTTTGGTTGTCTTCAATTTGATGCATCAAATTCCCAGTGCCTACATAGTAGTTATCTGAATGAAACAATGAGTCAGAGTTGTATTCTTACCATGTACGCGTGTATGCTAATGCTTTCTGCAGTATAGCAGAGCGGGTAGTAGTAAGTTTTGAATTGGGCCAAAACTGCTGCAGTTCTTCTAATTTATTTGGTCAAGACCTCAGTAGAAACAACCAGTGATTTTGATTGTAGTAGAGGAATATCATGTTCCTCCATGGTCAAAACAAACCTAAACCAGACTTGAGCTTTGCGTTCCAACACCTCTCTCTTTTAGTCCTGTTTCTGTTCCCTTTCTGGATCGCCAAGATGACTTGTGAATGAGATCAGCATATCAAAATGACTGTTTCTTTATATTCTTCTTCTTGCTGTTCTCCTCCTTTTGCTTGTTTCCTCTTTGTTTTAGTGCTGTGAAGCTGCAATGTCATGGGATGAGCTTGTTCTGTGTTTGAACGCTGTCTATGCCTATGGTCAGCATTAGGGCCTGTTGGAGAGAACTTTGAGAATATACTACTACCAGTGGTAATTTTGCATTGCCATAAGTCATAGAAATCACACTTAAGTGTtacatttttcctcttttttagCTATTTTAACAATTAAAATTGAGTTCTCTCCACCTCGCCTTCATGTTGACCTTGTTGAGTGTTCAGGTTATGCCTGTCTATCAAAGTTGTGTGTTGACTTGTGTTTTACCAAGGGGATCCCGTGTCTATGTGCAGGCATGTGTGTGCCCCTCTGATATCTGATTGTGCTTTAATACTGTACATGAATTACTCTTTTGTGGAACTTGACTAGCCTgaatacattttgtatacatttgtacACTAAtaatatttactgtataaaagagaaaaatgaaagaaaagaaaaatgtttataATA
>XM_039808182.1
TTTCTGAAAAACCAGCACCTGTACAGTGTTGAGCAAAACGACGCAGAGGAGCTGGTGGCCAGAGCAGCCACGAAAATTGAACAGCTGCTGCGGAAGAGATCTGCTGCCTTGGAGAAACTGGCCACAGCTGCCGAGAATTTCCAGATGCAGCATAACTGGAAAGATGAGTTTGAGGGTGATGAAATCTCCTACTACAATGCAAAGGACAATCTGGATGCAAATGAGACAGAGGGAAGAAAATACAGGATTCGACCAGACTTTATAGAGGATCCATCATTTAAACGTTTGACTGATCACAACCACACGGCTGTCCACATCCCCACTGACATCTATGATGGCtCCACCATTGTGCTGAATGAACTGAACTGGTCGGAGGCACTGGAGGACGTGTTTAGGAAGAACAGAGAGGATGACCCAACCCTTCTCTGGCAGGTGTATGGTAGCGCTACGGGCCTGGCTCGCTACTACCCagCTTCTCCCTGGATGGATGCTCGCAAGACCCCAAGTAAAATTGATCTGTATGATGTCCGCAGGAGGCCATGGTACATTCAAGGAGCTGCCTCACCCAAAGATATGCTAATCCTTGTGGATGCaagCGGGAGTGTGTCTGGCTTGACTCTCAAACTGATCAGGACCTCCGTCAGTGAGATGCTGGAGACTCTGTCTGATGATGACTATGTCAATGTAGTTTACTTTAACACCAGGGTGAAGAAGACGGCGTGTTTCGACCATCTGGTTCAAGCCAATGTGAGGAACAAGAAGGTGCTGAAGGATGCTGTTCAGAACATCACAGCTAAAGGAATTACAAACTACACAAAAGGCTTTGAGTTTGCTTTTGAGCAACTCTCTACAacgAATGTGAGTAGAGCAAACTGCAACAAGATCATCATGCTGTTTACTgacggaggagaggaaagagctCAGGCCATACTGGAGAAGTACAATGCTGACAAAAAGGTGAGGATCTTCACCTTCTCAGTAGGACAGCACAACTATGATAAAGGACCCATTCAGTGGATGGCCTGTTCCAACAAAGGTTACTTCTATGAGATTCCTTCCATCGGAGCCATCAGAATAAACACACAGGAGTACCTGGATGTCCTAGGCAGACCAATGGTTTTGGCAGACAAGCAGGCCAAACAAGTCCAGTGGACTAATGTTTACCTTGATGCTTTGCAACTGGGTCTGGTCATCACTGGGACACTACCTGTCTTCAATAAAACGAAGACCAAAGATGACAGGAATGGCGAGCACCAGAATCAGTTGATTCTTGGCGTAATGGGGATTGACGTGTCTCTGGATGACATCAAGAAGCTCACACCACGCTTCACAATTGGTCCAAATGGATACTACTTTGCCATTGATCCCAATGGATATGTCCTGCTGCACCCCAATCTCCAGCCAAAGGAAAGAATTCGTAACAGGAAGCTCAGGCTAAATAATAAGTATGCTGTCACTTTTCACGAGGAACCAGTTACCCTAGACTTCCTGGATGCTGAGCTGGAGAATGACATCAAAGTGGAGATCAGAAGAATGATGATCGATGGTGAGACAGGCGAACGCACCATTGACACTCTGGTGAAAACTCAGGATGAGAGGTACATCGATAGAGGATCCCGGACCTACACGTTTGCCCCGGTCAATGGAACAGATTACAGCCTGGCTCTTGCTCTGCCTCCATACAGTGAACACTTCATTCAAGCTAAACTGGGGGACAACATGAAAAAAGCTATGTCTTCTTCTTGGGGGCAAGAAGccATGGAAACCATACAGCAGGAGAGGTTTGATGAGTTTGGTTACACCTACATCGCTCCAAGGGCATACTGCAAAGAGCTGAAGTTGTCACTCAACAACACCCAGTTTCTCCTCGACTTCAGCCAGTACATTGATAGGAACACTCCAGATGCATGTAATGTTTCCCTGGTGAATCGACTAATCCTGGATGCAGGTCTGACAGCTGAACTGGTTAAACTTTGGAATGAGCAGACAGTGGATGGGATAGTGGCCAGGTTTGTAGCCACAGATGGAGGAATCACAAGAGTCTATCCAAGAAGTGCTGGGGAAGAGTGGACTGAGAATCCTGAGACATATGAGTCCAGCTTCTACAAAAGGACCCTGGACAATGAAATTTATATTTTCACAGCTCCGTCTTTCAACCCAGAAAGCAGGGAGCCTGTTTCTGACTCAGGTATTCTAGTGAGCAAAGCAGTGGACATCACGATTGACAAAGTCACGCTCAAACCAGCTGTGGTTGGAGTGAAACTCAATATCTCATTCTGGATGAACAGTTTCATGAATGCTACAATGAAACTTAATTGCAAGGATGAGATCTGTGGCTGTCTGAGGAATGACAAGCATGTAGACTGTGTGATCCTGGATGATGGGGGATTTCTTCTCATGTCCAACCAGGATGAGTATATCTCCCTGATAGGTCAGTTCTTTGGCGAGGTGGACCCTGTGCTGATGATCAACCTGGTCAACACCTCCCTGTACTCCTTCAACAAGACCTACGACTACCAGTCTGTCTGCGACCCAGAGAAAGACAGCAAGGCCGCAGCAGGACCCCGCTCCGTCTATGTGCCTACCATTGCAGACCTGCTCAGTATTGGCTGGTGGGCCTCCACTGCTGCCTGGTCGATACTCCAGCAGCTCTTCTTTGGTCTCATGTTCCCCAACCTTCTAGAGGCAGCGGAGTCAGCAGATGATGACATACCAGATGCCATGTTTAAGGAAAGCTGCATCACAGAGCAGACTCAGTACTTCTTTGACAATGATGAAAGATCCTACTCAGGTGTCCTGGACTGTGGAAACTGTTCCAGGATGTACCGTGCCGAGAAGCTGCCAAACACCAACCTAGTGTTCCTGATCACTGATGCCAAGGCAACGTGTTTGTCGTGTGACCCAAGGCCGCTTCGACAGGCTGAACAACCCTCTGAAGGTCCAGATCCATGCGAACTGGCTCAGTATCCCAGATATCGCAAAGGGCCGGACGTGTGTTTCGACAACAATGAAAACGATGAGCCCTTGTGTCCAATCAGCAGAGGTTCTACATTGAGCACCACACCTCTCTTATTGTTTCTGGTGCTGAGTTCAGGGAGGATGATTCTGACTGTGGAGGTGGGACCTGCTTAAGCCCGTGTCTTTGGCCAGTGCTTGGGCTCCAACTACTGCTGCTGTGGCTTGTCACATCTTTACAACACTCATGACcctacacatagacacacacatacacacacacactcatacacttACACACTGATCATCATCTCATCAAACAAGATGCCAGAAAACACTCCAGTTATGCCATCCAGGATGTATGAAAAGTATTTGCAACAAGACATTTCATTTTCTGACGACAGTATGAGCATTTCCATTTTCCAATGCCAAAGGTTGCTCATTCATTTCCTCCTTGTCATCTTCAAAAATAGAGACACATTTACTGTGCTCAGCTGCACTCAGTTCCATGATATACTCCTTTATACTCTCTTATGGTGCAAGAGTAAGAGCTAACCAAACCCTTTAATTCTGCCTCATTTGTTTCTCTGATTTATTAAGCGGAGGTTGAAGAGTCCCACTATGCCAACTAAATATCATTCAAAGACTGTATGTTCACTGACAGCATTGATTTGTGTAGTTGTCGATATTGTTTGTTGCTTATTATACTTATTGCGTATGAATCATTATGCTgtaatgattgtttatttttgccAACCAGTGCAACTATGAAGAATATCCcttttgtttaaatgttttttaaatgtactgtacCTATTTAAATCTTTTGTACTCAAAATCAACTAGCATTACATGACAAGCTAGGTGTTGTATTGTAGCAGCATGTGCTCAGTACAGAGCTAAATACAACACCAGTACTCTGACACCAAAGCTCACACAGTACCAAGGACCACAGATACAAAGCTACTAGAGAATCTTCAGGCTAGTTTATTTTAAGTGATTCCTCACATGTGGATGTACTCCAGTATTAAAGTTACAACATTAGCTAGATAAGTAAGACGGATAGCTTAGACACCTCGCTGAGAATTAAGTGAGATCATGTGAATCAAAATCTATTAGGATATTACAATTTCAAATATGTTTGTACTTGGTCTGACAGCTTTGGTTGTCTTCAATTTGATGCATCAAATTCCCAGTGCCTACATAGTAGTTATCTGAATGAAACAATGAGTCAGAGTTGTATTCTTACCATGTACGCGTGTATGCTAATGCTTTCTGCAGTATAGCAGAGCGGGTAGTAGTAAGTTTTGAATTGGGCCAAAACTGCTGCAGTTCTTCTAATTTATTTGGTCAAGACCTCAGTAGAAACAACCAGTGATTTTGATTGTAGTAGAGGAATATCATGTTCCTCCATGGTCAAAACAAACCTAAACCAGACTTGAGCTTTGCGTTCCAACACCTCTCTCTTTTAGTCCTGTTTCTGTTCCCTTTCTGGATCGCCAAGATGACTTGTGAATGAGATCAGCATATCAAAATGACTGTTTCTTTATATTCTTCTTCTTGCTGTTCTCCTCCTTTTGCTTGTTTCCTCTTTGTTTTAGTGCTGTGAAGCAGACGCTGAGGGCTCGGTGTCGAAACGCTGCAATGTCATGGGATGAGCTTGTTCTGTGTTTGAACGCTGTCTATGCCTATGGTCAGCATTAGGGCCTGTTGGAGAGAACTTTGAGAATATACTACTACCAGTGGTAATTTTGCATTGCCATAAGTCATAGAAATCACACTTAAGTGTtacatttttcctcttttttagCTATTTTAACAATTAAAATTGAGTTCTCTCCACCTCGCCTTCATGTTGACCTTGTTGAGTGTTCAGGTTATGCCTGTCTATCAAAGTTGTGTGTTGACTTGTGTTTTACCAAGGGGATCCCGTGTCTATGTGCAGGCATGTGTGTGCCCCTCTGATATCTGATTGTGCTTTAATACTGTACATGAATTACTCTTTTGTGGAACTTGACTAGCCTgaatacattttgtatacatttgtacACTAAtaatatttactgtataaaagagaaaaatgaaagaaaagaaaaatgtttataATATGGTGTTGATTATTGTGCAAATATAATATATTCACAATAAAAGTGTTGTATTGTTATGACCTGA

Function

symbol description
cacna2d1 Contributes to voltage-gated calcium channel activity involved in bundle of His cell action potential. Involved in several processes, including cardiac conduction; cellular response to amyloid-beta; and regulation of ion transmembrane transport. Located in extracellular exosome. Part of L-type voltage-gated calcium channel complex.

NR:

description
PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X1

GO: NA

KEGG:

id description
K04858 CACNA2D1; voltage-dependent calcium channel alpha-2/delta-1

RNA

RNA id representative length rna type GC content exon number start site end site
TU114408 False 4379 TUCP 0.38 3 14501960 14507201
XM_039808182.1 True 5127 mRNA 0.44 40 14501896 14558228

Neighbor

gene id symbol gene type direction distance location
LOC120564472 hgf,LOC102789882 coding downstream 21110 14463359 ~ 14480786 (-)
LOC120564497 NA coding downstream 225819 14273629 ~ 14276077 (-)
LOC120564658 NA coding downstream 249927 14245220 ~ 14251969 (-)
frmd4a frmd4a,LOC102793558 coding downstream 303773 14110466 ~ 14198123 (-)
terb1 terb1 coding downstream 411303 14079176 ~ 14090593 (-)
LOC120563540 NA coding upstream 14503 14572731 ~ 14617358 (-)
LOC120563776 NA coding upstream 59063 14617291 ~ 14632303 (-)
sema3e sema3e coding upstream 84610 14642838 ~ 14667500 (-)
sema3ab sema3a coding upstream 125219 14683447 ~ 14708118 (-)
sema3d sema3d coding upstream 199751 14757979 ~ 14795130 (-)
G84776 NA non-coding downstream 136498 14365192 ~ 14365398 (-)
LOC120564348 NA non-coding downstream 216934 14283896 ~ 14284962 (-)
G84762 NA non-coding downstream 236910 14264725 ~ 14264986 (-)
G84761 NA non-coding downstream 238155 14263416 ~ 14263741 (-)
G84760 NA non-coding downstream 238781 14262703 ~ 14263115 (-)
G84960 NA non-coding upstream 230 14558458 ~ 14567269 (-)
LOC120564774 NA non-coding upstream 249183 14807411 ~ 14808068 (-)
G84971 NA non-coding upstream 293492 14851720 ~ 14852023 (-)
G84948 NA non-coding upstream 395900 14954128 ~ 14955407 (-)
G85007 NA non-coding upstream 499497 15057725 ~ 15057929 (-)
LOC120564470 NA other downstream 264944 14223197 ~ 14236952 (-)
zgc:77752 NA other downstream 464180 14031104 ~ 14037716 (-)
mafb maf,LOC104941368,LOC104940469,LOC101071510,LOC101484138,LOC103380135,LOC102219741,LOC106520304 other downstream 883110 13573831 ~ 13618786 (-)
LOC120564547 fbxl14,LOC103380143,LOC107388938 other downstream 1116691 13325973 ~ 13385205 (-)
prr5a prr5,LOC103371545 other downstream 1245803 13246828 ~ 13256093 (-)
si:ch1073-390k14.1 LOC103375950 other upstream 403632 14961860 ~ 14967783 (-)
G85014 ppp6r2,LOC103370604 other upstream 507811 15066039 ~ 15073350 (-)
ttc23 LOC104957250 other upstream 914706 15472934 ~ 15484145 (-)
G85133 mef2a,mef2aa,LOC107553916 other upstream 956550 15514778 ~ 15544082 (-)
chd2 chd2 other upstream 1597756 16155984 ~ 16187336 (-)

Expression


Co-expression Network