ttc23 (LOC104957250)


Basic Information

Item Value
gene id ttc23
gene name LOC104957250
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 15472934 ~ 15484145 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU114636
CCAGTGTTCCTCCAGGAAAGGCTTTTCTATGTTCTCTGTGCTTTTATAGTTATGGATACTCTAGCTAGTTCAGTCCCGTAACGACAGCCCACTGTCATATATCTATGGCTGTAAGTGACGTGCTTTTAGTTTTAGAGTTGCATTTTAGGTACCATAGCGTAAGGTAAGCACAACCATCTGAAACAGCATCACCAGACGCTAGCAAGCGCACTAGCGCAGTGTAACCACGGAAACAAAAACGTAAAGAACACAAACGCTTATGGCGTGGTTAAAGTTACATCCACAAGCTGTCATTGATGGTTTGtaaaattagctagctagctaaagagAATGGCTGATGAACTCGcaatgacaaaaacacaaccCAGTTCCTCCGAGTCTCCGCCGGCTGAATCCCCTGAAATCATGGGATGCACCAACAGGGGAATGAATGCATCTCCTCCCTGTTCCTCAGAAGTGTTGAGTCCCTCACAAACCGGATATGCTAAAAAGGAATTTATGAGGATGGCACCTAAAGAAAAGCTCAAACattttgacagccaggctcagGCCCGTGAAGACATCAAAGAGGCTGGGGACTGCAGGCCCAGGAGCACTCGGCTCTGGCCAGAGAAGTGCTGCCTTTCTGCCCCTCCATCTCTTCCTCCAGAGGTGAAAATCTCGAGGTTCTCATGTGTCTACTGAACGTACACCTCACACAGGGAGGCGCTTCACTGCTTACATCCAAATTTGAGGAGGCCGAATCCTCTTTTCTGGAGGCAGAACTTGTTCTTGAGGAGCTTCATCAACATGGTGGCATCAACCAGGAAGAGAAGATGAAGACTGCGCTGGAAATCTCCACTGGTCTATCCAGGTTCAGTAGtgcaaaaacaatgtttttagcAGCAGCAGTACATAGCAGATATATTgtaagaaatatataaatatttgcaGCCTATAGTAATAGCAGCTGAGCCAAATAAGTTTTTGCGCTATTGCCGATTAAAAGGTGTCAGGTCTTTCTAGAGGAGATTCAGAGTATAGCCtgaattttacattttcagctattgttattataacaattattttttctcaAACTCTATTAATTTCAAAAGCAGTAGGCTACCTTGCGTTTAAGTTTGGCCACAAGATGGCGATATATTCTAGCAAATTCACATAaaatctaaccctaaccctacctTTCACATGTTTTTCTGAGTGGAGGGTTTTTTGCTAACTTGGTTTTGCCAGTAAAAACACCATTATTTCATGTTCTCTTACAAACAACAGCTTAACAAATCAGGATTTCCCCCCTGTGGTTGTCCAGTCCACTCAGCACTCGGCGTGGGTGTGCTGTAATAATGCTTACAGACCTGCTGGGTGGGGTTTCTGCATGTCCACTCATACAGTCACTGCTCAAGCAGAGGCACAGATGGGAGAGAggcttttctcctctttttttaaaagcatttctcccttttctccatATGCGTTCTGCatgtttccctttttttctctaGCTTTGACTCCCTCCTTAATTATAAACTCCCCTCACCACATACCACAGTAAGTAATTGCCTTTGCAGTCTGGTCCTTGAGATATTGTAAAGTTCTTTAATTCTCTGTAAAGTGTCAGCTGCTTTGTTTACGTCACACAGAGTACTATTTCCATATTATTGATTTGTGTCTACCATTTTACAATGTGCATGTTTAACCTGGTGGTGGTATTGACAACAGAGGGCAGTACTATATGCTcaggaaaagattaaagacTTAGTGGATCATGGTGGAGACACCAAGCACAGACATCAGGTGTAGGAGAGTCAGATAGTCTGTTAAGGGAACTGTGTGGCCTGGCAATATAAAAATAGCAGCCGCTTCTCATAGTTTAGATCACTGTGGGTGAAATTAGAAGCACAACCAGGAAATAAAGTATAGTCTTACCTGGGTTGAGATCACCCCACTAATGTATTTATGTTAATTTGGATCCTGTTAATCCTTGTATGTGAAATGTATAATTTCCACATGAGTGCTTGTAGCAtatacattttgtcaaaaaaaaaaaaaaaataaaaaatacaggcTCGTCTCCATAAAAACATTTGACAACCTCACAATGTTTGTGTTACAAAGCTGACCTATACTGTCATAATTTGGATCAGGTTTTTTTTAggtattttaggcctttattttcgaCAGGACagtttagacttgaaaggggagagagagtaggaatgacatgcagcaaagggccgcaggtcggagttgaacccgtggctgctgcgtcgaggaataagcctctttatatgggcgcgctctaccaggtgagctacccaggcgcccttgGATCACTTCTTTAAACGTTTTTCTTAGTTTTAGTGAGGAAACATGAGTATTTAAGCAAAGATGGTAGTTGGGTGACAATGTTTTAACATGGGACCCCATCTTACAGGTAATCTAAGGTAAATAAAAGTAGGACCCAATGTTTTAAAAATCCTGTTGCAGGGTAAATACGAGCAATACTCGTGCCGCATCTACAGTAAAGAAGCCTTATCAGCAGCTGAGGTGAGCTACACTGATAGGTATTTGTAAGTGACGCCATCTTGGTCTGTTTTAGAGAGTCAGAGTTTGTTGACATGATGTGTGTAATTGAAAAAATGTGCAGACTCTGGCTGGTGTGTAAGCTTGCTAAATCTCTTTTGTTAGGTGATGACTAAGAATTTGGCATGCTTCTAAAGCTCTGTCAGTCAGCACTGTTGTGATGGAGGGGAATGTTCCCACCAAAACCTGCAACAATAAAGTAAGCTCAGCTCTCTTATAGATCCTGGTCCAAAAATTCTGCCCGGTTTTAGATTCCCACTCAAGGTGTTGTCATGAACCAGCTCAAAGTTATGACAAAAACAAGGGAAAGCATAC
>XM_039808556.1
ATGAGGCCAGGAGGAGCAGTTACGCAGTTAACTTTACGCCTAGTGTGTCTAACGTTACCTACCTAAAAATAATAGGCGTATTTTCAGCTTTTGTCACGGTTTAAGTCGAACATTTGTTGTCATAGTCATTAATCACACTTTAAAGCCATctaaattgttgttgtttttttaagaacagCGCAGTTCTTGAATGCACCCCACTTCCTTCCTGCGAATGTACCAGTGTTCCTCCAGGAAAGGCTTTTCTATGTTCTCTGTGCTTTTATAGTTATGGATACTCTAGCTAGTTCAGTCCCGTAACGACAGCCCACTGTCATATATCTATGGCTGTAAGTGACGTGCTTTTAGTTTTAGAGTTGCATTTTAGGTACCATAGCGTAAGGTAAGCACAACCATCTGAAACAGCATCACCAGACGCTAGCAAGCGCACTAGCGCAGTGTAACCACGGAAACAAAAACGTAAAGAACACAAACGCTTATGGCGTGGTTAAAGTTACATCCACAAGCTGTCATTGATGGTTTGtaaaattagctagctagctaaagagAATGGCTGATGAACTCGcaatgacaaaaacacaaccCAGTTCCTCCGAGTCTCCGCCGGCTGAATCCCCTGAAATCATGGGATGCACCAACAGGGGAATGAATGCATCTCCTCCCTGTTCCTCAGAAGTGTTGAGTCCCTCACAAACCGGATATGCTAAAAAGGAATTTATGAGGATGGCACCTAAAGAAAAGCTCAAACattttgacagccaggctcagGCCCGTGAAGACATCAAAGAGTTTGATGCTTGCATCCAGGACCTGGTGCGTTGTGTGGCTCTGACTAGGCTGGTGCATGGGGATGGACATCTGAAACTAGCCCAGGCACATGCCAGACTGGCTAAAGCATATTTTAAGTTCAAAGGCTGGGGACTGCAGGCCCAGGAGCACTCGGCTCTGGCCAGAGAAGTGCTGCCTTTCTGCCCCTCCATCTCTTCCTCCAGAGGTGAAAATCTCGAGGTTCTCATGTGTCTACTGAACGTACACCTCACACAGGGAGGCGCTTCACTGCTTACATCCAATCTTGAGGAGGCCGAATCCTCTTTTCTGGAGGCAGAACTTGTTCTTGAGGAGCTTCATCAACATGGTGGCATCAACCAGGAAGAGAAGATGAAGACTGCGCTGGAAATCTCCACTGGTCTATCCAGGGTCTATAGGAGACAGAACAGACCAGAGGAGGCCTTAAGCCAGTGTGAGAAGTCTCTGCAACGGCTGAAGGACTGTGGTAAGCCAGAGAAGACCTCTTCGGTCTATAGGGACATGGCCGCCATTGAACAGGACAGAGGTCATTTGGACCAAGCCATAGAGCATCTCTCCAAGGCTCATGCCATTGCTATGAGTCACAGCCCAGAGGAGCTAGAGGGGGCTCAGATCTCCCACAGCCTGGCCCTCatcctttctgctgcagcagaGCCCCATCACAATGACTCTGCAGGTCACTACTTTGAGCAGAGTCTGAGTGCATACAAAAACTCTGTAGGTCCACAGGATCCAGCTTTTCTCGCGGCCCAGGATGATTTCTGTCGTTTCCTCCTCCTCAGTGGCCACAAagagAGATGTGTGGAAATCCAGAGAGCTTCTCTCGCAACTAAGAGTTCTACTTTCGGTGACCTGAGTGCTGAGGTAGCAGACACCCTTCAGCTGATAGGAAGTATGGAGATGAGTGAGGGCAGGGTGAAGCAGGCCCACAGGACCATGACAAAGtGCCTGGAGATCCAGAGTTTGTTGTACGGTCCTCAGCACAAGACGACAAAAGCTACACAAAAAGCTGTGGACATGCTGGCCCGGGCACCAGAGGTAGCTGAGAGACAACAGAGGCAAGGTATAAGGAAAACAAAACGTCACACACTTTCAGTTGTACCATCCAGTAGCAATTATGGAAACTCAATGTCtgactcttaaaatgttttgtcaGTACAATAATCTTGCAGGTTTGTACCAAGAAATACTgacatatgtttgttttttttaagaagtttgtctgtctgttagaTAATACAGGCAGCTACCACTGCTGAAAATTAGCTTAAATCGCATTAGTCATGTCCACTGGcattacatgtatgtgtgtcacTTTGAAGAAATACTCACACTCAGAAAACATACCAACAATAGGTTTTAATTGTGTTAAGATATGAATCAGTTTCCAAATAAGGGctggaactttttttttgtatccaaaGCAATAATGCCATGTGTTCAATATAAATCATTATGTCAATAAAAGCAATGGTGTTGGACTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114636 True 2895 TUCP 0.42 4 15478982 15483926
XM_039808556.1 False 2291 mRNA 0.46 11 15472934 15484145

Neighbor

gene id symbol gene type direction distance location
pgpep1l LOC103364746 coding downstream 9220 15456807 ~ 15463714 (-)
cd9a NA coding downstream 155089 15310877 ~ 15317845 (-)
syt1b syt1,LOC100710649,LOC102779835,LOC103358504 coding downstream 168654 15298687 ~ 15304280 (-)
otogl otogl,LOC102779350 coding downstream 180972 15262486 ~ 15291962 (-)
ptprq ptprq,LOC107705767 coding downstream 211121 15219750 ~ 15261813 (-)
nr2f2 nr2f2,LOC107388818,LOC100705923,LOC108230091,LOC102227842,LOC104957255,LOC106930729,LOC105023478,LOC106573769 coding upstream 318279 15802424 ~ 15811999 (-)
slco3a1 slco3a1 coding upstream 729630 16213775 ~ 16254088 (-)
LOC120563512 LOC104964038,LOC103375536,LOC102794895 coding upstream 896798 16380943 ~ 16409443 (-)
zgc:162879 LOC104964034,LOC103368560,LOC100692867 coding upstream 967888 16452033 ~ 16461232 (-)
sema4ba sema4b,LOC103368553,LOC100693140,LOC101470126 coding upstream 978410 16462555 ~ 16549024 (-)
G85125 NA non-coding downstream 77 15466582 ~ 15472857 (-)
G85121 LOC103364747,LOC103358513 non-coding downstream 14021 15455655 ~ 15458913 (-)
LOC120563610 NA non-coding downstream 16380 15455840 ~ 15456554 (-)
LOC120563611 NA non-coding downstream 17420 15453209 ~ 15455514 (-)
G85084 NA non-coding downstream 109509 15361837 ~ 15363425 (-)
LOC120563424 NA non-coding upstream 374696 15858841 ~ 16048241 (-)
G85250 NA non-coding upstream 773830 16257975 ~ 16258235 (-)
G85253 LOC104921699,LOC103367513,LOC104941665,LOC101473242 non-coding upstream 791506 16275651 ~ 16277412 (-)
G85312 NA non-coding upstream 886856 16371001 ~ 16372919 (-)
G85319 NA non-coding upstream 977417 16461562 ~ 16462518 (-)
G85014 ppp6r2,LOC103370604 other downstream 399584 15066039 ~ 15073350 (-)
si:ch1073-390k14.1 LOC103375950 other downstream 505151 14961860 ~ 14967783 (-)
LOC120563775 cacna2d1,LOC104952157 other downstream 914706 14501896 ~ 14558228 (-)
LOC120564470 NA other downstream 1235982 14223197 ~ 14236952 (-)
zgc:77752 NA other downstream 1435218 14031104 ~ 14037716 (-)
G85133 mef2a,mef2aa,LOC107553916 other upstream 30633 15514778 ~ 15544082 (-)
chd2 chd2 other upstream 671839 16155984 ~ 16187336 (-)
st8sia2 fam174b,st8sia2,LOC100690985,LOC101474125,LOC102798331 other upstream 704708 16188853 ~ 16209186 (-)
G85321 NA other upstream 955229 16439374 ~ 16440965 (-)
LOC120563869 frmd5,LOC104917831,LOC102299895,LOC106561170 other upstream 1212950 16697095 ~ 16763718 (-)

Expression


Co-expression Network