G85133 (mef2a,mef2aa,LOC107553916)


Basic Information

Item Value
gene id G85133
gene name mef2a,mef2aa,LOC107553916
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 15514778 ~ 15544082 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU114652
CTCTACAATGTCAGAGTTGGTTCTGCTCTCATGGGGCTCGTTGTACTCTGTGTATTTCAGCAACACTTTGTCCATGTCTGTGCTGGCATACTGGAACAGTTTGTTAGAGCTGTTGAAAATGATGAGGGCTATCTCACAGTCACATAGTACGCTCAGCTCATAGGCCTTTTTCATCAGGCCAAACTTCCTCTTTGTGAAGGTAACCTGCCTGTTCCTCTCATCCATGATCCTGGTGATCTGTATCTTCTTCCGCCCCATGGCTGCGTCCTTTCCAGTCTCTCTGACACCTCAACAATATCAGAAAAACAACACGATTTCTTCCCGCACTCTCCTAGCACATCGTGCAACAGTCTCTCTTCTTGTATACACTCTTTCTTCTGTCTTCGCAATGCGCTCTTCGACAGACCACACCACAATGTTTGTCGTTGTTGCACAAACACCTTCACAGAACCTGCTGTTCCAAGCTCCACTCCCCCCCTACAAGGTTTGGCTTTCTTTatctcttcctttctttctgtctACAACACTTCCTCTTCTTTCTGCTGCCTTTGTTTCACTCTGCCCATTGATTTACCTCAAAGCCAGACCAGCTGGCTTTGGATGCTTCCCTCAGAGCCCTAAGAGGCCCGTCTTCACACGCTGTTCCTCCTCTTGTCCCTTGGTCTTT
>TU114653
CTCTACAATGTCAGAGTTGGTTCTGCTCTCATGGGGCTCGTTGTACTCTGTGTATTTCAGCAACACTTTGTCCATGTCTGTGCTGGCATACTGGAACAGTTTGTTAGAGCTGTTGAAAATGATGAGGGCTATCTCACAGTCACATAGTACGCTCAGCTCATAGGCCTTTTTCATCAGGCCAAACTTCCTCTTTGTGAAGGTAACCTGCCTGTTCCTCTCATCCATGATCCTGGTGATCTGTATCTTCTTCCGCCCCATGGCTGCGTCCTTTCCAGTCTCTCTGACACCTCAACAATATCAGAAAAACAACACGATTTCTTCCCGCACTCTCCTAGCACATCGTGCAACAGTCTCTCTTCTTGTATACACTCTTTCTTCTGTCTTCGCAATGCGCTCTTCGACAGACCACACCACAATCTg

Function

symbol description
mef2aa Enables transcription cis-regulatory region binding activity. Acts upstream of or within several processes, including myofibril assembly; positive regulation of macromolecule metabolic process; and somitogenesis. Predicted to be located in nucleus. Is expressed in cardiovascular system; myotome; nervous system; pharyngeal arch; and somite. Human ortholog(s) of this gene implicated in dilated cardiomyopathy. Orthologous to human MEF2A (myocyte enhancer factor 2A).
mef2a Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; enzyme binding activity; and protein heterodimerization activity. Involved in several processes, including ERK5 cascade; positive regulation of cardiac muscle hypertrophy; and regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Part of transcription regulator complex. Implicated in dilated cardiomyopathy.

NR:

description
PREDICTED: myocyte-specific enhancer factor 2A isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114652 True 667 TUCP 0.48 3 15514778 15544082
TU114653 False 420 lncRNA 0.47 2 15536171 15544082

Neighbor

gene id symbol gene type direction distance location
pgpep1l LOC103364746 coding downstream 51064 15456807 ~ 15463714 (-)
cd9a NA coding downstream 196933 15310877 ~ 15317845 (-)
syt1b syt1,LOC100710649,LOC102779835,LOC103358504 coding downstream 210498 15298687 ~ 15304280 (-)
otogl otogl,LOC102779350 coding downstream 222816 15262486 ~ 15291962 (-)
LOC120563965 ptprq coding downstream 277162 15234332 ~ 15237616 (-)
nr2f2 nr2f2,LOC107388818,LOC100705923,LOC108230091,LOC102227842,LOC104957255,LOC106930729,LOC105023478,LOC106573769 coding upstream 258342 15802424 ~ 15811999 (-)
slco3a1 slco3a1 coding upstream 669693 16213775 ~ 16254088 (-)
LOC120563512 LOC104964038,LOC103375536,LOC102794895 coding upstream 836861 16380943 ~ 16409443 (-)
zgc:162879 LOC104964034,LOC103368560,LOC100692867 coding upstream 907951 16452033 ~ 16461232 (-)
sema4ba sema4b,LOC103368553,LOC100693140,LOC101470126 coding upstream 918473 16462555 ~ 16549024 (-)
G85125 NA non-coding downstream 41921 15466582 ~ 15472857 (-)
G85121 LOC103364747,LOC103358513 non-coding downstream 55865 15455655 ~ 15458913 (-)
LOC120563610 NA non-coding downstream 58224 15455840 ~ 15456554 (-)
LOC120563611 NA non-coding downstream 59264 15453209 ~ 15455514 (-)
G85084 NA non-coding downstream 151353 15361837 ~ 15363425 (-)
LOC120563424 NA non-coding upstream 314759 15858841 ~ 16048241 (-)
G85250 NA non-coding upstream 713893 16257975 ~ 16258235 (-)
G85253 LOC104921699,LOC103367513,LOC104941665,LOC101473242 non-coding upstream 731569 16275651 ~ 16277412 (-)
G85312 NA non-coding upstream 826919 16371001 ~ 16372919 (-)
G85319 NA non-coding upstream 917480 16461562 ~ 16462518 (-)
ttc23 LOC104957250 other downstream 30633 15472934 ~ 15484145 (-)
G85014 ppp6r2,LOC103370604 other downstream 441428 15066039 ~ 15073350 (-)
si:ch1073-390k14.1 LOC103375950 other downstream 546995 14961860 ~ 14967783 (-)
LOC120563775 cacna2d1,LOC104952157 other downstream 956550 14501896 ~ 14558228 (-)
LOC120564470 NA other downstream 1277826 14223197 ~ 14236952 (-)
chd2 chd2 other upstream 611902 16155984 ~ 16187336 (-)
st8sia2 fam174b,st8sia2,LOC100690985,LOC101474125,LOC102798331 other upstream 644771 16188853 ~ 16209186 (-)
G85321 NA other upstream 895292 16439374 ~ 16440965 (-)
LOC120563869 frmd5,LOC104917831,LOC102299895,LOC106561170 other upstream 1153013 16697095 ~ 16763718 (-)
trnah-gug_10 NA other upstream 1220633 16764715 ~ 16764786 (-)

Expression


Co-expression Network