G85361 (rasgrf1,LOC108230026,LOC106514342,LOC106921433,LOC103147845,LOC101158694)


Basic Information

Item Value
gene id G85361
gene name rasgrf1,LOC108230026,LOC106514342,LOC106921433,LOC103147845,LOC101158694
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 16654938 ~ 16655754 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU114962
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgctctCCATACCTGCTTTTCCAAACACTCCTTGGCTGACTGTGAAGGTTTTGGTGAAGGCGCCCTGTCGCATAAGCATCCCTCCAACAGGTATAATCCCGAGGGTCGAGAGCTGGACTCGTTCTCAAAATAAAAGAGCATATTTTGTAACAAAGCAAACCACTTTGTGTGCCATTTCGTGTTGTCTGAGCTTTTTTTGCTCAAGCACCCTCGTCTTGTACCATCCTTTTTCGCCATATGCCCCAGGTAGGTGACATGACCATCATTAAGTCGTATTCCCTTCTGCATTTTGATGAGAAGACTTCAGCTGCGCAAGGTGGATCGGTCGTTACATCCTTCTGAAGTCGCTCCAGGGAAAATAGAATCCAGAAAGACAAGATGTTGA

Function

symbol description
rasgrf1 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within regulation of Rho protein signal transduction and small GTPase mediated signal transduction. Orthologous to human RASGRF1 (Ras protein specific guanine nucleotide releasing factor 1).

NR:

description
PREDICTED: ras-specific guanine nucleotide-releasing factor 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114962 True 437 lncRNA 0.47 2 16654938 16655754

Neighbor

gene id symbol gene type direction distance location
ankrd34c ankrd34c coding downstream 44035 16607362 ~ 16610903 (-)
idh2 idh2,LOC104917827,LOC105932345,LOC107100590,LOC103147849,LOC103466626 coding downstream 60752 16581508 ~ 16594186 (-)
sema4ba sema4b,LOC103368553,LOC100693140,LOC101470126 coding downstream 105914 16462555 ~ 16549024 (-)
LOC120563779 NA coding downstream 122497 16529442 ~ 16532441 (-)
zgc:162879 LOC104964034,LOC103368560,LOC100692867 coding downstream 193706 16452033 ~ 16461232 (-)
malt3 LOC104964024,LOC103357518,LOC102077990 coding upstream 111175 16766929 ~ 16776366 (-)
slc28a1 slc28a1,LOC108230093,LOC106514348 coding upstream 136400 16792154 ~ 16803322 (-)
si:dkey-24l11.2 LOC104946603 coding upstream 164560 16820314 ~ 16830164 (-)
pstpip1a pstpip1,LOC102789492 coding upstream 179578 16835332 ~ 16842414 (-)
rcn2 rcn2,LOC102789787 coding upstream 185355 16841109 ~ 16846133 (-)
G85353 NA non-coding downstream 27989 16626731 ~ 16626949 (-)
G85332 NA non-coding downstream 100127 16554036 ~ 16554811 (-)
G85331 NA non-coding downstream 101305 16553406 ~ 16553633 (-)
G85328 NA non-coding downstream 126089 16528607 ~ 16528849 (-)
G85319 NA non-coding downstream 192420 16461562 ~ 16462518 (-)
G85373 ctsh non-coding upstream 24397 16680151 ~ 16682888 (-)
G85428 NA non-coding upstream 128544 16784298 ~ 16787982 (-)
G85436 NA non-coding upstream 153528 16809282 ~ 16809502 (-)
G85441 NA non-coding upstream 155320 16811074 ~ 16816147 (-)
G85453 scaper,LOC102788151,LOC107662441,LOC107688925 non-coding upstream 211373 16867127 ~ 16869163 (-)
G85321 NA other downstream 213973 16439374 ~ 16440965 (-)
st8sia2 fam174b,st8sia2,LOC100690985,LOC101474125,LOC102798331 other downstream 445752 16188853 ~ 16209186 (-)
chd2 chd2 other downstream 467602 16155984 ~ 16187336 (-)
G85133 mef2a,mef2aa,LOC107553916 other downstream 1110856 15514778 ~ 15544082 (-)
ttc23 LOC104957250 other downstream 1170793 15472934 ~ 15484145 (-)
LOC120563869 frmd5,LOC104917831,LOC102299895,LOC106561170 other upstream 41341 16697095 ~ 16763718 (-)
trnah-gug_10 NA other upstream 108961 16764715 ~ 16764786 (-)
G85435 NA other upstream 152302 16808056 ~ 16808416 (-)
fbxl22 fbxl22 other upstream 970257 17626011 ~ 17645520 (-)
ppcdc ppcdc other upstream 1205959 17861713 ~ 17877065 (-)

Expression


Co-expression Network