G85460 (scaper)


Basic Information

Item Value
gene id G85460
gene name scaper
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 16897684 ~ 16899795 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU115097
gtgtgtttctgtttgtcagAGGAAGATCAAGAGATCACAGAGAAGTTTAAGATGTGTAAGCGAGAAAGAGACATGCTCACCGTCCGGTTACGACAAAACACAGCTTACACATGCTGTGCAGCAGAGCTGAGGCTTGCTGGAGGAAAGCGGACATCTTTGGGTGCTCGTCTACAGGACCTTGGATCGACAAGAAGCACCCGTACAGCTTGTCAATCAAACCCATGTTTACTACATAGCTCATCAAGTCTTGTGTGCGACTGTTGAAGGACTCTGTGGCAGAGCTCTTGACCTTGGCATCTGGGGAGGAAATCCACGTGTTTTCGACTTGTCCAGACTCAGAGATATGCGGCCACAGGGACTTCAGGATGGTAGCAATGGTCTGCAGCAGGCCTGTTGTCAAACCCTCAAAGACTTGTTTGTTCACACTGCGCCCAAAAATAGATTTGTCCTCAT

Function

symbol description
scaper Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human SCAPER (S-phase cyclin A associated protein in the ER).

NR:

description
PREDICTED: S phase cyclin A-associated protein in the endoplasmic reticulum isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115097 True 453 lncRNA 0.49 2 16897684 16899795

Neighbor

gene id symbol gene type direction distance location
rcn2 rcn2,LOC102789787 coding downstream 51551 16841109 ~ 16846133 (-)
pstpip1a pstpip1,LOC102789492 coding downstream 55270 16835332 ~ 16842414 (-)
si:dkey-24l11.2 LOC104946603 coding downstream 67520 16820314 ~ 16830164 (-)
slc28a1 slc28a1,LOC108230093,LOC106514348 coding downstream 94362 16792154 ~ 16803322 (-)
malt3 LOC104964024,LOC103357518,LOC102077990 coding downstream 121318 16766929 ~ 16776366 (-)
isl2a isl2,LOC102787860,LOC102305078,LOC101486127,LOC102207021 coding upstream 13742 16913537 ~ 16918273 (-)
tmem266 tmem266 coding upstream 28946 16928741 ~ 16958417 (-)
lactb lactb coding upstream 63682 16963477 ~ 16967097 (-)
tpm1 tpm1,LOC103141214,LOC106946143 coding upstream 68798 16968593 ~ 16981538 (-)
tln2b tln2 coding upstream 94128 16993923 ~ 17075416 (-)
G85453 scaper,LOC102788151,LOC107662441,LOC107688925 non-coding downstream 28521 16867127 ~ 16869163 (-)
G85441 NA non-coding downstream 81537 16811074 ~ 16816147 (-)
G85436 NA non-coding downstream 88182 16809282 ~ 16809502 (-)
G85428 NA non-coding downstream 109702 16784298 ~ 16787982 (-)
G85373 ctsh non-coding downstream 214796 16680151 ~ 16682888 (-)
G85462 scaper,LOC102788151 non-coding upstream 1369 16901164 ~ 16902321 (-)
G85481 etfa non-coding upstream 20654 16920449 ~ 16922142 (-)
LOC120563415 NA non-coding upstream 190310 17090105 ~ 17095763 (-)
G85601 LOC101478969,LOC102214964,LOC102308915,LOC100701437,LOC102780768 non-coding upstream 616108 17515903 ~ 17517167 (-)
G85613 acsbg1,LOC102779547 non-coding upstream 644360 17544155 ~ 17544405 (-)
G85435 NA other downstream 89268 16808056 ~ 16808416 (-)
trnah-gug_10 NA other downstream 132898 16764715 ~ 16764786 (-)
LOC120563869 frmd5,LOC104917831,LOC102299895,LOC106561170 other downstream 133966 16697095 ~ 16763718 (-)
G85321 NA other downstream 456719 16439374 ~ 16440965 (-)
st8sia2 fam174b,st8sia2,LOC100690985,LOC101474125,LOC102798331 other downstream 688498 16188853 ~ 16209186 (-)
fbxl22 fbxl22 other upstream 726216 17626011 ~ 17645520 (-)
ppcdc ppcdc other upstream 961918 17861713 ~ 17877065 (-)
dennd4a dennd4a other upstream 994058 17893853 ~ 17956629 (-)
trnaq-cug_6 NA other upstream 1027252 17927047 ~ 17927118 (-)
G85813 rpl4 other upstream 1131213 18031008 ~ 18036276 (-)

Expression


Co-expression Network