G85601 (LOC101478969,LOC102214964,LOC102308915,LOC100701437,LOC102780768)


Basic Information

Item Value
gene id G85601
gene name LOC101478969,LOC102214964,LOC102308915,LOC100701437,LOC102780768
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 17515903 ~ 17517167 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU115304
TGTTGATCTTCTGCAGGGAGATGTGCTTCTCCAGCAGCCGGCGGAGTTTGACCTCAGAGCCGTACTTCCCACAGGTGCCGTTGTCAGTCAGGATGAAGTGGGAGTGGCTGTTGTTGAGCACAGCCAGCTTGCTCAGAGGGTTTGCCATCGTCTGATAGGGTTTGTTTacATCTTTTCCAATGAGATCCTCTTTGTTTTCCAGGATTCCCCATGGAGCAATTCCAATAGCGCACACCTTCCCTCGTGACTTGGAGGAATGGTCCTTTAAGGCGTCTCCCACATGACGGATCACCCCGGTGTTGACTCCGCCCGTGAAGATCCAAGCTCCGGTGGTGACGGCAGCTTTGATCAGGCCTTTGCCAAACACTTGCTTGAGTTTGGGTTGGAGGTCGAAGTTCTGGAGACCTCCGTGTACGGAGATGAGCAAGGTGGGCAGCTCCAACTGCCAATCCTTCACCATCAAATGCAGTAAGTTGTCAGGTTTGGTGTCATAGGAGACTCGGATATACATGGCCTTGTTGACGAATCCTCCACCCTGGAACTCGATCAAGCCAAAGGCGTCTGTTGGGTAGGTCCTGGTGTGCTTGATCACACTCCATTTATCTTTTGGGGTATCAATCTGCACCAGCTGGTTCGCTTCCTCTAGTGAGTTGGCACCAGCAGGGATGGCCACGTGCTGCGATGTCAGCTGACCACAGGCACATCTACATGGATCACAGAACAAACATCACTGAGTTACCATGCCAGTCCTGG
>TU115305
TGTTGATCTTCTGCAGGGAGATGTGCTTCTCCAGCAGCCGGCGGAGTTTGACCTCAGAGCCGTACTTCCCACAGGTGCCGTTGTCAGTCAGGATGAAGTGGGAGTGGCTGTTGTTGAGCACAGCCAGCTTGCTCAGAGGGTTTGCCATCGTCTGATAGGGTTTGTTTacATCTTTTCCAATGAGATCCTCTTTGTTTTCCAGGATTCCCCATGGAGCAATTCCAATAGCGCACACCTTCCCTCGTGACTTGGAGGAATGGTCCTTTAAGGCGTCTCCCACATGACGGATCACCCCGGTGTTGACTCCGCCCGTGAAGATCCAAGCTCCGGTGGTGACGGCAGCTTTGATCAGGCCTTTGCCAAACACTTGCTTGAGTTTGGGTTGGAGGTCGAAGTTCTGGAGACCTCCGTGTACGGAGATGAGCAAGGTGGGCAGCTCCAACTGCCAATCCTTCACCATCAAATGCAGTAAGTTGTCAGGTTTGGTGTCATAGGAGACTCGGATATACTTGGAAAGAAAAGAAGGGAAGAGAAC

Function

NR:

description
transient receptor potential cation channel subfamily M member 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115304 True 753 lncRNA 0.53 4 17515903 17517167
TU115305 False 535 lncRNA 0.52 3 17516218 17517167

Neighbor

gene id symbol gene type direction distance location
klf13 klf13,znf746 coding downstream 28329 17475744 ~ 17487574 (-)
LOC120563560 LOC102312947,LOC102081637 coding downstream 91572 17407989 ~ 17424331 (-)
gcnt3 NA coding downstream 108000 17406196 ~ 17407903 (-)
foxb1a foxb1,LOC103353681,LOC101061572 coding downstream 150142 17362238 ~ 17365761 (-)
tln2b tln2 coding downstream 440487 16993923 ~ 17075416 (-)
LOC120564505 rab8b,LOC103379973 coding upstream 10616 17527783 ~ 17530628 (-)
dnaja dnaja4,LOC108229883,LOC107099226,LOC106514380 coding upstream 17137 17534304 ~ 17537846 (-)
idh3a idh3a,LOC103353692,LOC100691871 coding upstream 28178 17545345 ~ 17550219 (-)
lrrc61 lrrc61 coding upstream 34166 17551333 ~ 17554942 (-)
LOC120563723 NA coding upstream 49074 17566241 ~ 17572209 (-)
LOC120563415 NA non-coding downstream 420140 17090105 ~ 17095763 (-)
G85481 etfa non-coding downstream 593761 16920449 ~ 16922142 (-)
G85462 scaper,LOC102788151 non-coding downstream 613582 16901164 ~ 16902321 (-)
G85460 scaper non-coding downstream 616108 16897684 ~ 16899795 (-)
G85453 scaper,LOC102788151,LOC107662441,LOC107688925 non-coding downstream 646740 16867127 ~ 16869163 (-)
G85613 acsbg1,LOC102779547 non-coding upstream 26988 17544155 ~ 17544405 (-)
G85660 NA non-coding upstream 139978 17657145 ~ 17657371 (-)
G85711 NA non-coding upstream 224525 17741692 ~ 17742006 (-)
G85799 NA non-coding upstream 312341 17829508 ~ 17834884 (-)
G85802 arih1,LOC107662282,LOC107591299 non-coding upstream 324933 17842100 ~ 17845786 (-)
G85435 NA other downstream 707487 16808056 ~ 16808416 (-)
trnah-gug_10 NA other downstream 751117 16764715 ~ 16764786 (-)
LOC120563869 frmd5,LOC104917831,LOC102299895,LOC106561170 other downstream 752185 16697095 ~ 16763718 (-)
G85321 NA other downstream 1074938 16439374 ~ 16440965 (-)
st8sia2 fam174b,st8sia2,LOC100690985,LOC101474125,LOC102798331 other downstream 1306717 16188853 ~ 16209186 (-)
fbxl22 fbxl22 other upstream 108844 17626011 ~ 17645520 (-)
ppcdc ppcdc other upstream 344546 17861713 ~ 17877065 (-)
dennd4a dennd4a other upstream 376686 17893853 ~ 17956629 (-)
trnaq-cug_6 NA other upstream 409880 17927047 ~ 17927118 (-)
G85813 rpl4 other upstream 513841 18031008 ~ 18036276 (-)

Expression


Co-expression Network