ppcdc (ppcdc)



Basic Information


Item Value
gene id ppcdc
gene name ppcdc
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 17861713 ~ 17877065 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>TU115552
ctagttggatgtgatctgactgatgtatgctgggatcaggagtagttggatgtgatctgactgatgtatgctgggatcaggagtaggtggacgtgatctgactgatgcatgctgggatcaggagtagttggatgtgatctgactgatgtatgctgggatcaggagtagttggatgtgacctgactggcccagatgagggagaggagcagttctgtatgctttcttgatgttagagtatacatgatctagtgtgttcttccctctagtagcagaatctacatgctggaaaaagctggggagtacagactttaaggatgCCTTGTTTAAGTCCCTTGCTACAATATGCATCCCCACCAGGTAAAGGGGCCATGGCAGAGGTATCGACTATTGTCAGTGCTGTCAAACAGTATCTCCAGAAACCAGATGAGTCATGATGAAAACATGCACATAACATTGTATTGTACATTCAACtggaacaaaaaataaatagtaaggatgatgtgatgatgat
>XM_039809890.1
AAATAGTTAAGCGGAGAGTGGTTTACAGGAGCGACCGGAGCGACCGGGAGCGACACGGCAGTTTGTCGACCTCTTCTTGGTGATATGCTAATATGCAGACAGATGACTATGTTTCCGGTCTAAAAACTGATTTGCTGAAATCTTCCGGGACATTTCGTGTTCTTGTTGGCGTGACGGGAAGTGTTGCAGCCTTGAAACTGCCTCTTTTGGTATTCCAGCTTCTTCAGCTCCCTGGGGTGGATGTAAGAGTCGTCACCACAGAGCATGCCAAGCACTTCTACAATCCTGCAGAGGTTTCAGTAAAAATCTACAGTGACAAGGATGAGTGGGAGCTGTGGACTCAGAGATCTGACCCTGTGTTGCACATTGAGCTAAGGCGCTGGGCAGACTTACTTGTCATTGCCCCCCTTGATGCCAACACTCTTGGAAAGATTGCTAATGGAATTTGTGACAATCTCTTGACATGTGTGGTAAGAGCCTGGGATACCAGTCGCCCTCTGCTCTTCTGCCCTGCAATGAATACAGCTATGTGGCAACATCCCATTACAGCCCAGCAGGTATCCTGTCTCACAGAGTTTGGATATATGGAAATCCCCTGCGTTGCTAAGAAGCTAGTATGTGGAGATGAAGGTAAAGGGGCCATGGCAGAGGTATCGACTATTGTCAGTGCTGTCAAACAGTATCTCCAGAAACCAGATGAGTCATGATGAAAACATGCACATAACATTGTATTGTACATTCAACtggaacaaaaaataaatagtaaggatgatgtgatgatgattcAAAA

Function


symbol description
ppcdc Predicted to enable FMN binding activity and phosphopantothenoylcysteine decarboxylase activity. Predicted to be involved in coenzyme A biosynthetic process. Predicted to be part of phosphopantothenoylcysteine decarboxylase complex. Orthologous to human PPCDC (phosphopantothenoylcysteine decarboxylase).

NR:

description
phosphopantothenoylcysteine decarboxylase

GO: NA

KEGG:

id description
K01598 PPCDC, coaC; phosphopantothenoylcysteine decarboxylase

RNA


RNA id representative length rna type GC content exon number start site end site
TU115552 False 511 lncRNA 0.44 2 17861719 17865426
XM_039809890.1 True 790 mRNA 0.46 5 17861713 17877065

Neighbor


gene id symbol gene type direction distance location
c8h15orf39 NA coding downstream 4985 17846230 ~ 17856728 (-)
hexa hexa,LOC102299697,LOC102797931 coding downstream 42778 17811551 ~ 17818935 (-)
nr2e3 nr2e3 coding downstream 57886 17800703 ~ 17803827 (-)
stoml1 stoml1 coding downstream 62326 17796035 ~ 17799387 (-)
LOC120563763 LOC100692956,LOC102798821 coding downstream 65806 17792647 ~ 17795907 (-)
ints14 vwa9,LOC102797047 coding upstream 4343 17881408 ~ 17886727 (-)
megf11 megf11,LOC103353722,LOC102795465 coding upstream 55140 17932205 ~ 18006530 (-)
LOC120563782 rpl4 coding upstream 153883 18030948 ~ 18032194 (-)
LOC120564816 NA coding upstream 154124 18031189 ~ 18031256 (-)
LOC120564814 NA coding upstream 154403 18031468 ~ 18031539 (-)
G85802 arih1,LOC107662282,LOC107591299 non-coding downstream 15927 17842100 ~ 17845786 (-)
G85799 NA non-coding downstream 26829 17829508 ~ 17834884 (-)
G85711 NA non-coding downstream 119707 17741692 ~ 17742006 (-)
G85660 NA non-coding downstream 204342 17657145 ~ 17657371 (-)
G85613 acsbg1,LOC102779547 non-coding downstream 317308 17544155 ~ 17544405 (-)
G85806 NA non-coding upstream 11802 17888867 ~ 17892467 (-)
G85815 NA non-coding upstream 139042 18016107 ~ 18016774 (-)
G85910 LOC103141279,LOC103380252,LOC107097849,LOC106536919,LOC102790651 non-coding upstream 466477 18343542 ~ 18344341 (-)
LOC120564122 NA non-coding upstream 798198 18675263 ~ 18677985 (-)
G86064 NA non-coding upstream 879987 18757052 ~ 18761076 (-)
fbxl22 fbxl22 other downstream 216193 17626011 ~ 17645520 (-)
G85435 NA other downstream 1053297 16808056 ~ 16808416 (-)
trnah-gug_10 NA other downstream 1096927 16764715 ~ 16764786 (-)
LOC120563869 frmd5,LOC104917831,LOC102299895,LOC106561170 other downstream 1097995 16697095 ~ 16763718 (-)
G85321 NA other downstream 1420748 16439374 ~ 16440965 (-)
dennd4a dennd4a other upstream 16788 17893853 ~ 17956629 (-)
trnaq-cug_6 NA other upstream 49982 17927047 ~ 17927118 (-)
G85813 rpl4 other upstream 153943 18031008 ~ 18036276 (-)
lctlb lctl,LOC104967861,LOC107388717,LOC106956364 other upstream 164563 18041628 ~ 18047840 (-)
tmem258 NA other upstream 622254 18499319 ~ 18502866 (-)

Expression



Co-expression Network