G86529 (sqrdl)


Basic Information

Item Value
gene id G86529
gene name sqrdl
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 19601481 ~ 19603243 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU116606
TGACAAATAACTACTtcaataattacaatttggcctATCTAAACAAAATCGACAATTACCAGCCAAACGCCTTaaagaccttagctaatgttagcaactaattgcggttaaacaaagaaaatgcgTTTATGTAAAAGAATTGACTGCCTAgatggattgattgattgacattgCCAACCCTACAGCCGCGTATGTAGCACTGGCGTAGACAGAGCTAGTCTAGAAGGGATAAGATGTACGGCTAAAAATACCATCCTCCACGATGAAAAAAGCATTTAGCATGAAATAACTTGCATGAATAAACTAAATGTATGATGAGCATGATTAGGCTAAATCCTTAACTGCAGTCTGATTGCAGTTGTGCAGACGGTGATAAGTGCTAAGTGCTAAGTACAGATTTAGAACCCTCCAAGTTGCCAGGAACTTCCCATCATTTAATCCACAGTTAACAAGACAGGAACTGGCATAAACAGGAAATTCAACTTAGCTCGGCACAGAGGGTTAAACTTTTTCACCATCTGTTTGTGTCacgtgcaaaacatttctttgTCAAATCTAATGGTACACAAAGGTAAACTGAGATAATGATACAATCGTCAAACACTAATGTGAAGTGTCCCTACATTAAAGTTTCATAAGGCGTGGTGTATGCTTTTAGTCTTGTGCAATAGGTAATTGTGAAATACACTTACAGTTCTGAGGAAAGTACCTCTCAAATTACAAGAACCACAAGCAGTTAACAAGagatataaatgtataaatcgTATGCAGCAATAAAGTGCATTCCAGTGTTGGGTTGATGCAATGTTCAAACTGACACAATAATCACTTACCGACAGCAGCACCCGTTTTGGCTGTGGGCAGGTTGGTACAGTCTCCTATCCCAAACACATTGGGATACCTCTTATGTTGTAGGTGGTCTTTGTTGATATCCAACCAGCCAGCCTCATCTGCCAGCGGACTGCCTTTAATCACCAAATTGGGTCCCATTGGTGGTGTGACATGAAGCATTTCATACTCAAACACTTTGGTTTCGCCTGGTTTGTCAAGATTTTCAAATACAGCTTCTTTCTTGTCTGCCCGCACTTCAATCAGGTTTTGCCTAAGGTTCACTTGTAGGTCACGCTGTTTCACAATGTCCCACAATGAGTCAGCATATTTCTTGATCCCAAAAAGCACAGGTAGGGATGTGTTGTATATTATATTGGCCTTATCCCTTTTTCCTGTTTTTCTGAGAAAGGCATCTGTTAGATACATGATCTTCTGTGGAGCTCCAGCACATTTCACAGGAGTATTTGGGAAAGTGAACACAGCATTGCCCTCTTTGAAGTCCTGCAGTGCTTTCCATGTTTTCTCCACAGTTTGGACTGAGTAGTTTGACCCAATCTTTGGATGTTCAAATCCTTCTGGCAGTCCTTTGATCTA

Function

NR:

description
PREDICTED: sulfide:quinone oxidoreductase, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116606 True 1425 lncRNA 0.40 3 19601481 19603243

Neighbor

gene id symbol gene type direction distance location
atp8b4 atp8b4 coding downstream 3119 19581787 ~ 19598362 (-)
LOC120564200 NA coding downstream 44302 19549062 ~ 19557179 (-)
zgc:101540 LOC100694233,LOC102305394,LOC102779799,LOC101472508,LOC102208223 coding downstream 54298 19537502 ~ 19547183 (-)
duox2 duoxa2 coding downstream 164825 19434249 ~ 19436656 (-)
fan1 fan1 coding downstream 178259 19417626 ~ 19423222 (-)
parp16 parp16 coding upstream 20422 19623665 ~ 19629890 (-)
trnap-agg_7 NA coding upstream 79603 19682846 ~ 19682917 (-)
LOC120563845 LOC103375932,LOC108230170,LOC106526839 coding upstream 96911 19700154 ~ 19707127 (-)
LOC120563329 NA coding upstream 150161 19753404 ~ 19761910 (-)
nat10 nat10 coding upstream 185468 19788711 ~ 19798138 (-)
G86519 NA non-coding downstream 52520 19548160 ~ 19548961 (-)
G86432 NA non-coding downstream 69859 19530576 ~ 19531622 (-)
G86430 NA non-coding downstream 74344 19525687 ~ 19527137 (-)
G86400 LOC101161482 non-coding downstream 217474 19383619 ~ 19384007 (-)
G86395 NA non-coding downstream 226542 19371007 ~ 19374939 (-)
G86517 NA non-coding upstream 6162 19609405 ~ 19618046 (-)
G86540 LOC103375930 non-coding upstream 71680 19674923 ~ 19679089 (-)
G86543 LOC104950121,LOC106908881,LOC103380454 non-coding upstream 91752 19694995 ~ 19695815 (-)
G86549 NA non-coding upstream 120730 19723973 ~ 19725193 (-)
G86566 NA non-coding upstream 171064 19774307 ~ 19777043 (-)
cep152 cep152,LOC104960117 other downstream 27793 19557452 ~ 19573688 (-)
G86402 LOC103363837 other downstream 212906 19387822 ~ 19388575 (-)
arpp19b arpp19,LOC100693429,LOC102791975,LOC106919339,LOC101065895 other downstream 284003 19315385 ~ 19317478 (-)
LOC120564082 svip other downstream 440994 19156758 ~ 19160487 (-)
G86194 tph1 other downstream 590565 19007196 ~ 19010916 (-)
G86638 NA other upstream 649396 20252639 ~ 20259259 (-)
LOC120564033 LOC103358331,LOC102195670 other upstream 1203639 20806882 ~ 20829235 (-)
LOC120563850 NA other upstream 1274425 20877668 ~ 20887626 (-)
dnajb9a dnajb9,LOC100706374,LOC102775779,LOC102215328 other upstream 1766288 21369531 ~ 21372509 (-)
G87140 NA other upstream 2109799 21713042 ~ 21713554 (-)

Expression


Co-expression Network