G86660


Basic Information

Item Value
gene id G86660
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 20250890 ~ 20264206 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU116787
cctgcTGAGTACTGTGTATTTGTTTCCCCATCCTTGGTAGGAATCAATGGGAATGGGCTCGGGGTCTCTCTGACAGTGAAGGGAAGTCGGAAAGTATTGAGAGTtgagatttgttgacaataagaaaaagacaaaaacatggcaggCTTATCTTTTAAGAGTGAAAAAGAGCAGCTGAAGCAATGGGTACAGTATGAGGTTTGGACAGTTCTTTATTTTCCCTTTTATAAGGCTGCTGGGTCTCCCCATAGtggatatacatatatatacaggaGATTGCTATACTGGAGTTACACTGAGGGCAGATGGTCCATATTACACAGACTTCAAAAAACAACACTAATAGAGCCTCACCTCCAGGTATCAGaaatcagcagagagaaagagaggggatagGAAGGGGGGGAAACAGCACATGAGAactagaaagagaaagaagaggggAGATGATGCAGTCTGAGAGCCTGACTCAACTGCCTAATAACTTAACACTGGAAAATAACATACAGATTTCACGCACAGTGCATCTTAAATAGCTTACGTGAAGAACCATTTACCATAAATATCTGTATTTTCGGGAaccaacatatataaaaaaatgatttaaaaaaacaacaaaaatcaatGTTCAGTCTttaattttttcttattttctccttttctcgTCGTGCAAATCGTTCTTTCGTTCCTTCTTCCTGTGGAGGCCGGCCTTTTTTTCCACCCTGCCCACATCCATTCCAGATAAACGAGGAAAAGGAAACAGAACACCACAGTCAACTCATCACAAAAAgaaaccacagacacacagaacagCAAGAACACAGtactcttattttttttctttttttttttctttctttctttcttttttgagcTTCTTCATCACCGTTATTCCTCTTCATGGTCAGTGTCATCGTTGTGGTCTTTCTCCTGGCGTACTGGTTGGCGGCAGTGGAGTGGTCCTCCCCCCGACGGCTCAGTGGAACTGGGAGGCAACTCTCCAATCGGCTGGTCAGTTCAGCAGTGATATATTATGTCTcaatttcacagtgtggtagGACAAGGAGGATGAGGATAGGGAAGGGGAGTGACATGGAGCTAAGCCAGAGGAAGGGTTAAGGAAGGTGGGAACAGGAATCAGAGGAACCACAGCAAAAATTAGAAAAACAACTAGAAACCCAGACCGtccatgaaaaaaaagaaacaaaatggccATTTCACTCTCTTCTGAGTTTCATTCCCGCCAACCCATGTGGTTGGGAAGGCCATGATTGGCTGGTGTAAGCTGATTGGATGGCCTGTGTTTGTGGCAGAGGGTAGGGAGAGATGGGTAAGGGAACTAAGGCTGACTGGAATCCGCTGGTGGATGGGACTCGACAGGGCAATATGTCATCAAGGATGGGCGTTGCAGGTCAATGTGTGATTGGCAGGTCAGAGGGCGAATCCCTTCTTGGTGGGTTCAGGCACGCTGCTGCAGTGCCCGCCTCTTGCGGCTGTAGTAGTGACGCGCGCCGGTCTGTCTGGCAAAGTTCATCATGTAGTTTTGTTTACGAGTGCTGCAGG
>TU116788
tctttttttaaaaaaccacagacacacagaacagCAAGAACACAGtactcttattttttttctttttttttttctttctttctttcttttttgagcTTCTTCATCACCGTTATTCCTCTTCATGGTCAGTGTCATCGTTGTGGTCTTTCTCCTGGCGTACTGGTTGGCGGCAGTGGAGTGGTCCTCCCCCCGACGGCTCAGTGGAACTGGGAGGCAACTCTCCAATCGGCTGGTCAGTTCAGCAGTGATATATTATGTCTcaatttcacagtgtggtagGACAAGGAGGATGAGGATAGGGAAGGGGAGTGACATGGAGCTAAGCCAGAGGAAGGGTTAAGGAAGGTGGGAACAGGAATCAGAGGAACCACAGCAAAAATTAGAAAAACAACTAGAAACCCAGACCGtccatgaaaaaaaagaaacaaaatggccATTTCACTCTCTTCTGAGTTTCATTCCCGCCAACCCATGTGGTTGGGAAGGCCATGATTGGCTGGTGTAAGCTGATTGGATGGCCTGTGTTTGTGGCAGAGGGTAGGGAGAGATGGGTAAGGGAACTAAGGCTGACTGGAATCCGCTGGTGGATGGGACTCGACAGGGCAATATGTCATCAAGGATGGGCGTTGCAGGTCAATGTGTGATTGGCAGGTCAGAGGGCGAATCCCTTCTTGGTGGGTTCAGGCACGCTGCTGCAGTGCCCGCCTCTTGCGGCTGTAGTAGTGACGCGCGCCGGTCTGTCTGGCAAAGTTCATCATGTAGTTTTGTTTACGAGTGCTGCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116787 True 1563 lncRNA 0.45 2 20250890 20252526
TU116788 False 784 lncRNA 0.49 2 20250890 20264206

Neighbor

gene id symbol gene type direction distance location
LOC120564471 LOC104960979,LOC103355225,LOC103150264,LOC103466396,LOC106915861 coding downstream 135506 20088128 ~ 20115384 (-)
si:dkey-29p10.4 NA coding downstream 167290 20075491 ~ 20083600 (-)
LOC120564329 tp53i11 coding downstream 191767 20016169 ~ 20059123 (-)
cd82b LOC103355222 coding downstream 238580 19987783 ~ 20012310 (-)
tspan18b tspan18 coding downstream 296075 19885911 ~ 19954815 (-)
LOC120563518 plcz1,LOC104942417,LOC106523397,LOC108229959 coding upstream 11671 20275877 ~ 20293118 (-)
LOC120564552 LOC103358309,LOC104963723 coding upstream 326096 20590302 ~ 20596104 (-)
LOC120564551 LOC104940623,LOC103358310,LOC104963698,LOC106523659 coding upstream 339818 20604024 ~ 20610068 (-)
hbp1 hbp1,LOC108230206 coding upstream 411230 20675436 ~ 20686687 (-)
hsp90b1 hsp90b1,LOC102789166 coding upstream 422859 20687065 ~ 20708195 (-)
G86652 reln non-coding downstream 9040 20241433 ~ 20241850 (-)
G86605 NA non-coding downstream 235078 20014338 ~ 20015812 (-)
G86575 lmo2 non-coding downstream 427517 19821540 ~ 19823373 (-)
G86566 NA non-coding downstream 473847 19774307 ~ 19777043 (-)
G86549 NA non-coding downstream 525697 19723973 ~ 19725193 (-)
G86686 NA non-coding upstream 138538 20402744 ~ 20461823 (-)
G86761 NA non-coding upstream 434609 20698815 ~ 20699637 (-)
G86853 NA non-coding upstream 644183 20908389 ~ 20908590 (-)
G86976 NA non-coding upstream 838424 21102630 ~ 21103379 (-)
LOC120563411 NA non-coding upstream 876301 21140507 ~ 21146513 (-)
cep152 cep152,LOC104960117 other downstream 677202 19557452 ~ 19573688 (-)
G86402 LOC103363837 other downstream 862315 19387822 ~ 19388575 (-)
arpp19b arpp19,LOC100693429,LOC102791975,LOC106919339,LOC101065895 other downstream 933412 19315385 ~ 19317478 (-)
LOC120564082 svip other downstream 1090403 19156758 ~ 19160487 (-)
G86194 tph1 other downstream 1239974 19007196 ~ 19010916 (-)
LOC120564033 LOC103358331,LOC102195670 other upstream 542676 20806882 ~ 20829235 (-)
LOC120563850 NA other upstream 613462 20877668 ~ 20887626 (-)
dnajb9a dnajb9,LOC100706374,LOC102775779,LOC102215328 other upstream 1105325 21369531 ~ 21372509 (-)
G87140 NA other upstream 1448836 21713042 ~ 21713554 (-)
LOC120564778 LOC103358851,LOC101480430,LOC100706913,LOC102797593 other upstream 1470800 21735006 ~ 21739344 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110532453 reln misc NC_048565.1 CM023219.2 55226539 ~ 55523230 (+)