G87030 (LOC103366871,LOC104946806,LOC106525492,LOC108230167)


Basic Information

Item Value
gene id G87030
gene name LOC103366871,LOC104946806,LOC106525492,LOC108230167
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 21245010 ~ 21251759 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU117244
AAAAATTTATTGAAGTTAATGTAAGATGAAATCATAAGTGAtataagaaaaaacaaaaacaaataacccTTGCATAGATCACAGACCATGCCTTTGTCATCATCTGACAAACTGAACACATTGTAGCATAATCCTTGGTAAACACAACATGACAATGAAGGCTAGATTAGATAAcacaatcagagtttggttTGCTTGTGGATGAAAACAAGAGCAGAATAATTCAAGTCCTTTTTGCGCTTTGCTCCAATGCTTCCCTACAAGCGATTAAGTGTGCATTCTTGACAGGAAAGACAAGCTCATAGCCGTCACACTTCTAACACAAACAAGATCTTCTCATCAATAATCACCTTTGGCGAGTGAGGTACACAACTTCCCAACATTTGATCCTGTTAAGTGCCTCATCAGCAAGCAGAAAGCAGTCCAACATCAACACCTTTAGCAAACAAGAATGCCTTAAAACCAATGTAGTACAGAGGAGGGTGTGTGGCACAGGCCCTGTTTAAACATGATGGGCACGTTTCCAAAAACACAGTATCACTACAGTCTAGACTGAGATAACAATGGGAAAAATGTCACTTGAAAAAGCGTTTCAGTCCTAGAATAGAGATAAAGTTTGAGAAACTAGCCCTTAATGCCTGACCTCACATTCAGAGCCTAGCGGAGCACAACCTGAAAATCACAAACACGCTGAGCACGGCTCGGATACCCAACGCTGTCTTAGTGATGAGGTCAGCGCTAAGGTGCTTTTTGAGAAATCCAGCAGAGGACACGTTTCACAACAACTTCTGAACAGGGCCTTACAGGAAGCCTTGGTGCAGATGAAAGCAagggtttctttttttaaatgatgcaaCTGTATTATAGTTGATCCATAGTTTGAAAGGCAAAACTCATGCAGTCTTCCATCGACCATGCAGTTTTTTGCGATTAGTAGGTTTCTGTAGAGATACATTGTAGCATTGTAGATTGGAAGAATGTGAACATGGTGTTTGAATGAATCCTGGTTTTTTTACCTAAAACCAAAAAGACAAACCACACTGggttttttcataatagtacacTTGTCCATATCAATTCATTTATAGCAATTGATCATAATACAGTATTTTCCTTATCATGGCTTGCCAGAGGAACATATTGTCTTTGAAATTTCAGTATATGGCATGTTCTACCTAAATCAGTCATGTTACAGTGCcaccaaaaaaaaggaaaataaaaacacattattaaaaaataatcatgCGTAATTGCAGTATATAGTGGTTACTTTTTCTCTCTTATTGTAGCTAAATTGCATTTTGTTCTCAtgacatttcatgttttttcttacagtttaattatgttaatgtcgtctttttttttttagatcttctcacttgtgtttgtttgcagaAGCATTAACATCTAACAGTAAGCTAAACAaattaatatgtaaaaaaaaaatgtaggcacCTTCTCTGGCTTTCTCTCACACAGCTGATCAGTCCAGTGAACTGACGATAGAGCCATAGATCCTTTCTAAGTGCATTATGTTATATATTATGGGCTGTTCCTTTGGGACTGTGTTATAGGTTCAGACTGAACCCTTCAGCATGCTATGATCCTGACTGCAAAATAACTCCAGTCTGACCTGGGTGGTAAATGGGGACTGCCACTATTGCAAAGCCTATATTTGGACTTTTCACAGGTTTCTTTCAATAAAATGTCAGCCTCTACATTTGACTCTACTGACCTTACAAAATCACAGAACAGAGGGTAAGAGATTGGTACATAAACAGCCCTGTTGCGAGTTATCTGTCAAGTGATCGCAGTTTCTCTGACATTCAAAATAGatttattttcctattttttacaaaaagcaTTTAAGAAACAGGTTATCTGTCTTTCTATTGCTGTTAAGAATGCATGTTTCTGTTGGGTTCTGTTGGGTAACTGAATGCATAGCACCGTCCAAACATGGCCTCGCAGCACTGCTAATGTGAGGAGTATTATTTCATATCATTTTCTTCACCTCACTTACAGCTGTGTCCTGCAGGACATGTTACACACACCACTACTTTCAAGCATCAGTCGTACAAGAAACTCATTAACAAAGCGAACAATTTCCTGATAGCTGCATTAATGAGACTACTAGAATTTCCTTGTATCTATATATAGCATTATAATATATGGTATTGGGTATTATTGATGTCCTTCTGTATGAGAAACCCTAATTGAAGATCCCTGACACAAATGTGTATCTTTTTTGCTCTCATGAGAAGTTACTGACATCTAGCAAGGCTCTTGAATTTTTACCTCGCCTGAGGCAGACACTCTTCAGTAGTACAGTACAAAGATCATCCAAATAAGATGACAGCTAGTGCCCtaaactaaccaaccagccacCTATAACAAAACAGTAACAAGAATTAGAGAATGAAAAAAGTCTTGTCCACAATAGCATGTGATGGTAACAAGACAACAATGGGACTCCTGTACTAGCACCACAAAGGATAGCCATTGCACCAACAGAAACAACTATATGACATTCAAGTAGCACTGCAGTGTAGCTTATTTTTTACAGGACTTTGTCAGGAGagtgctaaataaaaaaatttaaaaaaaagagcgtACCGTACATTACAAAATCTTACTATTATTTGGGTGATTTCATCTCAATACTGATTGTATTGATGTACAGTAGCTGGAGATTTTCAAGTAGTCATTACAATTTGTCCAATCTGCAGTTAGTCTGTCTGGAACAATATGCCAAGAAACATTACACTACGTATGATCAAgggtaaaaaagaagaaaaagaatctCACTATCAAAAAAATGTTTCAAGCAACAGAACAAAATGATTGTGCAAAAAAACAGGCTGCACTTTGCTGTGCATCATAATGCCCAAAGATATCAGGATGGCGGATTTAAAAACTATAACAAACGTTTACACCttatacacgtgtgtgtgtgtgtgtgtgttgaaacacATTCAAGCAGAACAGTAACTTTAGATACCATTGTTTCAAAGAAACCAACATATAAAACAGTCAATCTCATCCTGTTAGGAGAGTCAAGCAATCTCTACAAATGAATGTTCTGATTGTGCGTAGCTTTAAGTGAACAAAAGGAGCGGCGTTAGTGGTACACTATTTGTCCTAAGTGCTTGTGTAAAGGCTATACTTTGGGACTCTCACATTCAATGTTGCATGACTGCAGTTTACACTTAAGGTTCCATTTTGCATTATGGTATAGGAAGCCCTGCATTGAAGCTTGCAGCTCTGCAGCAAGTTTGCAATGACCTCACTGAGGTAGAGACCCTGAAAGGATGCATGgtgcacaaacaaaaacaatagaCATAAATACAATATGTTTAAAACCTATGGATATTCCCTTTTGAATTGGATTGGTAAACATGCAGAGTACAATACATTGCTGCTTAAGGGCATAATTAAGTGCATGACAGCATGAAAACTGGGTTGTGCATAACAGCCATGGAtcatcttttgtttgttttttgaccaCAATCACCTGCTGTTTTAACCTTGTTCATCTGTTCATCTTGttcatctggcatcattaacATCATGACCAACAGTGTATCAACACTAGAACACAAGGTAAACCATCTCTGCTCAACCTCACAAATCCCACTGTGCACAGAGGCACTTTCACTGGTCCTGTTGGTGAAAGGGATAAAGGCACTAGCAACTAATGTCTGAATAATTATCTGTAATATGAagtgaaatttggtattgatccTTTTTTTTACTGGATTCCAAACCAATATGTTCTCAAATGTGACATGGAAATGGAAGCATGACTAATGATATGTTAACTTTTCTTGTTAAAAGAAGGTCCATGCACTGCACTATTGATGTAATACTGTAATTGGTGCTTATTATAATTATATgcatttttgatatatttattTGGTATCTCTGACTACTTGCAAATTAGAAACTCTGCATCCTCGAGGTGGGTTTGGATATATTTGATCGCATTTTGGAAACATCCAGAATTTCATTTCCTTAGCTTCCCTGACAATAGGGCACTGCAGAGTGCCTGAATTGCAACAAGCTGAATACTCATGTCATGCATTAAATATACCAGGTTACAAAAGTACCTTAGTCGATGGACCATAATGCAGGTAACTTTTTTCATGCTAAGATCTCATTTATGTACTGTTCCCTTAAGATTGAACATTCAATTTCTATACTTCTAAATTATTagcatttcaaattaaaaactCATCCAGTGCACTCGTATGAAAACAGATGAGAAGAGGGGGATGGAGCCAGGTATCTGAAAGAACATCCTTTCCATTATGTGAGATATGTCTTGTGCATGCTGATATCAAAATGGAAAGTCTCTAATCATGCTCATGTGAAGCTCACTTTAACATTGTGCTGTGTTGCATCTAAAGGGCATGGCATTGAATCACTTGGTGATATCATAATTACAGCATCTGCTGGAAAACAGCAGCATTGCGGATGTCCGTGAAGCGAGTAGATCACCATCTGTTTACATCCAAACAAGAGAGATCAGTCTTCCTCCCATAAGGTGCTTTGCTCAATAGTAGATCTCATTTgtagggagagaggagagaggatagaggagagaggagcgaggAGGAGGGAGCAGGGGTCACCTAACATCTTGGTGCTTACCACTTGGCTGCAGGTGCTTGCATGTCTCTGCAGACTTTTCTGGTGCATTGTGCAACTTGCTGAAATGTTATCTGTACTCCATGCATAAGATTTTAATATCACACCGTCATCTGATAGGACAGTGTGTGCTCTGCGTCCTCCAGGGAGCCGTGTATATGCGTAATAgttgatgttttctttttgatgtACCTTTATATTTGTAGGATCAGAAGAATTAATTATTCTATCTACCTGTCATATACTCTAAGAGCTTAGATTTTTCTGTTTCCTTTCTATAAAGCTGAGCATAGTTGTAGGCCTAATGCCATAGAGCGCTTTGGGGAGGTAAATGAAACATTCCTAACTGATGGTCTACTCCACATATGACAGTCCCATTGAGATTCCAAAGTTACTAACTAGTGTTTAAACATCTGTAAGCAGCTTGCTTTTATTTACACAGTTTTGGTTGGCTATAGTGCAATTGCCAGTTCTGAGGTTTGCCTCCCTAAAGTTGTCGATGCTATTGTTTATGTCTCCATCAATCTCCATGTACTCTGACTTGCTGACGGTGGATGAACTACGGCGGCTGGAGTTGGTTTCAGAGGGGATGTTGGGATTGCTGACGTTGAGCAGCTGGGCCTGTTCTTCTCCTTCGGTCTCCCTGTGGTAGAAGTAGTTGAAGTTGGACACAATGACAGGCACAGGGAGCGCAATTGTCAACACTCCAGCGATGGCGCACAGAGATCCGACAATCTTGCCTCCTATACTGATGGGGACCATGTCCCCATAGCCCACAGTTGTCATAGACACAACAGCCCACCAAAATGCATCCGGGATGCTGCCAAAGCAGGATCCTTCCTCCTCTGCCTCAGCGAAGTAGACAGCGCTGGAGAACAAGATGACTCCAATGAACAGAAAGAAGATCAGCAATCCGAGCTCTCGCATGCTGGCCTTGAGAGTCTGCCCCAAAATCTGCAGTCCTTTGGAGTGTCGGGACAACTTGAAGATCCTAAACACCCTGACCAGACGAATCACCCTGAGTATGGCCAGAGATGTTGCCTGCTCCCCCACCCCCTCTTTTTCTGGGTCTTCAGCCAGCTCGGTGCCGAGTGTAATGAAGTAAGGGATGATAGCCACTATGTCGATCATGTTCATCATGTTCTTGAAGAAGGCCGGTTTGCTGGGGCACGCCAGAAAGCGCACAATCAACTCAAAGGAGAACCAGATTATACAGAGTGTCTCAATAAGGAAGAAGGGGTCAGTGAGGATATTTGGCTTATAATAAACAGTAGTGTTCCCAACTGCTATCATTCGACCCCTTGGGTCTTCTTTCAGCTGTGGTAAAGTCTCTAAACAAAATATGACTATTGAAATCAGGATTACCATCACAGACACTATGGCAATCCCTCTCGCAGGGCCTGAGCTTTCCGGGTGCTCGAAGAGAAGCCAAATCTGACGCTGGAACTCCTTCTCAGGTAAAGGACGCTCTTCCTCCCTGATGAAACCCTCGTCCTCACGAAACTTCTCCATCGCATCCACTCCCAGCTCGTAAAATTTGATTTCTTCTGAGAACATATCCAAAGGGACATTCACTGGTCTTCTCAGCCGACCGCCAGACTGATAGTAATAGAGGATGGCATCAAAGCTGGGCCGGTTTCTGTCGAAGAAGTACTCATTTCTCAGAGGGTCAAAGTACCGCATCCGCTTTTTCGGGTTGCCAAGCAACGTCTCTGGAAACTGGGAGAGAGTTTTCAACTGTGTCTCAAACCGAAGACCGGCTATGTTGATGACCACCCTCTCGCAGCATTCATGGTCATTGTGGTCTGGGGGGTAGGTGTCCTGAGGGTGGCCCGGGACAGCCGAGGTATCGTCCATGTTATCTCCTGCTACCACAGTCATTttgggaggaggtggagggggaTGAGTAGGAGGAGTTCAGGTTTGGGGCAAATTTTCCACTCCTCAGCTTCCCACACCCCTTAAATTGTTGGAGACGTCCCCAGATATGAGAGGGCTGGTTGGCTGCTTTGCCTTAGTGCGGCTCCACTGCGGTTCTCGCTGACTTGACCATTGCTGCTCTCCAGTgcatctgctgctgttgttactgctgccTCTGTc

Function

NR:

description
PREDICTED: potassium voltage-gated channel subfamily A member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117244 True 6750 lncRNA 0.41 1 21245010 21251759

Neighbor

gene id symbol gene type direction distance location
tmpob LOC103366874,LOC102305331 coding downstream 55403 21185466 ~ 21189607 (-)
LOC120564647 LOC103366875,LOC101162597,LOC101469130,LOC102779886,LOC103134408 coding downstream 61127 21175590 ~ 21183883 (-)
slc35b4 slc35b4,LOC102781124 coding downstream 79344 21160351 ~ 21165666 (-)
LOC120564432 LOC103371976 coding downstream 86506 21151500 ~ 21158504 (-)
LOC120564685 net1,LOC103371968,LOC102297003 coding downstream 110791 21120429 ~ 21134219 (-)
cnot4a cnot4,LOC102778264 coding upstream 12232 21263991 ~ 21276898 (-)
zgc:136858 LOC104946800 coding upstream 25700 21277459 ~ 21284740 (-)
LOC120563940 NA coding upstream 32614 21284373 ~ 21297599 (-)
dnm1l dnm1l coding upstream 103821 21355580 ~ 21368976 (-)
LOC120564741 LOC104962548,LOC102797891,LOC101479938,LOC102194218,LOC102291278 coding upstream 474327 21726086 ~ 21734094 (-)
LOC120563411 NA non-coding downstream 98497 21140507 ~ 21146513 (-)
G86976 NA non-coding downstream 141631 21102630 ~ 21103379 (-)
G86853 NA non-coding downstream 336420 20908389 ~ 20908590 (-)
G86761 NA non-coding downstream 545373 20698815 ~ 20699637 (-)
G86686 NA non-coding downstream 783187 20402744 ~ 20461823 (-)
G87107 nrcam,LOC101067328 non-coding upstream 210946 21462705 ~ 21466246 (-)
G87120 NA non-coding upstream 234773 21486532 ~ 21512528 (-)
G87123 cntn1 non-coding upstream 294899 21546658 ~ 21549859 (-)
G87148 NA non-coding upstream 473164 21724923 ~ 21725658 (-)
G87232 NA non-coding upstream 753740 22005499 ~ 22008395 (-)
LOC120563850 NA other downstream 357384 20877668 ~ 20887626 (-)
LOC120564033 LOC103358331,LOC102195670 other downstream 415775 20806882 ~ 20829235 (-)
G86638 NA other downstream 985751 20252639 ~ 20259259 (-)
cep152 cep152,LOC104960117 other downstream 1671322 19557452 ~ 19573688 (-)
G86402 LOC103363837 other downstream 1856435 19387822 ~ 19388575 (-)
dnajb9a dnajb9,LOC100706374,LOC102775779,LOC102215328 other upstream 117772 21369531 ~ 21372509 (-)
G87140 NA other upstream 461283 21713042 ~ 21713554 (-)
LOC120564778 LOC103358851,LOC101480430,LOC100706913,LOC102797593 other upstream 483247 21735006 ~ 21739344 (-)
LOC120564428 NA other upstream 1095411 22347170 ~ 22366978 (-)
parvg parvg other upstream 1437402 22689161 ~ 22706296 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G206491 LOC106561674 non-coding NC_048566.1 CM023220.2 94354478 ~ 94359358 (+)