LOC120564778 (LOC103358851,LOC101480430,LOC100706913,LOC102797593)


Basic Information

Item Value
gene id LOC120564778
gene name LOC103358851,LOC101480430,LOC100706913,LOC102797593
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 21735006 ~ 21739344 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU117418
TCACGTGACCGCCCTTCGACAGGAGTTTCCACGACAGCTGAGTAGCAGCTATATACGTTTTTCACCTGTAACATAGGTCCTTTTTAACTCCAGTGAGTCGAAGTTTCGTAAAATGGGAGACAAGAAAAGCCCTACAAGGTAACACATGTCGCTAGTTTCTATGAAAGAAGACTTTATCGGGCCGTTTGAGAACAGAAAGCTCGGTCAATGGATGGAGCTGTTTTACTGAAGTGTTCATGGCGGCTGGCTGCTGGTTTAATATGGGGCAACTGCCTGTGTGAGCTGAAAGCTCCCTTTTCCTCAAAGACTGACTTCTGAGCAGAAAAGAACTTTAGAGCAGTGTCTTTCCTGTTCTGGTAATCTTCACCTAACGGGGTTTCTTTGAAAGCATTGCGCTCATTTAAATTGTGGCGTTATCAcagtggttttgttttgtttttgtctgaagGCCAAAGCGGCAATCGAAGCCCTCCGCCGACGATGGGTACTGGGACTGTAGCGTCTGCACGTTCAGGAACACCGCTGAGGCGTTCAAGTGCACGATGTGTGATGTCAGGAAGGGGACGTCAACTCGaAAACCACGGCCGGTTTCTCAGCTGGTTGCACAGCAAGCAAATCAGCAGTTTGCACCACCCACACTCCccaaaaaggagaagaaagaaaaatcgGAGAAAGACAAGAGTGATAAAGAACTAAcactaaaaaagaaaagctaTAAAAAGATGAGGCCCAGGTTAAAAAACATAGaccggagcagcgcccagcatCTAGAGGTCACAGTTGGAGACTTGACTGtaataatcacagactttaaggaGAAAGCCAAACCCACGTCCACTTCAACAAGTGCTGCCTCAGCAGACCAACACAGCCAAAGTGGCTCAAGCTCTGATAACACTGAACGAGGGGTCTCCAGATGCTCTTCGCCCCGCGGGGAAGGCTCGCCGGTTAATGGAGAGACTCACTAACTTTCACACTCCCAGTCAGCACAACCCATTCTTCTGCACTCTCAACAGCCTTGACTAGAGATTAAACTTCAACATGCATTAATAATACTATACATGCCAATATGATAGCATTCACTTCCTTTGGGACTGTATTTTTCACTGCCTTCCCATAATGATAAAGAATTCAGGAGTCAGGACATATGCTGTATGCTCAACTCAAAGAACTGTTGCAGCAAGATCTGTCATGATGAACTGAAAAAGGAACCGTAGCATTAAATCCTGAATGTCAGTGGAAGTGTGCCACGTGTTGTGGTTACTTGTGTTTTAACACCTCAGTGTTACATCAGCATCACACTGAGCTGGTTTTTGCTGCACCGAATAAATGATACATTATGAAAGAAAATAGGAAGAAGTCATCTCAGAATTGTAGTTTATCTTTgaattttgttattatttgccCTTAATGGCATCCTATGTTCATAAAATCTTTTTAGCATTATTTCCACTTTGCCATTATCAGTAAACCATAACACTGTTGGTTAATAGCCTTATCCGGCTCTCATTTTATGCCATTGGATGCAATAATTTTTTAACTAACATTTTAAGAAACAATATTGAATAATTATTCTAAGTATGCTTCTCATTCACTTGGTAGAGTTGAGCATGATTT
>TU117419
TCACGTGACCGCCCTTCGACAGGAGTTTCCACGACAGCTGAGTAGCAGCTATATACGTTTTTCACCTGTAACATAGGTCCTTTTTAACTCCAGTGAGTCGAAGTTTCGTAAAATGGGAGACAAGAAAAGCCCTACAAGGTAACACATGTCGCTAGTTTCTATGAAAGAAGACTTTATCGGGCCGTTTGAGAACAGAAAGCTCGGTCAATGGATGGAGCTGTTTTACTGAAGTGTTCATGGCGGCTGGCTGCTGGTTTAATATGGGGCAACTGCCTGTGTGAGCTGAAAGCTCCCTTTTCCTCAAAGACTGACTTCTGAGCAGAAAAGAACTTTAGAGCAGTGTCTTTCCTGTTCTGGCCAAAGCGGCAATCGAAGCCCTCCGCCGACGATGGGTACTGGGACTGTAGCGTCTGCACGTTCAGGAACACCGCTGAGGCGTTCAAGTGCACGATGTGTGATGTCAGGAAGGGGACGTCAACTCGaAAACCACGGCCGGTTTCTCAGCTGGTTGCACAGCAAGCAAATCAGCAGTTTGCACCACCCACACTCCccaaaaaggagaagaaagaaaaatcgGAGAAAGACAAGAGTGATAAAGAACTAAcactaaaaaagaaaagctaTAAAAAGATGAGGCCCAGGTTAAAAAACATAGaccggagcagcgcccagcatCTAGAGGTCACAGTTGGAGACTTGACTGtaataatcacagactttaaggaGAAAGCCAAACCCACGTCCACTTCAACAAGTGCTGCCTCAGCAGACCAACACAGCCAAAGTGGCTCAAGCTCTGATAACACTGAACGAGGGGTCTCCAGATGCTCTTCGCCCCGCGGGGAAGGCTCGCCGGTTAATGGAGAGACTCACTAACTTTCACACTCCCAGTCAGCACAACCCATTCTTCTGCACTCTCAACAGCCTTGACTAGAGATTAAACTTCAACATGCATTAATAATACTATACATGCCAATATGATAGCATTCACTTCCTTTGGGACTGTATTTTTCACTGCCTTCCCATAATGATAAAGAATTCAGGAGTCAGGACATATGCTGTATGCTCAACTCAAAGAACTGTTGCAGCAAGATCTGTCATGATGAACTGAAAAAGGAACCGTAGCATTAAATCCTGAATGTCAGTGGAAGTGTGCCACGTGTTGTGGTTACTTGTGTTTTAACACCTCAGTGTTACATCAGCATCACACTGAGCTGGTTTTTGCTGCACCGAATAAATGATACATTATGAAAGAAAATAGGAAGAAGTCATCTCAGAATTGTAGTTTATCTTTgaattttgttattatttgccCTTAATGGCATCCTATGTTCATAAAATCTTTTTAGCATTATTTCCACTTTGCCATTATCAGTAAACCATAACACTGTTGGTTAATAGCCTTATCCGGCTCTCATTTTATGCCATTGGATGCAATAATTTTTTAACTAACATTTTAAGAAACAATATTGAATAATTATTCTAAGTATGCTTCTCATTCACTTGGTAGAGTTGAGCATGATTT
>XM_039810025.1
ATTGGGTGAACCCGTGTCACGTGACCGCCCTTCGACAGGAGTTTCCACGACAGCTGAGTAGCAGCTATATACGTTTTTCACCTGTAACATAGGTCCTTTTTAACTCCAGTGAGTCGAAGTTTCGTAAAATGGGAGACAAGAAAAGCCCTACAAGGCCAAAGCGGCAATCGAAGCCCTCCGCCGACGATGGGTACTGGGACTGTAGCGTCTGCACGTTCAGGAACACCGCTGAGGCGTTCAAGTGCACGATGTGTGATGTCAGGAAGGGGACGTCAACTCGaAAACCACGGCCGGTTTCTCAGCTGGTTGCACAGCAAGCAAATCAGCAGTTTGCACCACCCACACTCCccaaaaaggagaagaaagaaaaatcgGAGAAAGACAAGAGTGATAAAGAACTAAcactaaaaaagaaaagctaTAAAAAGATGAGGCCCAGGTTAAAAAACATAGaccggagcagcgcccagcatCTAGAGGTCACAGTTGGAGACTTGACTGtaataatcacagactttaaggaGAAAGCCAAACCCACGTCCACTTCAACAAGTGCTGCCTCAGCAGACCAACACAGCCAAAGTGGCTCAAGCTCTGATAACACTGAACGAGGGGTCTCCAGATGCTCTTCGCCCCGCGGGGAAGGCTCGCCGGTTAATGGAGAGACTCACTAACTTTCACACTCCCAGTCAGCACAACCCATTCTTCTGCACTCTCAACAGCCTTGACTAGAGATTAAACTTCAACATGCATTAATAATACTATACATGCCAATATGATAGCATTCACTTCCTTTGGGACTGTATTTTTCACTGCCTTCCCATAATGATAAAGAATTCAGGAGTCAGGACATATGCTGTATGCTCAACTCAAAGAACTGTTGCAGCAAGATCTGTCATGATGAACTGAAAAAGGAACCGTAGCATTAAATCCTGAATGTCAGTG

Function

NR:

description
PREDICTED: YY1-associated factor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117418 True 1617 TUCP 0.43 3 21735006 21739328
TU117419 False 1525 TUCP 0.43 4 21735006 21739328
XM_039810025.1 False 945 mRNA 0.47 4 21735384 21739344

Neighbor

gene id symbol gene type direction distance location
LOC120564741 LOC104962548,LOC102797891,LOC101479938,LOC102194218,LOC102291278 coding downstream 912 21726086 ~ 21734094 (-)
dnm1l dnm1l coding downstream 366030 21355580 ~ 21368976 (-)
LOC120563940 NA coding downstream 437407 21284373 ~ 21297599 (-)
zgc:136858 LOC104946800 coding downstream 450266 21277459 ~ 21284740 (-)
cnot4a cnot4,LOC102778264 coding downstream 458108 21263991 ~ 21276898 (-)
prickle1a prickle1,LOC104925408,LOC104962552 coding upstream 26338 21765682 ~ 21793881 (-)
LOC120563465 adamts20 coding upstream 135629 21874973 ~ 21961067 (-)
twf1a twf1,LOC102795415 coding upstream 274567 22013911 ~ 22029073 (-)
nell2a nell2 coding upstream 352189 22091533 ~ 22211840 (-)
LOC120564446 prl coding upstream 491587 22230931 ~ 22233599 (-)
G87148 NA non-coding downstream 9348 21724923 ~ 21725658 (-)
G87123 cntn1 non-coding downstream 185147 21546658 ~ 21549859 (-)
G87120 NA non-coding downstream 222478 21486532 ~ 21512528 (-)
G87107 nrcam,LOC101067328 non-coding downstream 268760 21462705 ~ 21466246 (-)
G87030 LOC103366871,LOC104946806,LOC106525492,LOC108230167 non-coding downstream 483247 21245010 ~ 21251759 (-)
G87232 NA non-coding upstream 266155 22005499 ~ 22008395 (-)
G87249 NA non-coding upstream 331614 22070958 ~ 22082538 (-)
G87254 NA non-coding upstream 366536 22105880 ~ 22106255 (-)
G87320 nuak1 non-coding upstream 548600 22287944 ~ 22355196 (-)
G87329 appl2 non-coding upstream 648651 22387995 ~ 22390216 (-)
G87140 NA other downstream 21452 21713042 ~ 21713554 (-)
dnajb9a dnajb9,LOC100706374,LOC102775779,LOC102215328 other downstream 362497 21369531 ~ 21372509 (-)
LOC120563850 NA other downstream 847380 20877668 ~ 20887626 (-)
LOC120564033 LOC103358331,LOC102195670 other downstream 905771 20806882 ~ 20829235 (-)
G86638 NA other downstream 1475747 20252639 ~ 20259259 (-)
LOC120564428 NA other upstream 607826 22347170 ~ 22366978 (-)
parvg parvg other upstream 949817 22689161 ~ 22706296 (-)
LOC120564579 LOC103366737 other upstream 1672166 23411510 ~ 23422457 (-)
G87538 NA other upstream 1754986 23494330 ~ 23498659 (-)
G87624 LOC103358853,LOC104921025 other upstream 1999638 23738982 ~ 23741190 (-)

Expression


Co-expression Network