LOC120564386


Basic Information

Item Value
gene id LOC120564386
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 25074082 ~ 25075467 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU118285
GTTGCACTTCCGGGTTGTGCTCACTGCTGTGATTTGTCTGTTCTGGCGTCAGATCGTCGGCTGGCAGGTCCATCCCCCCTCCTTGCCGAGGTAACGCAGTAATGCAAAGAGAGTAGCACTGATAGCTGTCTGTGCACGTTGCATGTTTCGAGCGTTTTCTCCTCTGGATCGACTCAAACGCTGCCTGAACGGTGACTTTCCTTCGGGATCCTTTAC
>XR_005640092.1
CGGAAGTACGTTGCACTTCCGGGTTGTGCTCACTGCTGTGATTTGTCTGTTCTGGCGTCAGATCGTCGGCTGGCAGGTCCATCCCCCCTCCTTGCCGAGGTAACGCAGTAATGCAAAGAGAGTAGCACTGATAGCTGTCTGTGCACGTTGCATGTTTCGAGCGTTTTCTCCTCTGGATCGACTCAAACGCTGCCTGAACGTGATCGGACTGAAGCTGCTGGAGAGTCTAGTTAGCCGGAGCATTTCAATCACCGGCTGCTGTTTGTTTTCACCTACACACGATTTTACTACAGACTACTATTTGAACTGTGGACTGTTTTGAGGCACACGATCCAAACATTCGCTGCCGCAGCTGAAGAGGCTTGCTGTGGGGCCACTGAGCAACTGTTGTTTGGCCACTGCTACGTGGGCCTGAGTTTTTAATGGGTTAGCCCTCCCTACATTAATGGAGTGAATTAAGttgtttatttctctttttgttatttttgttttcaactTAGTTAAAAGTTACGTGtgttagttttcttttttactattgagtttatttctttattagtaGTTTTTTtgagtttcttttgttttgtttcagttgTTTTGTTCTAATTATGATAATTATTATTGgtattgttttgatttgacaagtgtcttttgttgtttggaATTGATATCTTGTGTtaagtttcttttattttgctctttttatttgtttattttcaatATTGTTTTGACTCTAGGTTGGGGAGtgaaccccttttttttttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118285 False 216 lncRNA 0.54 3 25074082 25075458
XR_005640092.1 True 762 lncRNA 0.40 3 25074547 25075467

Neighbor

gene id symbol gene type direction distance location
LOC120564736 lrrc4c,LOC104932125,LOC100701892 coding downstream 179279 24765416 ~ 24894803 (-)
LOC120563810 NA coding downstream 685833 24383761 ~ 24388249 (-)
rag2 rag2,LOC102798233 coding downstream 853739 24161577 ~ 24220343 (-)
furinb furin,LOC103353086 coding downstream 946347 24044129 ~ 24127735 (-)
unc45a unc45a coding downstream 1057942 24008436 ~ 24016140 (-)
slc1a2b slc1a2 coding upstream 186774 25262241 ~ 25293957 (-)
pamr1 LOC103357277 coding upstream 227369 25302836 ~ 25387312 (-)
ascl1b LOC103357271,LOC100706722,LOC104920455,LOC101171241 coding upstream 540894 25616361 ~ 25617983 (-)
rassf7a rassf7 coding upstream 576285 25651752 ~ 25688678 (-)
lrrc56 LOC106573360 coding upstream 617268 25692735 ~ 25702672 (-)
LOC120563511 NA non-coding downstream 10115 25062325 ~ 25063967 (-)
G87790 NA non-coding downstream 168308 24905493 ~ 24905774 (-)
LOC120563413 NA non-coding downstream 392346 24676596 ~ 24681736 (-)
G87767 NA non-coding downstream 433357 24639857 ~ 24640725 (-)
G87765 NA non-coding downstream 434329 24639005 ~ 24639753 (-)
LOC120564398 NA non-coding upstream 36601 25112068 ~ 25114245 (-)
G87815 NA non-coding upstream 92609 25168076 ~ 25168327 (-)
LOC120564148 NA non-coding upstream 105862 25181329 ~ 25228205 (-)
G87865 NA non-coding upstream 141253 25216720 ~ 25217723 (-)
G87876 fjx1 non-coding upstream 275789 25351256 ~ 25354124 (-)
G87803 NA other downstream 8594 25064752 ~ 25065488 (-)
LOC120563922 NA other downstream 1157880 23909169 ~ 23916202 (-)
G87624 LOC103358853,LOC104921025 other downstream 1332892 23738982 ~ 23741190 (-)
G87538 NA other downstream 1575423 23494330 ~ 23498659 (-)
LOC120564579 LOC103366737 other downstream 1651625 23411510 ~ 23422457 (-)
G87897 NA other upstream 520886 25596353 ~ 25596761 (-)
phrf1 NA other upstream 555309 25630776 ~ 25647000 (-)
ptprjb.1 NA other upstream 1578169 26653636 ~ 26692244 (-)
G88249 mthfs other upstream 1937770 27013237 ~ 27014411 (-)
zgc:153031 LOC100703984,LOC102237950,LOC106523206,LOC105917737 other upstream 2148495 27223962 ~ 27229372 (-)

Expression


Co-expression Network