G88032


Basic Information

Item Value
gene id G88032
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 26229603 ~ 26231320 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU118573
GTGCCCCATAAGTTGATGTTTCTACAACTGAAATGGGTACTCAAAGTTAACAATTAACAAGGCCAGTTGGTTGGTAATATCATACCATTATACTCTCTCTGGCTCTTACCTGGTGGTCTCGGTGGCATCCCTGGTCTCGGTGGCATCCCTGGTCTCGGTGGCACGCCTGGTCTCTGTGGCACGCCTGGTCTCTGAGGGACTCCTGGTCGAGGAGGGACTCCTGGTCTGGGTCCACCAAAATTCTTGGATGAAATGGTCTCTGACACCACCGTGCACTTGGGTTTTCCAGGTCCTGATCCCATGCTGCCAGTTGGTCGTCCAGGTACTGGTCCTCCACTACCAGGCCGACCAGGTCCAATCCCTGGAGGCCGGGGTCCACCACCTCGAGGCTGACCCTGTAGGCCACTCCCACCAGGCCTGGCCTGTGGTACACCACCCGCTCTAGCTTGGAGCGTGCCTCCAGGTCTCGACTGAGGTTGGCTCCCGGCCTTAGGAGGGCCGCCCGATGACGGTCTCATCACCGAATTACCACTTGGTTTTAGAACAGAATTACTTCCAGGCCTTAGTTGTTCTCCCTTTCCCGACTTGTGGCCGCCGACTATAGGTCCCTGCTTCAATGAGCTACCCTGACTGGGCCTGGTCTGTTGGGAGCTACCATGCTGCGATCGTTGGCCTGTTGCAGCTGTTCCAGGAGCCCTGGTCCCAGGAACACCTGAGGCTCTTGATGAGCTTTCTTTTTTGAGGATAAGGTCACTTGCGGTGCTGGATTTGTGACTCGACGAGGGCTTAAGGCCCCCTTGTTTggctgaaacctgagaagacgCAGCTTTCGAAGGAACTTTACTGTTCATGGCACCAGATGAGCTAGACAAGCTTGTCCTGGATCTGTCTCTATCGCTGTGAGACATCTTgggtctctctctttctctgtcactaacagagaGCTTGGAAGAAGACTGGCCTTTATCACTAGTTGGCGTTGGATGCAACTTCTTCCCTGACCCACTCGGAAGACTCTGCTTTTCTAAAGAGTTCTTTTGCGGTTTGCAGTTCTTCTGCTCCTTCtcgaaagtgtttttttttattgaactaGAGCTAGACTGAGActtgctgtctctctctttctctgcctttAAATCTCTGTCCAGTCTCTTAGCCTTGCGCTCCATCTCCAGTTCCCTTATCTCTTCAGCTGTTCTGAGCCTGTCATCTTTTTTCACTACCTTGGCTTTCACCTCAACTGGCTCAAACTGCTTCTTCTCAGCCAATTTGAGTAATTCTGCAAAGTTCATGGGAGGTGGAGCAGGCTTAGGTGgcccactgttttttttagatgagggcttgctgctgttgctactactactactactactattccCAGAAGAACCTGTGGTTTTCCCGGGTCTCCGCGGTTCTGGTTCCTGCTCGGGCTCTGAATCTGTCGGTTCATACTCATAATTATCCTCATCATCCTCTGGGTCAATTGAGTTATTCCTAAATCTTTCCTCCATCGATTTGTCTTCCTGCATTTCATGTTTCGATCTCCTTTTCTTAGGAAGCTCTACCACTGGGATGCCATTGTAGCCTCTGAAATTGTCCTTAGTTCTGGAAGCCATGGCTCGTGCTTTACGGTCCGACTTCAACTCAACCCTCTTTGCTAGTAGTTCTTCCTTCTGTTTCTT
>TU118574
GTGCCCCATAAGTTGATGTTTCTACAACTGAAATGGGTACTCAAAGTTAACAATTAACAAGGCCAGTTGGTTGGTAATATCATACCATTATACTCTCTCTGGCTCTTACCTGGTGGTCTCGGTGGCATCCCTGGTCTCGGTGGCATCCCTGGTCTCGGTGGCACGCCTGGTCTCTGTGGCACGCCTGGTCTCTGTGGCACGCCTGGTCTCTGAGGGACTCCTGGTCTGGGTCCACCAAAATTCTTGGATGAAATGGTCTCTGACACCACCGTGCACTTGGGTTTTCCAGGTCCTGATCCCATGCTGCCAGTTGGTCGTCCAGGTACTGGTCCTCCACTACCAGGCCGACCAGGTCCAATCCCTGGAGGCCGGGGTCCACCACCTCGAGGCTGACCCTGTAGGCCACTCCCACCAGGCCTGGCCTGTGGTACACCACCCGCTCTAGCTTGGAGCGTGCCTCCAGGTCTCGACTGAGGTTGGCTCCCGGCCTTAGGAGGGCCGCCCGATGACGGTCTCATCACCGAATTACCACTTGGTTTTAGAACAGAATTACTTCCAGGCCTTAGTTGTTCTCCCTTTCCCGACTTGTGGCCGCCGACTATAGGTCCCTGCTTCAATGAGCTACCCTGACTGGGCCTGGTCTGTTGGGAGCTACCATGCTGCGATCGTTGGCCTGTTGCAGCTGTTCCAGGAGCCCTGGTCCCAGGAACACCTGAGGCTCTTGATGAGCTTTCTTTTTTGAGGATAAGGTCACTTGCGGTGCTGGATTTGTGACTCGACGAGGGCTTAAGGCCCCCTTGTTTggctgaaacctgagaagacgCAGCTTTCGAAGGAACTTTACTGTTCATGGCACCAGATGAGCTAGACAAGCTTGTCCTGGATCTGTCTCTATCGCTGTGAGACATCTTgggtctctctctttctctgtcactaacagagaGCTTGGAAGAAGACTGGCCTTTATCACTAGTTGGCGTTGGATGCAACTTCTTCCCTGACCCACTCGGAAGACTCTGCTTTTCTAAAGAGTTCTTTTGCGGTTTGCAGTTCTTCTGCTCCTTCtcgaaagtgtttttttttattgaactaGAGCTAGACTGAGActtgctgtctctctctttctctgcctttAAATCTCTGTCCAGTCTCTTAGCCTTGCGCTCCATCTCCAGTTCCCTTATCTCTTCAGCTGTTCTGAGCCTGTCATCTTTTTTCACTACCTTGGCTTTCACCTCAACTGGCTCAAACTGCTTCTTCTCAGCCAATTTGAGTAATTCTGCAAAGTTCATGGGAGGTGGAGCAGGCTTAGGTGgcccactgttttttttagatgagggcttgctgctgttgctactactactactactactattccCAGAAGAACCTGTGGTTTTCCCGGGTCTCCGCGGTTCTGGTTCCTGCTCGGGCTCTGAATCTGTCGGTTCATACTCATAATTATCCTCATCATCCTCTGGGTCAATTGAGTTATTCCTAAATCTTTCCTCCATCGATTTGTCTTCCTGCATTTCATGTTTCGATCTCCTTTTCTTAGGAAGCTCTACCACTGGGATGCCATTGTAGCCTCTGAAATTGTCCTTAGTTCTGGAAGCCATGGCTCGTGCTTTACGGTCCGACTTCAACTCAACCCTCTTTGCTAGTAGTTCTTCCTTCTGTTTCTT

Function

GO:

id name namespace
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0005874 microtubule cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0099513 polymeric cytoskeletal fiber cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
TU118573 True 1682 lncRNA 0.51 2 26229603 26231320
TU118574 False 1682 lncRNA 0.51 2 26229603 26231320

Neighbor

gene id symbol gene type direction distance location
tmem86a tmem86a coding downstream 2806 26209845 ~ 26226797 (-)
b4galnt4a b4galnt4 coding downstream 39597 26032395 ~ 26190006 (-)
abtb2b abtb2 coding downstream 202519 25976400 ~ 26027084 (-)
ldha LOC104920463,LOC100534427 coding downstream 481405 25738948 ~ 25748198 (-)
lrrc56 LOC106573360 coding downstream 526931 25692735 ~ 25702672 (-)
si:dkeyp-19e1.3 LOC103366057,LOC107688560,LOC107553860 coding upstream 12626 26243946 ~ 26267018 (-)
si:ch211-236l14.4 LOC103366054 coding upstream 72046 26303366 ~ 26327374 (-)
igf2b igf2 coding upstream 263862 26495182 ~ 26503238 (-)
th th coding upstream 273780 26505100 ~ 26512528 (-)
osbpl5 osbpl5,LOC104951242 coding upstream 355830 26587150 ~ 26652111 (-)
G88016 NA non-coding downstream 130792 26098557 ~ 26098811 (-)
G87986 NA non-coding downstream 254451 25974792 ~ 25975152 (-)
G87977 NA non-coding downstream 273174 25954338 ~ 25956429 (-)
LOC120563936 NA non-coding downstream 348622 25877700 ~ 25880981 (-)
G87964 tsg101 non-coding downstream 493480 25735499 ~ 25736123 (-)
G88035 NA non-coding upstream 2717 26234037 ~ 26234507 (-)
G88030 NA non-coding upstream 11321 26242641 ~ 26243620 (-)
G88042 NA non-coding upstream 49138 26280458 ~ 26285437 (-)
G88054 NA non-coding upstream 68254 26299574 ~ 26302020 (-)
G88067 NA non-coding upstream 163004 26394324 ~ 26394952 (-)
phrf1 NA other downstream 582603 25630776 ~ 25647000 (-)
G87897 NA other downstream 632842 25596353 ~ 25596761 (-)
G87803 NA other downstream 1164115 25064752 ~ 25065488 (-)
LOC120563922 NA other downstream 2313401 23909169 ~ 23916202 (-)
G87624 LOC103358853,LOC104921025 other downstream 2488413 23738982 ~ 23741190 (-)
ptprjb.1 NA other upstream 422316 26653636 ~ 26692244 (-)
G88249 mthfs other upstream 781917 27013237 ~ 27014411 (-)
zgc:153031 LOC100703984,LOC102237950,LOC106523206,LOC105917737 other upstream 992642 27223962 ~ 27229372 (-)
G88379 panx2 other upstream 1123652 27354972 ~ 27355776 (-)
LOC120564276 LOC103371718,LOC104949276,LOC102797857,LOC100696892 other upstream 1392670 27623990 ~ 27650062 (-)

Expression


Co-expression Network