G88380 (panx2)


Basic Information

Item Value
gene id G88380
gene name panx2
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 27357079 ~ 27358179 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU119051
CCTTAAACGGCTGAGGAAGAGGATTTGAGCTTGGGATCCATTTCATCTTCTTGCGGGGCCGTTTGATGACCAGCGGCTCCCCAGCCATCTCTCCCACGCCAAGATCAGAGGGGTCCATGTGGGCATCAATTGTTTGTATCCCAGAGTCCCTCACAGTGGGTGTAGCATCATGATTGGACTGTGCAAGCGCAGCCAGCAGCTGCCTGACTACATTGTCATACATGAGGTCACTCTCATTGGTGATGAAGTCCAGCCGGTTGAGCGACTTGATGTGGTCCCTGTTCTCGTTGCAGAACATGGCCAGGATGTTGATGTCGCAGAACTGAGACTTCTGCCAGCGTCGCCGCGTTTTAATGCCAACTTTGTGTAGTTTGTCAAATACAAAGTTGGACTTGCGCACCACAAACAAGTGCAACAAATTAATCAGGATGATGAGGTTCATGGTGCAGAGCAGAGCGATATCTACTGCTGCCATGATGCGCTGCAGCTGCACAGCAGGCAGCTTACAGTTGACCCTGAGCTTCAGCTCTTGATAGCTGCTAGTGTCTGGTGGCTCACCCAGCGCACAGGTGAACTCATTCTGCCTCTGGCGGGCATAGTAGGCGCTCAGGTAGGAAATGGGGATGGAACTGAGGCAGACAATAGCCAGGTGGCGTCCCAGGTAAAGCTTAGCCAGAAAGTTACTTTGGCCTCGTCTCTCCAAATATTTCTCAAACAGGTTCTGCTCGGGGCTTTTCTCCTTCTCCGCGTTCTCTATGatctccctcctctctcgcTCAGTTATGCCAGGTCCTTTGGACTGGATCTGCTTCTCGATCTTTGGGGCTCTGCCCTCAGCGGCTCGATGATAGCAGTTGTCAATCTCTTGAAGCAGGAAATTGAGCTCTGAAGTGAGCCGTGTAGAGGCAAGGAACTCCCAGCCCAAAGCAGGAATGTACATGATTCCAGCGAAGGCCAGCAGGGCATAGGGCAGGAACTTGTGTTCAAATAGTGAAGGCCAAAGGTGAGACTCCAGACCAGGCGCAGCGTCCCGCAGCTCTGTCCAGCAGTAGCCTCTTGCATACAGTGCCTGATCTCTGGTGAAGTTGTGTGGTGTGTAAC

Function

symbol description
panx2 Predicted to enable wide pore channel activity. Predicted to be involved in cation transport and cell-cell signaling. Predicted to act upstream of or within ion transport and positive regulation of interleukin-1 production. Located in cytoplasmic vesicle. Is expressed in brain; eye; heart; retina; and spinal cord. Orthologous to human PANX2 (pannexin 2).

NR:

description
PREDICTED: pannexin-2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119051 True 1101 lncRNA 0.52 1 27357079 27358179

Neighbor

gene id symbol gene type direction distance location
cry1b LOC103363998,LOC102799801,LOC100703716 coding downstream 116141 27229826 ~ 27240938 (-)
si:ch73-62b13.1 LOC104935271,LOC103361117,LOC104951776 coding downstream 154154 27190915 ~ 27202925 (-)
etfbkmt etfbkmt coding downstream 213768 27135856 ~ 27143311 (-)
washc4 kiaa1033 coding downstream 279246 27061216 ~ 27077833 (-)
lrrc10 lrrc10 coding downstream 306252 27049172 ~ 27050827 (-)
uri1 NA coding upstream 297285 27655464 ~ 27669472 (-)
LOC120564488 LOC101485419,LOC102777949,LOC104949269,LOC102291458,LOC100702099 coding upstream 315419 27673598 ~ 27675858 (-)
ccdc113 NA coding upstream 428493 27786672 ~ 27790974 (-)
tbxas1 tbxas1 coding upstream 440827 27799006 ~ 27811080 (-)
tspan33b LOC104940279,LOC100694777,LOC101482493,LOC106573176,LOC105926564 coding upstream 818623 28176802 ~ 28192660 (-)
G88305 NA non-coding downstream 186812 27169988 ~ 27170267 (-)
G88274 NA non-coding downstream 295943 27060552 ~ 27061136 (-)
G88272 cnot2,LOC104938479 non-coding downstream 300147 27055670 ~ 27056932 (-)
G88245 NA non-coding downstream 352894 27002954 ~ 27004185 (-)
LOC120563588 slc15a5 non-coding downstream 355621 27000941 ~ 27001458 (-)
G88381 panx2 non-coding upstream 1617 27359796 ~ 27362901 (-)
G88391 selenoo non-coding upstream 18680 27376859 ~ 27378018 (-)
G88405 NA non-coding upstream 62258 27420437 ~ 27424635 (-)
G88467 NA non-coding upstream 341441 27699620 ~ 27699935 (-)
G88510 NA non-coding upstream 617002 27975181 ~ 27975661 (-)
G88379 panx2 other downstream 1303 27354972 ~ 27355776 (-)
zgc:153031 LOC100703984,LOC102237950,LOC106523206,LOC105917737 other downstream 127707 27223962 ~ 27229372 (-)
G88249 mthfs other downstream 342668 27013237 ~ 27014411 (-)
ptprjb.1 NA other downstream 664835 26653636 ~ 26692244 (-)
phrf1 NA other downstream 1710079 25630776 ~ 25647000 (-)
LOC120564276 LOC103371718,LOC104949276,LOC102797857,LOC100696892 other upstream 265811 27623990 ~ 27650062 (-)
LOC120564781 NA other upstream 454066 27812245 ~ 27824961 (-)
tspan9a tspan9,LOC103365760,LOC106534164,LOC101481610,LOC108237543 other upstream 781107 28139286 ~ 28382715 (-)
G89085 NA other upstream 3363929 30722108 ~ 30722503 (-)
G89241 NA other upstream 3884989 31243168 ~ 31268469 (-)

Expression


Co-expression Network