G88391 (selenoo)


Basic Information

Item Value
gene id G88391
gene name selenoo
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 27376859 ~ 27378018 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU119063
TCTAATCTTTGTATCACTACTTTGAAATGACATTAcacgtcatttagctgacgcttttatccaaagcgacgtACAATTGCTATACATGTCAAATGCCgcatgcctctggagcaactatgggttaagtgtcttgctcagggacacattgggaattgaacccagatctcccacaccaaaggcttgtgtcatatccactgcgccatcaccacccagtTGTGTTTTGTAACGTTTTGATTATATTTCCAACCTGGgtgcacaactaaaacacagcTGGGGTAAACATTCGGGCGTACGAAAGTGTTGAGTCCTGACCTCAGAGAAGTCTCCATTCTCAGCGGCCTCAATTGCATTCTGGGCGATGTAGTTCCTGAGCACCACACGAGGGTTGGCGCTGTCCATCACCGTCACCCTCTCCTCCTGCGCGGCCCGCGCGTCGCTCTGGCCTTCCATCTCCCGAGCCAGACGCTTCCTATAGCGTGTGATCCAGTGGCTCCACTCCTCCGCCTGTTGGGTTTTCAGCTCTTCCTGGCTGGTCTCCATCAGGTCTTTCAGTTTGCTGAGTCTCTCCAACTGCCTTGCAATTGTCGTCCGGTCAGAGATCATCTGGAACAGCGCTGGGTTACTCTGAGCCATAGAGAGCAGCATCGCCAGCTCACTGTCAACAgcagacagaaaacacacagtcatcatcttttttttggCATGTTGGATAAAGCAAACCAGTGCTGCCAGTGCAGGCAATCCAGCTTTTAACTGTTGTTATGTACGCTATGGGGAATCTGAGGTAACAAGATGAACTAAACAAAAACCTGACTAGTAGGTTCT

Function

symbol description
selenoo Enables protein adenylyltransferase activity. Involved in protein adenylylation. Located in chromosome and mitochondrion.

NR:

description
PREDICTED: selenoprotein O

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119063 True 825 lncRNA 0.49 2 27376859 27378018

Neighbor

gene id symbol gene type direction distance location
cry1b LOC103363998,LOC102799801,LOC100703716 coding downstream 135921 27229826 ~ 27240938 (-)
si:ch73-62b13.1 LOC104935271,LOC103361117,LOC104951776 coding downstream 173934 27190915 ~ 27202925 (-)
etfbkmt etfbkmt coding downstream 233548 27135856 ~ 27143311 (-)
washc4 kiaa1033 coding downstream 299026 27061216 ~ 27077833 (-)
lrrc10 lrrc10 coding downstream 326032 27049172 ~ 27050827 (-)
uri1 NA coding upstream 277446 27655464 ~ 27669472 (-)
LOC120564488 LOC101485419,LOC102777949,LOC104949269,LOC102291458,LOC100702099 coding upstream 295580 27673598 ~ 27675858 (-)
ccdc113 NA coding upstream 408654 27786672 ~ 27790974 (-)
tbxas1 tbxas1 coding upstream 420988 27799006 ~ 27811080 (-)
tspan33b LOC104940279,LOC100694777,LOC101482493,LOC106573176,LOC105926564 coding upstream 798784 28176802 ~ 28192660 (-)
G88381 panx2 non-coding downstream 13958 27359796 ~ 27362901 (-)
G88380 panx2 non-coding downstream 18680 27357079 ~ 27358179 (-)
G88305 NA non-coding downstream 206592 27169988 ~ 27170267 (-)
G88274 NA non-coding downstream 315723 27060552 ~ 27061136 (-)
G88272 cnot2,LOC104938479 non-coding downstream 319927 27055670 ~ 27056932 (-)
G88405 NA non-coding upstream 42419 27420437 ~ 27424635 (-)
G88467 NA non-coding upstream 321602 27699620 ~ 27699935 (-)
G88510 NA non-coding upstream 597163 27975181 ~ 27975661 (-)
G88513 NA non-coding upstream 597947 27975965 ~ 27982294 (-)
G88596 NA non-coding upstream 1140138 28518156 ~ 28523417 (-)
G88379 panx2 other downstream 21083 27354972 ~ 27355776 (-)
zgc:153031 LOC100703984,LOC102237950,LOC106523206,LOC105917737 other downstream 147487 27223962 ~ 27229372 (-)
G88249 mthfs other downstream 362448 27013237 ~ 27014411 (-)
ptprjb.1 NA other downstream 684615 26653636 ~ 26692244 (-)
phrf1 NA other downstream 1729859 25630776 ~ 25647000 (-)
LOC120564276 LOC103371718,LOC104949276,LOC102797857,LOC100696892 other upstream 245972 27623990 ~ 27650062 (-)
LOC120564781 NA other upstream 434227 27812245 ~ 27824961 (-)
tspan9a tspan9,LOC103365760,LOC106534164,LOC101481610,LOC108237543 other upstream 761268 28139286 ~ 28382715 (-)
G89085 NA other upstream 3344090 30722108 ~ 30722503 (-)
G89241 NA other upstream 3865150 31243168 ~ 31268469 (-)

Expression


Co-expression Network