LOC120564276 (LOC103371718,LOC104949276,LOC102797857,LOC100696892)


Basic Information

Item Value
gene id LOC120564276
gene name LOC103371718,LOC104949276,LOC102797857,LOC100696892
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 27623990 ~ 27650062 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU119112
AGTGATGTTGCCGtgttcccagatctcagcaattaCTTTGCTCGGAAGCCATTCCAGTGCAGGTACTGCCCCTACAGCGCCTCCCAGAAGGGCAACCTAAAGACCCACGTCCTCTGTGTCCACCGCAAGCCCTTTGACAACAGCCTCTACCCGGACCGACGCCTCCGACGCTCACACACGCCCCAGAGGCCCTCCAGATTGCCTCAGAGCTTCACGGGGGATAACCGCGCACCAGGAAGAGACCAGATTGGCATGACATCACTCTGTGGGACTTGACGTTGTCATGGCAACAGCAGATACAGACAGTTATGATTATTGTTTTAGCTTCACCTCGAAGAGGTTAGAATGATTGGATGAttgaaattgttaaaaaaaaaaaaaaaaaagttaacaacCAACCTTGATGTATAGTACATTCCAGTGTTTACTTGAAGAGCCACAGTACGTATATATCTGTAGCAAAGACGCtgcctataataataataataataataataataataataataataaagtccaTTGTGATGTGAAAGTGTAGCGAGGCTATTTAGTGCTGTTCATTTTGTCAAAAGTGTCCAAACGATTTACTTGTGTTTACATGCATCTATCAGTTCAACACTTGTCTGATAGGGAGAATGTACCGTGCC
>XM_039809137.1
atggctaccacagcagTATGCAGCACCaagcagtaccctctgagagaGAGGAAGCGTACAGTTCAATGGGGGGAATCTGGGTCCGTCTATGTGCTGGGCGTTTATGATAAAGCGTGTGAAGCGTACAGTCAGTCAGCAGTCAGTCATTCAGTTCCCCATCACTCTCCGCTGAACTCCGGCTGTCACCTCTCGAGTCCTCCGCGCCCCCGTCGCATCGGCCAGGACAGCTTCATTACCCTGTCCACCCACCCAATTAGGAGCCAGATGGCGCTTCTGGCCAATCAAATCATGGATGCAAGGATTCTCAGCAGTATGAACGGGAGAGCAGAGCTTTCCCAGTTCTTGAGAGTCACCAATCAGAGCATTGCCTCCCAGGTAAATTCCACCCAGGAACAGGACAGCCGCAAGAACAGGAAGTATCCCTGCCCGTTGTGTGGAAAGCGCTTCCGCTTCAACAGCATCCTTTCCCttcacatgcgcacacacactggCGAGAAGCCATTCAAGTGCCCATACTGCGACCACAGGGCTGCACAGAAGGGCAACCTGAAGATACACCTCCGTACTCACAAGCAAGGCATTCTGGGTAAAGGCCGTGGGCGAATTAGGGAGGAGAATAGATTGCTTCATGAGCTTGAGGAAAGGGCGATACTAAGGGACAGGCAGACGCGAGCTGGTCATGTTAGCCAACAGCAAACATCGATAATAAACCAACTTCAAAAGCCCCAACTGTTACAGACTGTCCCGATACAACCCCCATTCTTAACTAACTCTGGAGCTACAAAGAGCCAGCCACACGCATCCACATCCCCTAAGGTGACTCCCGTCCCTGATGATCCCATCCAGCCCCAACCCATCGGCTTCCGCTGCTCATTCTGTAAGGGAAAGTTCAGGAAGCAGCAGGAGCTTGAGCGCCACATCAGGATCCTGCACAAACCCTATAAATGCACCTTGTGCGAGTTTGCTGCCTcgcaggaggaggagctgaTCGGACACGTTGAGATGGCGCATATAACTGCTGATGCGGGCTTAGGGCAGAGGCCTGCGATGGGGGCCGGTGACAAGAAGAAGCCCGCTGGCGAATTCCCCTGCGAGGTGTGCGGCCAGACCTTCAGCCAGGCCTGGTTCCTGAAGGGTCACATGAGGAAACACAAGGACTCCTTTGAGCACTGCTGTCAAATCTGTGGCCGTCGTTTCAAAGAACCCTGGTTTCTCAAGAACCACATGAAGGTCCACCTCAATAAGCTGGCTGCTAAGCGTAATCTCCCTGCCGAGCATGACACCTGCGTTAACATGAACAACCTATCACAAGACCACCAGAGCACCCTCTACTCGCAGTACATCACCCGCATTCACAACAGGTTCCTCATGGCTGAGAGAGCCGACCATCAAGATTACAACCAGATACTTGCCACAGCAGGCGTTGACATGAAAGTTAGGGAGATGTTAGGGAGGATGATTTCCTCAGGCCCTTTGACAGATGCAGATTGTTCCTCTTTGCTGAGTTTAAATCATCTCCACCCTCCACTGAGCTCCACTAGCATGGAATATCTGCAGAAGATCACGTCAAACAGAGATacactcagcagcagcagcagctaccCAGGCTGGCAGATCATGACACCAGGGCTGCCTGTTGAACAGCAAATGTTCGGTCCTAAAGACCAGCAGCAGTGCTCCTCCTACCTGACTGAGACATGTGTCCCTGTAGACGATGGGAAAGTGTGTCTCGGCGACCCAGACACTAAGGCCATCAGCAGACCCGGTAGCCCAGGCAGCGCGAGTCATCCTGGGCCAGAGATGGGGAGCTCCCACTCTGGCAGTGGCCTCGACCATCGACCACAGTCTTCTTCTCCAGCTACAGGTGAGAAAGTCTACAGGTGTCCACTCTCCAGTGACTACACCGCTGCACAGGCTGCCTCCCTTGGCTTCCATCTGGATCGCTACCACTTCCCCCACTGGCAAACAAGCAGGGATCTTTCTTCTCCACTTCAgcccaccagcagcagcagctccagccccaaccccaaccccaagcTCAGACCTAGATCCAGGGAAGACTGGAGCCCAGCCCACTACCTTGGTCTGGAGAGCCACAGTGATAACGCCCTGCTCATCAACAACCAGTCGAGTGACAAAGATGCAGGTGTAGACGGCCCTCTGTCTGCTCAAACCAGGAAGTCCCAGTATGAGCCTTTAGATTTGTCTGTCAGGCCAGAGTCTGTCATGTCTCATTCAGGCATGTCTCCTGCTGTACTGGTACAGATGTCTGGAGTTTTTAGTAATAGACTCTCCTCCTCCATTACCCGCCGGCTACAAAGTTACTCTAATGCCGCAGCTGAGCTCGGTGTGAAACCTGCATATCAGCGTGACCTTTTGGTGCAGGGAACAAAAGAAGAGATAAACACACAGAATGCCAGCTCCACAGGTCACGACGGTGAAGGTGAATTTGAGAAACCCGAGCAAGGGAGGGAGGATGAAAATGATGATGCTGCCAAGTGGAAGATGCTGAAAAATAATATcctggagccagaggagctgggaAAGGCGGATTTCCAGAGTCCTGGCGAGAAGAAGCATGACAACCCGGGAACTTGGGGCAGAGCTGTGGCTGAATGTCCCGTCTCCTCTCTGGAGAACTTGGCTCCAGGACAGGCAGATCACCTCCAGCATCAGGGCGGCCTGCTCTCCTACCTCAGATCCCAGGGGAACCTGAGCAGCGCACCTGCCAGCGCACACAAAGCCAGTCTGAACGATGGGGGGAACATGGAGAAAGATGTCGCATCAGCTCGGAAGCCATTCCAGTGCAGGTACTGCCCCTACAGCGCCTCCCAGAAGGGCAACCTAAAGACCCACGTCCTCTGTGTCCACCGCAAGCCCTTTGACAACAGCCTCTACCCGGACCGACGCCTCCGACGCTCACACACGCCCCAGAGGCCCTCCAGATTGCCTCAGAGCTTCACGGGGGATAACCGCGCACCAGGAAGAGACCAGATTGGCATGACATCACTCTGTGGGACTTGACGTTGTCATGGCAACAGCAGATACAGACAGTTATGATTATTGTTTTAGCTTCACCTCGAAGAGGTTAGAATGATTGGATGAttgaaattgttaaaaaaaaaaaaaaaaaagttaacaacCAACCTTGATGTATAGTACATTCCAGTGTTTACTTGAAGAGCCACAGTACGTATATATCTGTAGCAAAGACGCtgcctataataataataataataataataataataataataataaagtccaTTGTGATGTGAAAGTGTA

Function

NR:

description
PREDICTED: zinc finger protein 219-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119112 False 647 lncRNA 0.44 2 27623990 27627071
XM_039809137.1 True 3285 mRNA 0.53 5 27624100 27650062

Neighbor

gene id symbol gene type direction distance location
cry1b LOC103363998,LOC102799801,LOC100703716 coding downstream 383052 27229826 ~ 27240938 (-)
si:ch73-62b13.1 LOC104935271,LOC103361117,LOC104951776 coding downstream 421065 27190915 ~ 27202925 (-)
etfbkmt etfbkmt coding downstream 480679 27135856 ~ 27143311 (-)
washc4 kiaa1033 coding downstream 546157 27061216 ~ 27077833 (-)
lrrc10 lrrc10 coding downstream 573163 27049172 ~ 27050827 (-)
uri1 NA coding upstream 5402 27655464 ~ 27669472 (-)
LOC120564488 LOC101485419,LOC102777949,LOC104949269,LOC102291458,LOC100702099 coding upstream 23536 27673598 ~ 27675858 (-)
ccdc113 NA coding upstream 136610 27786672 ~ 27790974 (-)
tbxas1 tbxas1 coding upstream 148944 27799006 ~ 27811080 (-)
tspan33b LOC104940279,LOC100694777,LOC101482493,LOC106573176,LOC105926564 coding upstream 526740 28176802 ~ 28192660 (-)
G88405 NA non-coding downstream 199355 27420437 ~ 27424635 (-)
G88391 selenoo non-coding downstream 245972 27376859 ~ 27378018 (-)
G88381 panx2 non-coding downstream 261089 27359796 ~ 27362901 (-)
G88380 panx2 non-coding downstream 265811 27357079 ~ 27358179 (-)
G88305 NA non-coding downstream 453723 27169988 ~ 27170267 (-)
G88467 NA non-coding upstream 49558 27699620 ~ 27699935 (-)
G88510 NA non-coding upstream 325119 27975181 ~ 27975661 (-)
G88513 NA non-coding upstream 325903 27975965 ~ 27982294 (-)
G88596 NA non-coding upstream 868094 28518156 ~ 28523417 (-)
G88613 NA non-coding upstream 1142650 28792712 ~ 28792984 (-)
G88379 panx2 other downstream 268214 27354972 ~ 27355776 (-)
zgc:153031 LOC100703984,LOC102237950,LOC106523206,LOC105917737 other downstream 394618 27223962 ~ 27229372 (-)
G88249 mthfs other downstream 609579 27013237 ~ 27014411 (-)
ptprjb.1 NA other downstream 931746 26653636 ~ 26692244 (-)
phrf1 NA other downstream 1976990 25630776 ~ 25647000 (-)
LOC120564781 NA other upstream 162183 27812245 ~ 27824961 (-)
tspan9a tspan9,LOC103365760,LOC106534164,LOC101481610,LOC108237543 other upstream 489224 28139286 ~ 28382715 (-)
G89085 NA other upstream 3072046 30722108 ~ 30722503 (-)
G89241 NA other upstream 3593106 31243168 ~ 31268469 (-)
G89365 NA other upstream 4456561 32106623 ~ 32108066 (-)

Expression


Co-expression Network