LOC120564781


Basic Information

Item Value
gene id LOC120564781
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 27812245 ~ 27824961 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU119188
gtctggcttgttcacacagcattccgggatgggagaaaaacgtgctctggtttattggcatttctttaaaccaatcacaattgtcatgggtggcgctaagcgctgGACACAATAATGTTGCCTCTACAAAATAGCTTCAGGAAGgaccttgttttggtggaacaaaaaagttgttttagttctgcaacaaaaaaaactcagattggacagatagtctggcTAGCTGTCTTGATTTACCGATTTACCGACCGAATCAACAGATAaccatagtccttataaattGTCCGGAGATAAGTAtgccaacacaaacaaagcaacaggtgagggacatccggccgaaaatgagggacatttgGCGGATCTTCCCgctgcaccggagcaatcccctaaatgaatggtcgtcgatatagactacattaTATGTAACATCTCAAAAACAACTACTTTTGGTAATTTTCAATTATACTGTCATATAtttaaagcagttttttttaaacactcacCATATTTTCTAATGTTTCTAAATACTTTTATTAAAATCTTTGCTTTTTCTCCTGAGGGCCAGCTTTTGTTTATATAGTCACCTTAATCATTTCTGTCATTACTTGACTCTCTTTACCCGCATGTTAAAACGTTTAACATCATCAGCCGTGGTAGAAAATGATTAGACATgaataaatgtatgttttttgtatAGTTATGGTTTGGTATTTTGAGAGGCCCCAGAGTTCTTCACACTTGTTATGCTTTATGTAAGGAGGCTGTGGGTGTCTGGaggttaagataagataagaaaaaGACTTCTACATGTTCCCAACTCCCATGGTAAACAGTCTGGACCACAGGCTACACAACATTGTTTTGCCTCCTCCCTGGTACCGTGATCATGCATGATTGTATGATATGGGATAGATACAC
>XM_039810034.1
ttccacactttcactcgctgatacaacccaatctgaccggggatcagttacaaattaattccactctttcaatctcaactcGTTCTTAGAAAACTGATCTTGATTCAGTGCgatgtaaacaacctgctctatgcccacccacctttatctttagccaatctacacagtgcatgcggccttctcccaatcattacattaaacaacttttactttattctgattggataattatcaCCATAATGATTAATGCCCATTGTGTAATACGGGCTAGATCGCAGTTTGacaacaaggggtgctgccaccaacaaggggtgctgccgcaCCCTCAGCACCCCTACTTCCCGCGCCTATGCCCGTTGTTGTTGTGGCGCAGATGTTTCCTCCATGTAAAACTTTTGGTATGGACTCTGCTATGAATCCgtgtgaggacagagaggagggagtcCCTGCCTCTAAAACCACTCTGTGTGGGGAAGATGACAGCCACACCAAAGCTCAGGGAATGCATCAGCAGAGACCAGACTCTCCTGGACCTGGATTAGGATCTGGATCCAGCTGTGTGCCCCTAGATAGTGACAGGTCTATGGGTCGCTTTGAGGAGTTTAATAGATCACCTCCTGATGGAAGACTTCAGCAGCAGAGTTCAGAGGGTCTCGgtggtcagtctgcccagcagcatcaaacagacctggactccatatttatgctgttgGATGAGAACATTGTCACTTTCGTGAAGAACGAGCTGAAGAGAGTCCAGAGGGTTCTGAATCCATTTTACCCAGAATGCTTAGAGATTCAAAAGGAGGGTGAGGAGGTGTTGGACAAtgaagacagagagcagagaaggagcagcagagaggcatttctgaagatcgtactgcacttcctgaggagaatgaaACATGAGGAGCTGGCTGACTGTCTGCAGAGCAGGACTCATGCTACAGTGTGCCAACATGAACTCAAGTCTAATTTCAAGGAGAAGTTCCAGTGTATGTTCGAAAAAATTGCCGaagcaggaaacccaacccttGTGAATCAGATCTACACAGAGATTGACAGCCCagagggagggactgcagaggaCAAGGATGAACACGAGttcagacagattgaaacagcatccaggaaaGAAGACGGACAAGAACCAGCAATCAGACAAGAAGACATATTTAAATCCTcacctggaagagatgaaccaatcagaacagtgatgacaaagggCGTGGCTGGCattgggaaaacagtcttaacacagaagtttaCTCTAGACTGGGCTGAAggcaaagccaaccaggacatccagttcacatttccattcactttcagagagctgaatgtgctgaaagagaaaaagtacagcttggtggaacttgtccATCTCTTCTTTactgaaaccaaagaagcaggaatctgcaggtttgaagagttccaggttgtgttcatctttgacggtctggatgaATGTAGgcttcctctggacttccacaacaatgagatcctgactgatgttacaaaGCCCGCCTCAgtggatgtgctgctgacaaacctcatcactgggaaactgcttccctctgctcgcctctggataaccacaagACCTGCAGTAGCCAATCGGATCCCTCCTAggtgtgttgacatggtgacagaggtgAGAGGGTTTACTGACCAACAGGAGGAGGAGTTCTTCAGGAAGAGATGCGGAAATGAGGAAcaggccagcagaatcatctcccataTCAAAACATCACaaagcctccacatcatgtgccacatcccagttTTCTGCTCCATcgctgctacagttctggatgATGAGTTGAAAACCAAAGAGGGGgaagagctgcccaagaccctgactgagatgtacatccgcttcctggtggttcagtccaaactgaagaacatcaagtacgatggaggagctgagacagATCCACACTGGAGTCCAGAGAGCAAGAAGATGATTTTGTCcctgggaaaactggcttttgaaCAGCTacagaaaggcaacctgatcttctacgAATCCGACTTGACAGAGTGTGGCATTGATATCAGCGAGGCCTCAGTGTACTCAGaagtgttcacacagatctttaaagaggagagaggactgtaccaggacaaggtgttctgctttgtccatctgagtgttcaggagtttctggctgctcttcatgtccatctgacattcatCAACTCTGGTGTTAATCTGCTGTCAGAAGAACAAACAACCACCTGGTTTCAACTTATAAACACACCCAAACCAACACATCtctaccagagtgctgtggacaaggccttacagagtccaaatggacacctggactttTTCCttcgcttcctcctgggtctttcacgAGAGCCCAATCAGACTCTCCTTCAAGGCCtgctgacacagacaggaagtagcgCACACATCTGTCAGGAAACAGCTGtgtacatcaagaagaagatcagtGAGAATTTGTCTGCTgagaaaagcatcaatctgttccactgtctggaTGAACTGAATGATAATTCTCTTGTGGAGGACATCCAGCAGTACCtgagttcaggaagtctctccacagataaattgtctcctgctcagtggtcagcccTGGTCTttatcttactgtcatcagaaaaaGATCTGGAGGTGTTTGACTTGAAGAAgtactctgcttcagaggaggctcttctaaggctgctgccagtggtcaaagcatCCACAAAAGCTCTactgagtggctgtaacctctcagagagaagctgtgaagctctgtcctcagttctcagctccaaGTCCTCtcgtctgagagagctggacctgagtaacaacaacctgcaggattcaggagtgaagctggtGTCTGCTGGACTAAAGAGTCCATACTGCAGACTGAAAACTCTCAGtctaTCAGGCTGTATGATCACACAGGAAGGCTGTGtttctctggcctcagctctgagctccaacccctcccatctgagagagctggacctgagctacaatcatccagaAGACTTGGGAGAGAAACTGCTGTGTGCTGGAATGAAGGATCAACATTGGAGgctggacactctcagGGTGGACCATGGTGGACTGCAGAGACTGAAACCTGGTGTGAGGAAATATGTCTGTAAATTggaactggacacaaacacagtacaCAGAAACCTccaactgtctgacaacaacaggaaggtgacataTGTGAGAGAGGATCAGTcgtatcctgatcatccagacagATTTGTCTCCTGGCcccagctgctgtgtagaaatggtctgactggtcgctgttactgggaggtcaaATGGGAAGGAAGGGTTTATATAGCAGTGACTTACAGAGGAATCACAAGGAGAGGAAACAGTAAAAACTGTTTGCCCGGAtggaatgatcagtcctggagtctgaaGTGCGCTGATGATGACAGTTTCTCCGTCTGCCACAATAACAGCAGAAAAcgcctctcctcctctgtctctgacaGAGTCggagtgtatgtggactgtcctgctggcactctgtccttctacagtgTTTCcgctgactcactgatccacctccacaccttcaacaccataTTCACTAAGCCTCTTTATCCTGCGTTTGTGGTCTCttctggttcctcagtgtctctgtgttctctgCAGGTCTGAGAGTCTCTCCTGTGGATAGAAATGCTGCTGACTGAAGATCAGCTGCTGAATTCAAAGTTCACTCTGttcaccaccacacacactgtGCACTGTGAAGCAGATCTGTCTTTGACTCAAACACAAAACATTCATTTGTCTGATGTCATCACTTTGATTATCAacatttcaacagttttttttttttttcaagattattttttgggcattttcagcctttattttgatagcaCAGCAGAagacgtgaaaggggagagaggggggggaatgacatgcagcaaagggccgcaggtcggagtcgaacctgggcccgctgcgtcgaggaataaacctctatatatgggcgcccgctctaccaaccgaGCTATCAGGGCACTCAAcatttcaacagtttaacagtaACTAGAAACATTTCATGATATGTAGTCTCACATCAcctgaccttcctccacagcactgcggaggaaggtctggcttgttcacacagcattccgggatgggagaaaaacgtgctctggtttattggcatttctttaaaccaatcacaattgtcatgggtggcgctaagcgctgGACACAATAATGTTGCCTCTACAAAATAGCTTCAGGAAGgaccttgttttggtggaacaaaaaagttgttttagttctgcaacaaaaaaaactcagattggacagatagtctggcTAGCTGTCTTGATTTACCGATTTACCGACCGAATCAACAGATAaccatagtccttataaattGTCCGGAGATAAGTAtgccaacacaaacaaagcaacaggtgagggacatccggccgaaaatgagggacatttgGCGGATCTTCCCgctgcaccggagcaatcccctaaatgaatggtcgtcgatatagactacattaTATGTAACATCTCAAAAACAACTACTTTTGGTAATTTTCAATTATACTGTCATATAtttaaagcagttttttttaaacactcacCATATTTTCTAATGTTTCTAAATACTTTTATTAAAATCTTTGCTTTTTCTCCTGAGGGCCAGCTTTTGTTTATATAGTCACCTTAATCATTTCTGTCATTACTTGACTCTCTTTACCCGCATGTTAAAACGTTTAACATCATCAGCCGTGGTAGAAAATGATTAGACATgaataaatgtatgttttttgtatAGTTATGGTTTGGTATTTTGAGAGGCCCCAGAGTTCTTCACACTTGTTATGCTTTATGTAAGGAGGCTGTGGGTGTCTGGaggttaagataagataagaaaaaGACTTCTACATGTTCCCAACTCCCATGGTAAACAGTCTGGACCACAGGCTACACAACATTGTTTTGCCTCCTCCCTGGTACCGTGATCATGCATGATTGTATGATATGGGATAGATACACTGTATAAGACTGAGTGAAGTTACTATAGCTGTTTGGTGTATTACGGTCCATGGTTACCAGCTGTATCAAGATCTTTTCTGATATTATATTTTGTTGAAATAAACTTATATGTTCATGTAATAACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119188 False 918 lncRNA 0.39 1 27812371 27813288
XM_039810034.1 True 5170 mRNA 0.46 10 27812245 27824961

Neighbor

gene id symbol gene type direction distance location
tbxas1 tbxas1 coding downstream 1165 27799006 ~ 27811080 (-)
ccdc113 NA coding downstream 21271 27786672 ~ 27790974 (-)
LOC120564488 LOC101485419,LOC102777949,LOC104949269,LOC102291458,LOC100702099 coding downstream 136387 27673598 ~ 27675858 (-)
uri1 NA coding downstream 142773 27655464 ~ 27669472 (-)
cry1b LOC103363998,LOC102799801,LOC100703716 coding downstream 571307 27229826 ~ 27240938 (-)
tspan33b LOC104940279,LOC100694777,LOC101482493,LOC106573176,LOC105926564 coding upstream 351841 28176802 ~ 28192660 (-)
cracr2aa LOC103365762 coding upstream 694097 28519058 ~ 28543251 (-)
utp4 utp4 coding upstream 1134429 28959390 ~ 28974789 (-)
has3 has3 coding upstream 1163994 28988955 ~ 29018749 (-)
tango6 tango6 coding upstream 1199316 29024277 ~ 29067687 (-)
G88467 NA non-coding downstream 112310 27699620 ~ 27699935 (-)
G88405 NA non-coding downstream 387610 27420437 ~ 27424635 (-)
G88391 selenoo non-coding downstream 434227 27376859 ~ 27378018 (-)
G88381 panx2 non-coding downstream 449344 27359796 ~ 27362901 (-)
G88380 panx2 non-coding downstream 454066 27357079 ~ 27358179 (-)
G88510 NA non-coding upstream 150220 27975181 ~ 27975661 (-)
G88513 NA non-coding upstream 151004 27975965 ~ 27982294 (-)
G88596 NA non-coding upstream 693195 28518156 ~ 28523417 (-)
G88613 NA non-coding upstream 967751 28792712 ~ 28792984 (-)
G88625 zc3h18,LOC102790709 non-coding upstream 1032510 28857471 ~ 28940229 (-)
LOC120564276 LOC103371718,LOC104949276,LOC102797857,LOC100696892 other downstream 162183 27623990 ~ 27650062 (-)
G88379 panx2 other downstream 456469 27354972 ~ 27355776 (-)
zgc:153031 LOC100703984,LOC102237950,LOC106523206,LOC105917737 other downstream 582873 27223962 ~ 27229372 (-)
G88249 mthfs other downstream 797834 27013237 ~ 27014411 (-)
ptprjb.1 NA other downstream 1120001 26653636 ~ 26692244 (-)
tspan9a tspan9,LOC103365760,LOC106534164,LOC101481610,LOC108237543 other upstream 314325 28139286 ~ 28382715 (-)
G89085 NA other upstream 2897147 30722108 ~ 30722503 (-)
G89241 NA other upstream 3418207 31243168 ~ 31268469 (-)
G89365 NA other upstream 4281662 32106623 ~ 32108066 (-)
fa2h fa2h,LOC106937201,LOC102797665,LOC107674969,LOC107707436,LOC107589178,LOC104955910,LOC107714073 other upstream 4961837 32786798 ~ 32851495 (-)

Expression


Co-expression Network