G88513


Basic Information

Item Value
gene id G88513
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 27975965 ~ 27982294 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU119238
CCGTGACTTAACAGTTTAATGTAAATCCAAGACAAAGTGTGATTACATTTCTACACATATACAATATGCATATGTGAGCATACAAATTCTCATTAATAACTCGATTCACCTCGGAGACCGAAAAAATGATCAAAAGTAACAGTGAATAACAAGCTATAACATAGTTCACCACAACGCGAGCCCCTTCTCACCCTACAGTTAGTAAAGAGGACAATTAAAATAACTATATTCTTCTATTTGACGAAGCTGTTTGTCTGTTAAAATCCTCctgtaaaatgtacaatgctATCATTAGTTTTTTTCGAAGCCTAATATAAATTCACTCCATTTTTCTACAACGAAAATGATTAAGAGAAGCACACAACATCATAATGGTAACACAAGCGCTTAGTAGCAAGTTCTCAACTTGTTAGGAGGTTTAATTAATCCTTCTTCTTATTGTCATTATTATAGTTATTTAAACATTCTATAAAGCCAGTAAAATATCCATTCTCATAACATACTTAATAATATTAGGCTAAGGAACAGGGTATACATAGAACGCTAACATCAACAGATTGAAATAATGAGACATCACACCCCAATAAACAAAAGTAAATAAGAAAAGACAATTAACAGAGAAGTATACTAGGAAATACTGCAGCACACATTAGCTTTATCGACAAAGAATGAGATTTTACACTGTTGAGAAACCATACAGCAATGGACACAAAAGGGGGTCAGGGTTTGATGCACTCTTAGGTCTttagaaaatgtaaataaaccgATAAACCGCTTGCGTGAGTATTCTTGTGCAAGTAGCTATTTGAGAAATTGAGCTTCTCTAATTGACAATTTTGAGAATGTCCTAAAAGGGATTGTGACTTTGAGATGACCGCTAGCTTCAGATGGATATTTTTGTAGTGTAAACATGCAAATCAGACTTTGAATGTAGCTTGGTTCTACCACTTCTAGATTCCATTTATTAACACCACAAAAATAGCTATCTTTGGCTAGAAATGTCTCGGAAAGTAAAATGGGAAAAAAGCTACATTTTCAGTGTCGAAAGTAGGACCAAAGGTCTTACAACACCGCAATTAGGGGATTTGACGTAGAAAATGAATCTATATCCTAGCCTGGTTTTACACAAATTAGAATATATCAAGATAGTAGGAAAACAATCGTATTTCAATCAAGTTTTGGTTCATAAATACATCGATTGTAATCACCTGACACCCTCTATCAGTGATGGCATCAAACCTTGACCACCTCACCCTGAATTCCCCCAAGGAATAGCCAGCAAAAAGGAGGAGCAGATCTCCTTAATGAAaagtcaaaaacaaaacaaaaaacaaacactctcATCCGAAAAAAAGGCTTTAAGAATGCTTGTGGTGCTAGATTATGAATTTCCTGGTGACAGAGAGGACATCAGCTAAAGAGGAATCCACCTAACACCTGCTCCTAACCCCTCTGTACTTTGGGAGGCGGCTGCGGCATTTGCCGAACGATTTATACTGAACGGGTTGATGTTGCAGGTGGTCTGTACACTTCTCGCTGAGCTCCAAGTCACCTTAGAGGAGTTTGTCTGAAGACTAATGTAGCACTGTGCGCCATTATGCGTCTCAGGAATGTTTCTCAGTGGTTCCAAAAGctccaggaggaggaggaggaggaggaggagaggaggaggaggaggagtattCACGGTAACACCATGAGCAAAGCTGGAAGTTTGAGTGTATTTGAAAGGAGAATGCCAGGCTTCATAGAGAGTGAGACACTGCCTTATTCAGTTTTCCCTAATTGAAATGTCACCTTAAACCTTTGGAGGTATCGTTGGTTATTTGGAAGGCAGTACTCTAACAGTAAAGTCGCTAGCTGGGAAGGCTATGCTCACCTTAACAACACGAAACATTGTAACACTCTACTTAAGCACATTTTGGTAATTGTAAGGTCACTCGATCTACGTTAATGCTCACATTTctgcttccccctttttttttttttataaaacacaaaacattggCTATGTGAAAGAGAGTAATAGACAAAGGTATCATACACATCAAGTCATTTTCCACAATGTTGCGCATACAGGGCTTCTCTTAATTGGATGTTTCATTTGAGAATATATAGCGATTATTTGATATCCCCCTAATCATGAGGATAGTGGTCCTTTTACATTACTTCTCTCATATGGGATTTTGCTGGCGATCAGATGTATAATTATTGCATCATGCATGGCCACAAACGGTGTAGAAATTAAATGGTCACCCACTGAGAAAGATCTAAAGCCATTTCAGATGCCGCAGGTCACGTATTACATTCATTTTGTGCGGGTGACCATGGTTTTAAAGGTATAGTTGGTACATTTTTGATTAATCCATTTTTACAGGTCATTCTATTTCATGGCACCCTAATGTAAAATTCAATTCATTTTCATACAACACCAATAAAGCTACAACATCAACaacgtaaaaaaacaaaacaacaacaacagtgtgAGGAGTCatgaaagcaaaacaaaaaaaagcttttaaaacaGACTGCAGCTCTTCTTAAAGTTGAACATCCAGCTTCTAAACCAATTAACGACTGCTGTATGCATTAAGTATGTTAAATCCTCCTTGTCTACATCATATGCACACATGCATTTGCTTGGGGGTAAAATAACATGTCCTCAAAAGCACTTATAGAGCGTTTCAAAATGAGAACAGAAGTTATTGCCTGTCTGCTCTAGCAACGCTGTGGGGGATTgcttgtactgtactgtactgtgctGAACTGTACATGATCCATCTGTTGAATTCTTTGGTGGGAAGAgcgaaaaaaagaagaaaaaaaagtcctagtgtGACAATACTATCCCCGTGCTGACAGAAGAGGGGACAGGACAGCAGCGTAGCATGGGCAACGCCAAATTCCCTCAAACAGTGGAATGTTTCAGTAGTCTGTCTCATAACAGAGAAGCCAAAAGATTTCAATGGAAAATCATCTCCCTTATGCGTGTGTGCTTAGGCCCCAATGACCTAGAGGAAATTAAGtagatcaaatcaaatcaaataaaaagaCAACAGAACAGAGAAGAATGGTGTAACCAGCAACGTACTACGTAATCACATCTTTAACTACCCGGACCATAGGCTTGCATGCTGGAGCTGACGGGGAAGTGGAGAGTTGTGGGAGGAAAAAGTACCAGGATGACAAACCACTCTGGGGCCCGTCAAgggatttcttttttcaaaatacacactctgataaAACATCCACAAGAATTATTGCAACAATctctaaaaaataaacacaacatgTACTACAGCCAGGTCAAAAAAAGTTCAAGATGATGTTAAgttaaacagaaataataataaatcactTCACATGCAAGTACTATGGCATACCATGAATGAGAGGGGAAGGCTTTCACTAAAACCACCAGCAGTACTGATGTGCCTACGTTCAAGAGGACAAAAGAACAGAGATTATTTGTATCATTGgctacaagaaaaaaagaaagaaaaaaagatgtccGTTAAATCAAGCAGCAAACACACTAACCGACATCGCTATTGGTTCTCTAAGTGTTCCGGTATCCCCGTTTCGGCTGGCGTGGCGATGTCTGTGGTGTACCTGGTTCGAAGACAAATGGACAGTGGCAACAAATGGTCCACACGGTGCCCTTCCAGGTGTATGCTGTGCCATCTCCCTTCTGTTCTGTTCTTGCAGCTCTGAGATGCTACCCAAACCTCAAGCGCAACAAATAACTTCCATATATCTTTGCTGGAGAAATCAACGACGCCGCCAGCAacaaatgacaacaacaaaaggaTTCGTGTCAGAATTAGAAGTGTGCATTCAGGTAAGGTAACGCCCCTTTTGGGCTCCTACCAACCACCCGGGCTCAGTGTTACTATCAACCTGCTCAGTGCCAACTTGCTACCATTTGAATCCCATTTAAGATAGAGCGTTTCACCCTGCCCTCCACAGTCCCTACCTAAACTGACCCTACGCTTTCAAACAGCTCCCTCACTCGTGCCTACACAGAATCTCTCTCTCAAACAACCCTCGATACTCTGCCTCTTCTCTGCTGCCAGGCTATCCCTATAGCCTCACAGAACCCCCCTCATGGCAGCTATTACTTTCTGTCAGGCCCTTCTCTCGGACTAGCTTTAAACCTTGAAAAACAACCTCTACTGTGTCTCACACACTGTACTGTAACTCTTTACCTGTACACGAATACTGAGCTGATATCTCTGCTCCCTAATCACGATGCATAAATTCCCTCGCgtgattacaaaaaaacaaaaacaacgaCAAATATATTTCAAACTAGAGCCACATTTAGGGTGCCACTGTGATATAAAGGTTTACAGCTACAgctatactgtacattttcatATTTACATCAATATCCAGAGCAAAATGTAACAAGAATTTTATCTATGACTTTGGTAAGTACCCCAGGCAAGTTATCTCATGCACACATAATAAAATAGCTCAGCGTGATAACGACTCTGACATTAATCTTCATCATGTATAGTATGCTGTCATTAAGAACAAGATACAGCAAGGGGCTGAGCCTACACCTGGAAGAGAGCTACAACTGCCCCGACTAGGATGTGAAACCAGGGAAACATGTGTCTCTAGGTATAGCTATAGTCTCTTGTGGCTTTCAGGATCCAAGCCAAGTAAACTGTGTCGTTATAGTATATGTAAGGCACTACGAGGGAACAATGGTCAAAAACTAAAGACTGAAGAGAGTTTTAAGGAGGTGGACTACACACGCATGGCTGACAgtagcacacacagacaatcacGTTGTACATGCCTATGTTATAATAACCACTTTGTGCAAtcacatagaaaaaaaaagaggaacaaaTAAATCTATTGGTatcaggaaaaaaaagttgtcTTCTTAAAACAAACAGGTGCAGACTGCTACATTCTAAGAACGGGGCCCAGCTAAGACACCTAGCTAAAACTGAAGTATCATCATAAAGGTGAAACATAAAGGAACAAAAATATCTATAAATACACTAAAAAGTTTGTTGTCTTCTGTTGGTTATATTTCCAGAAGCCTCCTCTGGCTGGAGAAGGTGGAGTGTGGGGAGTTGCCTCTCTGTTCGCCCCACACCGTGAATGATTTGGAAATATTAAGACAGTTCAAGGCCAtcaatattttgttttctttgaagaGCAGCAGGTTTCCGTATTTCACCTTCTCCCAAATCTCTTGGGATTCCAAACTTCCAGTCAGTAACCCCTGTTCAACAGTCACTTCCCAAATTTAAGAggggaaaataaaagaaaaccaaCCAGAGAACCTCCACTGTCCCAAAAGGCCTGTTTCAAACTTCCCTGTAAAACTAATGAGACATTACTTTTTCTCATAAAGTAAAGTGAAGAATAGAcgaggaaaaaaaagcaaaaactggCCCtttcagaagaagaaaaaaattattgaaaaaaagaacatcTTGAACTGTACCCCTCTGAAATTCAACCCCATCTTTCCCTTCTAGAGAGGCTGtgaatctctttttttctttctctctctgtcgttATATCTTCAAGTTATACGTGACAGTTTCATGAGGATTGCatgttcctctgtctctgtttatGTCTGAGGTCGAGGAGAGGATGTTTAGGATGTCGACGGTGTTCGGGGCGGTTGGGTTTcgggggcagcagcagcagcagcagcagcagcgctggCTCAGGCTCTCCAGTGTCAGTCAGTGTCTTCTCTAGAGGTAAGGGTACTGGTTGACCTTAGTGGGGCTCAGCGGGTATCCAGTGTAGACAGTGGAGGCGGGTGAAGCGCTGATGTAGGCCTGGTGGGCAAACTGGGCCTGGTACTGGCTGTGGTGCAAGGTGGGCGAGGGCAGCACGCGGTGGCCCATGCTGACTGGGACCTGGTGGACGATGCTCGGCGGGTAGCTTCCGTGCTGGACTGCGTGGTGGCGCGCCGAGCCCTGTGACGCCACCAGGTGGGCCACGGTGCCGGTGGAGCCCAGAGCAGCAGGGGCTGTGTAGGTGTAGAGGTGGGGCTGGCTGGGTAGGTGTGTGGCAGCCAGGTGCGGGTGGACATTGCCCGTGTGAGAGGGGCTATTGTGATGGAAGGAGTACGGGGCCTGAGTGGCGATGGTTGGGGTGATGTAGGCCTGCTGGCGTCGATGACCATTTCGCTCGGCTACCATGTGCTGCTGGGCCTGGAAGAGGAGATGATAAAAGGGGCTGAATGTCAGTTGTATTGCTCGAGGATATTTCAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119238 True 6262 lncRNA 0.42 2 27975965 27982294

Neighbor

gene id symbol gene type direction distance location
tbxas1 tbxas1 coding downstream 164885 27799006 ~ 27811080 (-)
ccdc113 NA coding downstream 184991 27786672 ~ 27790974 (-)
LOC120564488 LOC101485419,LOC102777949,LOC104949269,LOC102291458,LOC100702099 coding downstream 300107 27673598 ~ 27675858 (-)
uri1 NA coding downstream 306493 27655464 ~ 27669472 (-)
cry1b LOC103363998,LOC102799801,LOC100703716 coding downstream 735027 27229826 ~ 27240938 (-)
tspan33b LOC104940279,LOC100694777,LOC101482493,LOC106573176,LOC105926564 coding upstream 194508 28176802 ~ 28192660 (-)
cracr2aa LOC103365762 coding upstream 536764 28519058 ~ 28543251 (-)
utp4 utp4 coding upstream 977096 28959390 ~ 28974789 (-)
has3 has3 coding upstream 1006661 28988955 ~ 29018749 (-)
tango6 tango6 coding upstream 1041983 29024277 ~ 29067687 (-)
G88510 NA non-coding downstream 304 27975181 ~ 27975661 (-)
G88467 NA non-coding downstream 276030 27699620 ~ 27699935 (-)
G88405 NA non-coding downstream 551330 27420437 ~ 27424635 (-)
G88391 selenoo non-coding downstream 597947 27376859 ~ 27378018 (-)
G88381 panx2 non-coding downstream 613064 27359796 ~ 27362901 (-)
G88596 NA non-coding upstream 535862 28518156 ~ 28523417 (-)
G88613 NA non-coding upstream 810418 28792712 ~ 28792984 (-)
G88625 zc3h18,LOC102790709 non-coding upstream 875177 28857471 ~ 28940229 (-)
G88636 NA non-coding upstream 905710 28888004 ~ 28889684 (-)
G88706 NA non-coding upstream 1108736 29091030 ~ 29093595 (-)
LOC120564781 NA other downstream 151004 27812245 ~ 27824961 (-)
LOC120564276 LOC103371718,LOC104949276,LOC102797857,LOC100696892 other downstream 325903 27623990 ~ 27650062 (-)
G88379 panx2 other downstream 620189 27354972 ~ 27355776 (-)
zgc:153031 LOC100703984,LOC102237950,LOC106523206,LOC105917737 other downstream 746593 27223962 ~ 27229372 (-)
G88249 mthfs other downstream 961554 27013237 ~ 27014411 (-)
tspan9a tspan9,LOC103365760,LOC106534164,LOC101481610,LOC108237543 other upstream 156992 28139286 ~ 28382715 (-)
G89085 NA other upstream 2739814 30722108 ~ 30722503 (-)
G89241 NA other upstream 3260874 31243168 ~ 31268469 (-)
G89365 NA other upstream 4124329 32106623 ~ 32108066 (-)
fa2h fa2h,LOC106937201,LOC102797665,LOC107674969,LOC107707436,LOC107589178,LOC104955910,LOC107714073 other upstream 4804504 32786798 ~ 32851495 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G96677 hipk2 non-coding NC_047600.1 CM018546.1 9417586 ~ 9503941 (-)
mexican tetra (Astyanax mexicanus) G157667 hipk2,LOC107722467,LOC107587022 non-coding NC_035914.1 CM008317.1 11136430 ~ 11143469 (-)