G89360 (spon1,LOC108243468,LOC100710117)


Basic Information

Item Value
gene id G89360
gene name spon1,LOC108243468,LOC100710117
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 32081393 ~ 32137617 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU120329
CTCTGCCTCATCCTGCGGCCTTTTTCACACGTAGCGCTGCTACAGGCTGACCAGGGAGACCAGCCTGAGTAGATACATGTCTCTGGTGTGTCATcttcttccttctcctcctgtCCAATATCAGCTACAATGTCATTTATGGTGTCTGGGATCATATTACACTGCTCTCCCTTTCTAGCGATGCGTTCCACCACCAGCTTGGCTACAGGGGTAATTGCCCCTCCCTCTGGGTCATAGAATGGGCTCTGGGGGTGGTCCAAACTGGTCAAGGGTCGGATCTTCTCTTGAGGAAAGGTGGGCTTGTTCGGTGACTCATATGTGACACCATTGTCAGTGCCTGCATCCCAGGGAATGAGGTCTGTCTCCAGCCTCTGGACCCAGCCACACTCCTTAGTGCAAAGGTCCTCTCCTGACAGCCCCACATTCCAGTCTGGGCTGGGCCCAAGCATGGTGAGAAAGGACATCAGGTGACGGGTCCGATCCACAGAAAACTCTGCTGATGGAGCAGCTCGC

Function

symbol description
spon1 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in cell adhesion. Predicted to act upstream of or within positive regulation of protein binding activity; positive regulation of protein processing; and regulation of amyloid precursor protein catabolic process. Located in extracellular space. Colocalizes with collagen-containing extracellular matrix.

NR:

description
PREDICTED: spondin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120329 True 513 lncRNA 0.54 4 32081393 32137617

Neighbor

gene id symbol gene type direction distance location
LOC120563896 NA coding downstream 1647505 30427682 ~ 30433888 (-)
LOC120563898 cetp,ryr2 coding downstream 1696545 30357654 ~ 30384848 (-)
LOC120563899 LOC107714409,LOC108276653 coding downstream 1755056 30307546 ~ 30326337 (-)
slc12a3 slc12a3 coding downstream 1830728 30209164 ~ 30250665 (-)
pth1a NA coding downstream 1979944 30096245 ~ 30101449 (-)
LOC120564289 LOC101470282,LOC100710380,LOC106676433 coding upstream 170713 32308330 ~ 32484713 (-)
LOC120564482 NA coding upstream 246747 32384364 ~ 32386784 (-)
LOC120563339 NA coding upstream 357787 32495404 ~ 32548844 (-)
tcp11l1 tcp11l1,LOC102792814 coding upstream 414962 32552579 ~ 32562730 (-)
LOC120564368 LOC107714737 coding upstream 432452 32570069 ~ 32572723 (-)
G89357 NA non-coding downstream 51579 32029267 ~ 32029814 (-)
G89344 LOC107094903 non-coding downstream 102424 31906799 ~ 31978969 (-)
LOC120564414 NA non-coding downstream 248181 31826766 ~ 31833212 (-)
G89326 NA non-coding downstream 269135 31811845 ~ 31812258 (-)
LOC120564591 NA non-coding downstream 361376 31719472 ~ 31720017 (-)
G89369 NA non-coding upstream 43168 32180785 ~ 32183719 (-)
G89385 NA non-coding upstream 124356 32261973 ~ 32267015 (-)
LOC120563490 NA non-coding upstream 133630 32271247 ~ 32271717 (-)
G89395 NA non-coding upstream 173280 32310897 ~ 32311111 (-)
G89522 NA non-coding upstream 724683 32862300 ~ 32862566 (-)
G89241 NA other downstream 812924 31243168 ~ 31268469 (-)
G89085 NA other downstream 1358890 30722108 ~ 30722503 (-)
tspan9a tspan9,LOC103365760,LOC106534164,LOC101481610,LOC108237543 other downstream 3698678 28139286 ~ 28382715 (-)
LOC120564781 NA other downstream 4256432 27812245 ~ 27824961 (-)
LOC120564276 LOC103371718,LOC104949276,LOC102797857,LOC100696892 other downstream 4431331 27623990 ~ 27650062 (-)
fa2h fa2h,LOC106937201,LOC102797665,LOC107674969,LOC107707436,LOC107589178,LOC104955910,LOC107714073 other upstream 649181 32786798 ~ 32851495 (-)
znf319b znf319,LOC102797175 other upstream 768388 32906005 ~ 32913030 (-)
G89849 mmyhl2,mmyhl1 other upstream 2086644 34224261 ~ 34225516 (-)
G89870 LOC105899468,LOC106564289,LOC105009107,LOC106597831,LOC106591119,LOC103392864,LOC106597772 other upstream 2153186 34290803 ~ 34331996 (-)
G89873 LOC100698998,LOC102198497,LOC102789814,LOC102294989,LOC101481490 other upstream 2176914 34314531 ~ 34315143 (-)

Expression


Co-expression Network