LOC120563319 (LOC102079624,LOC102777822,LOC103353701)


Basic Information

Item Value
gene id LOC120563319
gene name LOC102079624,LOC102777822,LOC103353701
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 17609100 ~ 17617514 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807412.1
CAGACACGTTGCCTTGGGAGAAGCAACACGGGCCGATTgctggatgtaacgttactgtctCCGCACCATACAGTCTATGCTCCACACTCACACAGCGCACGTCCAACACATCAGCTGCTCTACTCTCGACCCGGCAGTCCTGCTGGATTTAACGCTCAACAACCAGCCGCTCCATCCTGGGAAGGTCAGTGATGGTCAGTGCTAGTTAGAGCCTGCAGCCGAGGATGTCTGCTACAGATTCGGACAACTCCATTGACTGGCTGGCTAGTGACAATGAGGACGATGAGTGTGAACAAGAGTTTGACTGCACCAGAAAGCATAGCCAGACAGAGGCTCCTTCTTCCCCCAGCACCCCACCACACCTGGGCACGTCTGACAGCAGCTGCCGCCAGAGCAGCGAGGTGAAATGGGGTGACGGTAACTGGAGCGAGGTCAGGGAGGCCTCCAGCCGGGGATTTCCCCACGGCTGCACTGAGACATGGGTCAGTGCCATTGGactgtgtaaaacacaacaaggagACAAAGCAAATGGCAAAAACACTCAGCAAGCACCGAAGAGACCTCACAGCTCCACTGAGGAGAAGTGCAAGGAACGGCAGCTCATTTCCAATGTGTCAGAGAAAAACCGAATTTTCAGCAGAAAGtgCATGGAGCTACAATGCTACATTCATCCACTGTCATCTATCTTGAATGGCCTCCGTTCAGGCAGATACAGAGAACGACTCAGCAGTTTCCAGGAGAGTGTGGCCATGGACAGGATTCAAAGGATCATGGGTGTCCTGCAGAACCCCTGCATGGGGGAGAAATACATTAATATCATTCTTAAAATGGAGGAAATGCTGAAGAGCTGGTTCCCTAATGTAAAACTCAGAGACCAACTCACTGTCACCCAGACAGAGGAAGCTGTTCCTTCCAAGAAACCGAAGCTATCTCCAGTGACCAACACTGCAGTCATGAGCCCCGTCACTGTCAGAGATCCTCCAGCCGGCGTCAAAACCCTGAGAGTCACCGACCTCACTCCTCCTGGAGCCTACTCCGCCAGTAACCTGAAGTGGCTCCACACGTCACCCATCTGCTCCCCCATAGCAGAGCAGGCCCAGACTGGCTCCAGGCACCTGCTGTCCACCAGAGACCTAACGCAGGACAACGCTGTGTCCTCCAGCACAGACAGCCGCACTAAGACAGACTCGTTGCCCAGAGGCCCTCCGCCGGGCAAAATCAACGCACCCTGTCTAGAGAGGCTCCTTAAGTCCACAGAAAGCATCATCACCCGCAAGGGGATTGGGGGTTTGACGGACAGCAGCTGGTCATAGTCCACACAGACGGCTGGGCGTCCAGCTGTAAGCACCTCACAGCCCAGCCTTTCCTACCCTGCCGGGAGCCAGTTAGCTCGCTTAGCCCATTCCAGCCTTCAGGGGAGACGGCAGCCTTCAAAACGGACGTCACAGATTCCACTTTAATGTGGAAGGAGTGTTGACGAACATGTTGTACTCTCTGTATGGGAATGTGCCCTCTCTAACATGACAAGTGTCTGCTTTAGTTCCCTTTTGTTGACCtatctttgtttttgtctgcacTCTTGAATAGTGTGTATAAGAGTGGGAAGGATAGATTTCACATGCCAAGATCACCTGAGCTAGTGATTTCACAACTGAACTGTTCCTACTGGCTTGTAGATgcaataatacaatttgagtaTCTGTGAAACCGCCATTATGCCTGAAAGGGAAAGCATTACAGGAGCAGTTTGTGCtggaagggattttttttttttcagatatcCAGACATGTCAGTGGTCTACATATTGTGAAGTGCTGAAAATATGGGTAAAATGTAATGTTATTTTCTCCA

Function

NR:

description
PREDICTED: circadian-associated transcriptional repressor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807412.1 True 1852 mRNA 0.51 6 17609100 17617514

Neighbor

gene id symbol gene type direction distance location
LOC120563723 NA coding downstream 36891 17566241 ~ 17572209 (-)
lrrc61 lrrc61 coding downstream 54158 17551333 ~ 17554942 (-)
idh3a idh3a,LOC103353692,LOC100691871 coding downstream 58881 17545345 ~ 17550219 (-)
dnaja dnaja4,LOC108229883,LOC107099226,LOC106514380 coding downstream 71254 17534304 ~ 17537846 (-)
LOC120564505 rab8b,LOC103379973 coding downstream 78472 17527783 ~ 17530628 (-)
usp3 usp3 coding upstream 25331 17642845 ~ 17656358 (-)
si:dkeyp-73b11.8 NA coding upstream 42767 17660281 ~ 17664363 (-)
neil1 neil1 coding upstream 73909 17691423 ~ 17695346 (-)
commd4 commd4 coding upstream 77950 17695464 ~ 17698567 (-)
stra6 stra6,LOC102799117 coding upstream 106678 17724192 ~ 17741305 (-)
G85613 acsbg1,LOC102779547 non-coding downstream 64695 17544155 ~ 17544405 (-)
G85601 LOC101478969,LOC102214964,LOC102308915,LOC100701437,LOC102780768 non-coding downstream 91933 17515903 ~ 17517167 (-)
LOC120563415 NA non-coding downstream 513337 17090105 ~ 17095763 (-)
G85481 etfa non-coding downstream 686958 16920449 ~ 16922142 (-)
G85462 scaper,LOC102788151 non-coding downstream 706779 16901164 ~ 16902321 (-)
G85660 NA non-coding upstream 39631 17657145 ~ 17657371 (-)
G85711 NA non-coding upstream 124178 17741692 ~ 17742006 (-)
G85799 NA non-coding upstream 211994 17829508 ~ 17834884 (-)
G85802 arih1,LOC107662282,LOC107591299 non-coding upstream 224586 17842100 ~ 17845786 (-)
G85806 NA non-coding upstream 271353 17888867 ~ 17892467 (-)
G85435 NA other downstream 800684 16808056 ~ 16808416 (-)
trnah-gug_10 NA other downstream 844314 16764715 ~ 16764786 (-)
LOC120563869 frmd5,LOC104917831,LOC102299895,LOC106561170 other downstream 845382 16697095 ~ 16763718 (-)
G85321 NA other downstream 1168135 16439374 ~ 16440965 (-)
st8sia2 fam174b,st8sia2,LOC100690985,LOC101474125,LOC102798331 other downstream 1399914 16188853 ~ 16209186 (-)
fbxl22 fbxl22 other upstream 8497 17626011 ~ 17645520 (-)
ppcdc ppcdc other upstream 244199 17861713 ~ 17877065 (-)
dennd4a dennd4a other upstream 276339 17893853 ~ 17956629 (-)
trnaq-cug_6 NA other upstream 309533 17927047 ~ 17927118 (-)
G85813 rpl4 other upstream 413494 18031008 ~ 18036276 (-)

Expression


Co-expression Network