ascl1b (LOC103357271,LOC100706722,LOC104920455,LOC101171241)


Basic Information

Item Value
gene id ascl1b
gene name LOC103357271,LOC100706722,LOC104920455,LOC101171241
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 25616361 ~ 25617983 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807494.1
GTCAGATCGGCTCGTGGAGTAAGCAGTCAAGAGAGACTTGGACTAGAGTTAGCCACACGGTCCCCACGCGAAGGACACGAGAGCTGTACACTGCCAACCCTTTCCGCTCTTCTTGTCCCACCGTCAGAGGCTGCATCCATCACTTCAGAAGAAACTGTCAGCGAGATGGAAACTACAACAATCACCACCACGCAGACGGCATTCACCTTTGGACTTACTGAAAGACACGCCAGCCTCAGCCTGCACGCCCCGGCCCAGGACTGCGCCGTGCCCGCCGTGCACCCCGGCACCAACGCTGCCGGCTTCCAAAGCAAAACCAAGGTGCTGAAGAGACAGCGCTCCAGCTCGCCGGAGCTCCTGCGCTGCAAGCGGCGTCTGAGCTTCAACGGCCTCGGCTACTCCATCCCTCAGCAGCAGCCCGTGGCCGTGGCCCGGCGGAACGAAAGAGAGAGGAACCGGGTCAAACAAGTCAACATGGGTTTCCAGACGCTGCGCCAGCATGTGCCCAACGGCGCCGCCAACAAGAAGATGAGCAAAGTGGAGACCCTGAGGTCTGCGGTGGAGTACATCAGGGCTCTGCAGCAACTTCTGGACGAGCATGACGCCGTGTCGGCTGCTTTCCAGTGCGGGTTGCCATCCCCGACAATCTCCAACAGCTACTCCGCCGACCCGGAGTCGCCTCACTCCACCTACTCGTCAGACGAAGGCAGCTATGAGCCCCTGAGCTCCGAGGAACAGGAGCTGTTGGACTTTACAACCTGGTTCGACAGGTACTGAGGCGGACAGCATCCGAACCACACAGCAGCGTGTGTGCGTAAATGCGGCTGACTTCTTTTAGAAATGCTGACAAAAGACTTGGTGAAGGCATGAGAACAGTCTCGCCCTCCGTGCTTGGAAGTGATCTGTcgcctccctccctcacccGGGCTGATTCTGCATGAGCAAagcaatagagagagagagagagagagagagagagagagagagagagagagagagagagagagacttgtcGCCCTGATGTCCCCAGAACAAGGAGGGAGTTGGACTCATTCACGCGTGGAAGTAAAGAACTGTTGATGTTATGTTTGAATAAGTGCAATTAATACGTGACACAGCAGGCTCTGCAGGCACGGCGCTGCAGTTCCAGAGGACTTGTCTGATGAGTGTTTTCATCAGAGCAGGACTGCCTTCCTCTGCTGCCACGTCTGTTGGAAGACACAACTAAAGATGATGCGTCAACAGACCTTTTTCGCCATGTACATTGTTTCCTCCCCTCCCATAACAAAAAAGTGTACCATACAACGACTTGTTTTAACACGAAGACATATTTTTGTACATTGAGTCAAACAAACAATGTTGTTGAACAGCCACTGCCACTTTTCCCTGACAGTGTTGTGAGAGCCAGCTGTCAGTAAAAGGCAGCGAGTTCGCATGTGTGAGTTGTGTGACTGGACAGCAATATCAAGGCTACTACCTGTGACAGACTGTAGTTTTGTTCTTCTAAGGAAGTGGTAAGGAGACCTTTATCAATGTATGCACTTGTTCTCCGTTTCCCATtgactaaaatgtaaatattcgatttttttaacagatatattttgtgtaaaacaagttttataa

Function

NR:

description
PREDICTED: achaete-scute homolog 1b-like

GO:

id name namespace
GO:0021575 hindbrain morphogenesis biological_process
GO:0009790 embryo development biological_process
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09067 ASCL; achaete-scute complex protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807494.1 True 1623 mRNA 0.52 1 25616361 25617983

Neighbor

gene id symbol gene type direction distance location
pamr1 LOC103357277 coding downstream 229049 25302836 ~ 25387312 (-)
slc1a2b slc1a2 coding downstream 322404 25262241 ~ 25293957 (-)
LOC120564736 lrrc4c,LOC104932125,LOC100701892 coding downstream 721558 24765416 ~ 24894803 (-)
LOC120563810 NA coding downstream 1228112 24383761 ~ 24388249 (-)
rag2 rag2,LOC102798233 coding downstream 1396018 24161577 ~ 24220343 (-)
rassf7a rassf7 coding upstream 33769 25651752 ~ 25688678 (-)
lrrc56 LOC106573360 coding upstream 74752 25692735 ~ 25702672 (-)
ldha LOC104920463,LOC100534427 coding upstream 120965 25738948 ~ 25748198 (-)
abtb2b abtb2 coding upstream 358417 25976400 ~ 26027084 (-)
b4galnt4a b4galnt4 coding upstream 414412 26032395 ~ 26190006 (-)
LOC120564131 NA non-coding downstream 120056 25425552 ~ 25496305 (-)
G87888 NA non-coding downstream 171939 25442937 ~ 25444422 (-)
G87883 NA non-coding downstream 251586 25364568 ~ 25364775 (-)
G87876 fjx1 non-coding downstream 262237 25351256 ~ 25354124 (-)
LOC120564148 NA non-coding downstream 388156 25181329 ~ 25228205 (-)
G87961 NA non-coding upstream 31346 25649329 ~ 25650117 (-)
G87964 tsg101 non-coding upstream 117516 25735499 ~ 25736123 (-)
LOC120563936 NA non-coding upstream 259717 25877700 ~ 25880981 (-)
G87977 NA non-coding upstream 336355 25954338 ~ 25956429 (-)
G87986 NA non-coding upstream 356809 25974792 ~ 25975152 (-)
G87897 NA other downstream 19600 25596353 ~ 25596761 (-)
G87803 NA other downstream 550873 25064752 ~ 25065488 (-)
LOC120563922 NA other downstream 1700159 23909169 ~ 23916202 (-)
G87624 LOC103358853,LOC104921025 other downstream 1875171 23738982 ~ 23741190 (-)
G87538 NA other downstream 2117702 23494330 ~ 23498659 (-)
phrf1 NA other upstream 12793 25630776 ~ 25647000 (-)
ptprjb.1 NA other upstream 1035653 26653636 ~ 26692244 (-)
G88249 mthfs other upstream 1395254 27013237 ~ 27014411 (-)
zgc:153031 LOC100703984,LOC102237950,LOC106523206,LOC105917737 other upstream 1605979 27223962 ~ 27229372 (-)
G88379 panx2 other upstream 1736989 27354972 ~ 27355776 (-)

Expression


Co-expression Network