foxb1a (foxb1,LOC103353681,LOC101061572)


Basic Information

Item Value
gene id foxb1a
gene name foxb1,LOC103353681,LOC101061572
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 17362238 ~ 17365761 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807582.1
GCAATTGTCATGTGATAGCAAAGAGGTGGCACATTAATGGAGCGCCTCTACAGGGGTCTTTTCTGCTCATGTCACTACATAAAACTATCAGATGGTTAGAGGAAGGCCATGGAGGCATCCACTTAGCTCGTCGAGGACGCCAAATGATATTCAGCTCTGCTAGCGGGACAAGCTGACTTACTTTGCAAGAAAGACTTACAGCAGCCGTCACTCCATAAATGTGCACCGTCCGCCCGCCTGCACACTGCAGAGGCGCTCAACCTGGCTGTTTTACGCACAACGCAACTCCTGCATTGCCGGCATTGAAACTTTCCTCAGCGGTTGTTTTCATGAAGAGCGACAAGCTTTCGTCAAGGAATTAAGGgagactactttttttttgtattgctttTCTGAAAATATCGAGGATGCCTCGCCCAGGGAGAAACACGTACAGCGACCAGAAGCCACCTTACTCCTACATCTCCCTCACTGCCATGGCGATCCAGAGCTGCCCGGAGAAGatgctgcctctcagtgaaatTTACAAGTTCATCATGGATAGATTCCCTTACTATAGAGAAAACACTCAGCGGTGGCAAAACTCTCTGCGACACAACCTGTCCTTCAACGACTGTTTCATTAAAATCCCCCGGCGCCCAGATCAGCCAGGCAAGGGCAGCTTCTGGGCTCTGCACCCCAGCTGCGGGGACATGTTTGAGAATGGAAGTTTCTTGAGACGCCGCAAAAGGTTCAAACTGTTGACTTCATCTGATCATTTGGCCCCGAGTAAGCAGTCGGATGCTGCCCATTACCTCCAACAGCAAGCTAAACTGAGACTGAGCGCCCTGGCAGCCACTGGCACACACCTTCCCCAAATGTCAACTTACAACCTCGGAGTGTCTCAGTCCTCAACTTTTAAGCATCCGTTCGCCATCGAGAACATCATCGCCAGAGAGTACAAGGTCCCGGGGAGTCTGGCGTTCTCCACCATGCAGTCCATGTCTGCCGGGTACCCGCTCCACAACCAGCTGACGACCGCCTGGCCCCACATGTACAACACCAGCATGATTGACACGTCGGCCCCAATCTCCATGGCGAGCAGCGACTACAGCGCCTATGGCATGCCCATCAAGTCCCTGTGTCACGGGGGTCAGTCGTTACCGGCCATCCCTGTGCCAATCAAGCCCACCCCGACCTCCATGGCCGGTTTCTCGGCGTTACCTCCACACATCCCCGCGTTTCTATCAAACTCTCCACAGTCTCTGAGCCCGACGTCCCCACAGACAGCAACGAGCCAAAGCAGCCCTGCAACCCCGAGCGAGACTCTGACGAGCCCCTCCACACTGCAGTCTGTGGCTGTGCACTGACCAGCGACACTCTCCCCAGTAAACGAACTGCTGGCCGGCTTCCCAGGCCCCTTTACTAATCCCAAAGTTTATATTTTCTGTCGTCGGAAACTATCAAGGCGAGTTGCAGTTGCATATCGaattatttgtgtatgtgttgaaTGTGTCGCTTTAAATTGTGTCATAGAAGTCCAGCACAGAATCGCACAGCGAAGTATTGCTCttgaaaatataaattatttgaTAGTTATATTTTTCAGTTTATTGTGAAATGTGAGTGTTGAAAGTGGAGCCACTGATGGGATCCAGGGGACGTTTTGTTTTGGCACCATCAACTCTGATTTGAAGTGCTTGCAATTCCCgtggcattttttttcttcagttttatcAAATAGCAAAACTTTTGCACCGTTTCTGTGTGACCACTGTTAATGTCAATGAAATTGCGAGGCAATggctctgttgtttttttttttttttgctttttaataCTGGAATGATGGATAAGGGTATACCAAATAGGACTAGGATTTAGATTTGTTCTTACCAtccctgtaaaaaaaagaaagcaaaatgAGTTATCAAATCTTTTCAAAATGGAAAAGTAGTATTTGAGACGTCCTCAAAATGCAAgatgtgaatatttgcaaatAACTGATACTGAAATGTTGTAAGATGCACTTTTTAGTTTTATGTTTTAGATATCTATTTTCCAGAAAATGTTCTGTGAAGCATTTAATTTAAAAGGCTGTGGTGACCATGTGTATCAGATGCTGTAAatttgtacttttgttttttaggTAAAAGCATGCATTCTAAAAATTTGTGTTGGtactgttgttgttattgttgttttttgtttgtttaatttttgCAAGCATGCGTGCTTTTGAAAAGTGTGCAAACAGTCTGCAatgaattggaaaaaaaaaactggtcatCGAAATATTTTCTCATTAAAAGTGAAGTAAACAATCAAAAATGTTTCTGAAGATTTCATCTAAGACGATGTCACatattattgtttatattattattattattattattattattattattattatttatattaatacaGGTCTCATAAAGTTATTATTCAATTGGCAGCACATGTTTTTATCGGATAGGCCTACCACTTAAATTTTTCACAAaacaataatattaaataataataatattaataataatagtctTTAATAAAGacaatgataataataacaatacttTGATCTGTCTTGTATCCTGACTTGAGAGTGTGAGAGTTAGAGAGAAGCAGTGGGGAGAGAAATGAATCGTGCAGTCGATTAGGATGCATGGAGTTGCGATGCCATGGTCACAGCGCAGACAACTGGGCTCATTCATCAAgctgtaggctaaacacaattAAGCCCAAcaataaacatttacaaaagcTGCACACAGTGTCCGAATTAATGCCGTTGCATATTTTCGACTTCAAATGTCATAGAGGGCAGTTAAATAGCCTAAGTGTCCTGTTGATTTTTTCGACTGTTTCGACCTTATATTTACATCTTATTCCGGGGAACTTTATTCAACAGGTTTATAAATACAGACGGAGAATTTGTAGCAAACAAAGTGCAAAATTTAGTTTTATTCTTTCATTCGATTTGTTTGCCGGATAAAAAAAAACGCGCTTAACTGCCTCCCCTATAGAAAGCAACAGCCTATTTCGGGGTATTAAACAAATACATTAGAATTCCGTCACTATATGCAATCGAGTAGATCAAATAAAGGGTCTCGGGCCACTTCATTCTCCTTCATTCACTTGAATTGAAAGTGCAAAGAATAGCAAACTTAGACTGGGCCACCAATGTAGATTTAGCCTTTTTTCAGCAAGACAAAAAGACTGATTTTTCACAAACACATTGCTGACTGGGGAACTAGGAAACGAGCTGCAAGACCCTTTTGGAATTTAAATCCACCCCTCCCCCATGGACTGTTTGGACAACAGTGTTAGTTTTTTTCGCCCCGctttgtgcatttctgtgtgtaACATTAATTCTGACTCTGGATGATTAAATGTATTGAAACTGCAACGGCAGAttacaagcttttattttggatCAGATTGAATTTTTCTGGCTGGtcattacaattacaatttaaatcacattaacacacatagAACTTTTTCATTGAGAATATAGAAGCAATGACATCCAGcaactgaaa

Function

symbol description
foxb1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in several processes, including mammary gland development; nervous system development; and visual learning. Predicted to act upstream of or within spinal cord development; thalamus development; and urogenital system development. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
PREDICTED: forkhead box protein B1

GO:

id name namespace
GO:0061374 mammillothalamic axonal tract development biological_process
GO:0061379 inferior colliculus development biological_process
GO:0061381 cell migration in diencephalon biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0021855 hypothalamus cell migration biological_process
GO:0008542 visual learning biological_process
GO:0033504 floor plate development biological_process
GO:0007412 axon target recognition biological_process
GO:0043524 negative regulation of neuron apoptotic process biological_process
GO:0022029 telencephalon cell migration biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09395 FOXB; forkhead box protein B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807582.1 True 3524 mRNA 0.42 1 17362238 17365761

Neighbor

gene id symbol gene type direction distance location
tln2b tln2 coding downstream 286822 16993923 ~ 17075416 (-)
tpm1 tpm1,LOC103141214,LOC106946143 coding downstream 380700 16968593 ~ 16981538 (-)
lactb lactb coding downstream 395141 16963477 ~ 16967097 (-)
tmem266 tmem266 coding downstream 403821 16928741 ~ 16958417 (-)
isl2a isl2,LOC102787860,LOC102305078,LOC101486127,LOC102207021 coding downstream 443965 16913537 ~ 16918273 (-)
gcnt3 NA coding upstream 40435 17406196 ~ 17407903 (-)
LOC120563560 LOC102312947,LOC102081637 coding upstream 42228 17407989 ~ 17424331 (-)
klf13 klf13,znf746 coding upstream 109983 17475744 ~ 17487574 (-)
LOC120564505 rab8b,LOC103379973 coding upstream 162022 17527783 ~ 17530628 (-)
dnaja dnaja4,LOC108229883,LOC107099226,LOC106514380 coding upstream 168543 17534304 ~ 17537846 (-)
LOC120563415 NA non-coding downstream 266475 17090105 ~ 17095763 (-)
G85481 etfa non-coding downstream 440096 16920449 ~ 16922142 (-)
G85462 scaper,LOC102788151 non-coding downstream 459917 16901164 ~ 16902321 (-)
G85460 scaper non-coding downstream 462443 16897684 ~ 16899795 (-)
G85453 scaper,LOC102788151,LOC107662441,LOC107688925 non-coding downstream 493075 16867127 ~ 16869163 (-)
G85601 LOC101478969,LOC102214964,LOC102308915,LOC100701437,LOC102780768 non-coding upstream 150142 17515903 ~ 17517167 (-)
G85613 acsbg1,LOC102779547 non-coding upstream 178394 17544155 ~ 17544405 (-)
G85660 NA non-coding upstream 291384 17657145 ~ 17657371 (-)
G85711 NA non-coding upstream 375931 17741692 ~ 17742006 (-)
G85799 NA non-coding upstream 463747 17829508 ~ 17834884 (-)
G85435 NA other downstream 553822 16808056 ~ 16808416 (-)
trnah-gug_10 NA other downstream 597452 16764715 ~ 16764786 (-)
LOC120563869 frmd5,LOC104917831,LOC102299895,LOC106561170 other downstream 598520 16697095 ~ 16763718 (-)
G85321 NA other downstream 921273 16439374 ~ 16440965 (-)
st8sia2 fam174b,st8sia2,LOC100690985,LOC101474125,LOC102798331 other downstream 1153052 16188853 ~ 16209186 (-)
fbxl22 fbxl22 other upstream 260250 17626011 ~ 17645520 (-)
ppcdc ppcdc other upstream 495952 17861713 ~ 17877065 (-)
dennd4a dennd4a other upstream 528092 17893853 ~ 17956629 (-)
trnaq-cug_6 NA other upstream 561286 17927047 ~ 17927118 (-)
G85813 rpl4 other upstream 665247 18031008 ~ 18036276 (-)

Expression


Co-expression Network