LOC120563437 (ifitm5,LOC103379954)


Basic Information

Item Value
gene id LOC120563437
gene name ifitm5,LOC103379954
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 23900293 ~ 23904797 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807594.1
AACATTCCTAAACGGCACCGTGAAAACTGCTCACGGACATGAAGTCTCTAATCCTTCATATCCAGGATGTCTTTGTCAACAATAATGTGTTCTCTGCGTTAACATCAAATAAGTGAGAATAAAGCAGAGAAGCAGTTCCAGAGACCACCCCACTGACTTGTCCATCAAGGCCTCAGCCAGACAGCACTTCAGATGAACTCCTCCTCAACACCTTCAAGGCTTTTGAACTACACCCCCTGCCTCCACTGTCCTATGCTACCTCCGCCCCAACTCAACCACCTGCCCAAAACCACTAGGACCTGAAAGCTGAGTCTCTCTCAGGCCTGACCACAAAATTACAGACCTGCTGTATATTAAAGGACCCGGCCCATGCGTCCTCTCCTGGTCACCTCCCTCTCTATGGGCCTTTATAAGTCTCTCACACAGAGGGGGCACTACTTTCCAAAGAGGGACCGTGCTCAAGCATCTGGAAAGCTCGCCGGTTTGCAAACGCACCTACTCATCCATAGCCGGGGATCTTCTGTCTAAACGCTAACCATGGACAACCATTCGTACAACTTCCCCTCAGACTGCACCCCGCTCACCAACTGTAAGTCTGCCCGTAAGCCGGCTGGATCCACCGTGGTGAACATGGGCAACACTGGCAAGAATGCTCCCCGGGACTATCTAGTCTGGTCGCTGTGCAACACCTTGTACGTTAACTTCTGCTGCCTGGGATTCATGGCTCTCGTCTACTCCATCAAGGCCAGGGACCAGAAGACTCAGGGCAACCTGCAGCTGGCCCAAGAGTGCTCAGACAAGGCTAAGTGGTACAACATCCTGGCAGCCGGCTGGAACCTGCTGATTCCACTTCTGGCCATCGTCCTGCTCGTCCTCCTGCTCATCCACCTGGGCACGTCCGAGGGCTCCTTTGACTTCTTCGGGGAGGACGGCTTCCAAAACTTCATGAAACTGTTCAGTTGGTAAACGGAGGCatagggagagaaaaaaacaaaacacacaaagtcaACCCATTCACACTAACCGGGAGAGGGTATTTGATAGGATGCAGCAGATGAGGGCTAACTGACATAATAGCTCTTAAGAATTTTAGCCAGTCTGAGCCAAGCAATAATGGAAATCTACATGGAAATCAGGACCTGCGCTGGGCTAAAATCTGCTCAGCACTCAAATGTCCTCTTTGTGGTGCACCAGTACTAATGCTGGTATTAAAAATTACAGACTAAAACAGGACATTCAACTACTATCTGACAgttacacatacaaaaaaaatggaTAAAACATAATACTTTTGGACCATTGAGCTAAAACTAATGCTAAAAGTTTTTGTTCAGTCAAAGCAACACAACGGTATAATACTTGTGTGCCAACACCTCATCAGAATTTGTAATGTGAGTGCTGTTGGAGATTAGTATTGGTGCATCCCTCGTTGTAATGTCAGTATTAGAGGGAGTTCAGCTTACACATGGCAGTCTCCCAGACGCGGTCAGTAGAAAGGTAAAGTTGATCAAAGACTGAACAGCCTGAAATGGCGACGAGGGGAACAAACAGACTGAAGAACGGCTGAGAGATTAAGCAAGCAGCTCCTCTGGGtcctttttgttgttatttattgtatttatgttgAGTAGAAATTTTGATGACAGCGGAAATCATAAGAACAGAGTACTGTGGAGCCAAAGTCTGAATGTCACGATAATGAGAAGCCACTTGACAAAGGACGATCAACCTTCACCTCCCATTGATAGTcacttatttttcttctttcagcagttttttttccttcttcttacTATTACAAAATACATCTGTTTagtcattatttacagtattttattagTATTGTGTTGTGTTAAGTATTCTAATTTTACATCCTGTTGTTGCTGACCTCTTGCGAGTGAGCTAAATAAACCAGATACTGTTAAGTCAGTATtgcattgaaaaaataaataagtctttattttctttttca

Function

symbol description
ifitm5 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in oocyte stage I; oocyte stage II; oocyte stage IV; ovary; and primordial germ cell. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 5. Orthologous to human IFITM5 (interferon induced transmembrane protein 5).

NR:

description
PREDICTED: interferon-induced transmembrane protein 5

GO:

id name namespace
GO:0009607 response to biotic stimulus biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06566 IFITM; interferon induced transmembrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807594.1 True 1972 mRNA 0.45 4 23900293 23904797

Neighbor

gene id symbol gene type direction distance location
LOC120564460 LOC102301235,LOC102778663,LOC102214577,LOC100712095 coding downstream 6697 23880291 ~ 23893596 (-)
ptdss2 ptdss2 coding downstream 166638 23696033 ~ 23733655 (-)
LOC120564359 NA coding downstream 236490 23653545 ~ 23663803 (-)
LOC120563807 NA coding downstream 249916 23647381 ~ 23650377 (-)
LOC120563353 NA coding downstream 315726 23577578 ~ 23584567 (-)
trnam-cau_7 NA coding upstream 305 23905102 ~ 23905173 (-)
trnar-acg_18 NA coding upstream 11037 23915834 ~ 23915906 (-)
polg polg coding upstream 22631 23927428 ~ 23937460 (-)
rhcgb rhcg,LOC103380519 coding upstream 59508 23964305 ~ 23974244 (-)
gdpgp1 gdpgp1 coding upstream 81569 23986366 ~ 23988531 (-)
G87614 bmt2 non-coding downstream 162788 23680748 ~ 23737505 (-)
G87596 ankrd26 non-coding downstream 270008 23629726 ~ 23630285 (-)
G87469 NA non-coding downstream 661761 23231238 ~ 23238532 (-)
LOC120563856 NA non-coding downstream 675652 23198572 ~ 23224641 (-)
G87464 NA non-coding downstream 750949 23149119 ~ 23149344 (-)
G87695 NA non-coding upstream 133087 24037884 ~ 24039901 (-)
G87693 NA non-coding upstream 137661 24042458 ~ 24043739 (-)
G87733 NA non-coding upstream 454196 24358993 ~ 24359284 (-)
G87748 NA non-coding upstream 679561 24584358 ~ 24584608 (-)
G87755 NA non-coding upstream 688564 24593361 ~ 24593577 (-)
G87624 LOC103358853,LOC104921025 other downstream 159103 23738982 ~ 23741190 (-)
G87538 NA other downstream 401634 23494330 ~ 23498659 (-)
LOC120564579 LOC103366737 other downstream 477836 23411510 ~ 23422457 (-)
parvg parvg other downstream 1193997 22689161 ~ 22706296 (-)
LOC120564428 NA other downstream 1533315 22347170 ~ 22366978 (-)
LOC120563922 NA other upstream 4372 23909169 ~ 23916202 (-)
G87803 NA other upstream 1159955 25064752 ~ 25065488 (-)
G87897 NA other upstream 1691556 25596353 ~ 25596761 (-)
phrf1 NA other upstream 1725979 25630776 ~ 25647000 (-)
ptprjb.1 NA other upstream 2748839 26653636 ~ 26692244 (-)

Expression


Co-expression Network