twf1a (twf1,LOC102795415)


Basic Information

Item Value
gene id twf1a
gene name twf1,LOC102795415
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 22013911 ~ 22029073 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807634.1
TTTGTCGATGTAGTCCACTTCCTGCTTCTCTGCCCTGGTTTCGTCTCAACAGCTGCATCAGCCCTTTATCCGACGAAAGACACAATGTCACATCAAACGGGCATTCAAGCGGGTAACGATGTGAAGGACGTCTTTGCCAGTGCCAGGAGCGGAGACCAATATCGGGTCTTAAAGGTCATCCTTGAGGGTGAGCAGCTGACTATGGGTCCCACCAGGAAAGCATCAAAGAAGTGGGACCAGGAGTATGATTCCTTAGTGCTGCCCCTCCTCGAGGATGACGTGCCCTGCTATATTCTGTACCGGCTGGACTCCACTAACAACCAGGGCTACGAGTGGGTCTTCCTGGCCTGGTCACCAGACCACTCTACAGTGCGACATAAAATGTTATATGCTGCTACCAGAGCCACACTGAAGAAAGAGTTTGGAGGCGGGATCATCAAGGATGAGATTTTCGGTACCACAAAGGATGAAATGACTCTCAGTGGATACAAGAAATATCTGACCTCGCAGGCTGCTCCACTGCCCCTCACTGCTGCAGAGGAGGAACTGAGACAGATTAAACTAAATGaggtgcagACGGACATCAGCGTGGATACCAAGCAGCAGACTCTGCAGGGAGTGGCCTTCCCTATTCACAAAGACGCTGTTGCAGCACTTGAACGCTTTAGGGACAAAAGAATCAATTACGTACAGCTGGAAGTAGACGCTTCACAGGAGCTGATTCGGTTGTGCAACACTGAGCCAACAGAGGTTAAAGACCTGCCAATGAGAATCCCTAAAGAATCTGCACGCTACCACTTCTTCCTCTACAAACATTCCCACGAAGGCGACTACTTAGAGTCCACAGTCTTTATTTACTCTATGCCCGGGTACAATTGTAGTATCCGAGAGAGGATGCTGTATTCTAGCTGCAAAAATCCCTTGGTCGACATGGTGGAAAACAATCTCCAGATTGAGATTGAGAAAAAGTTGGAGATTGACAATGGTGATGAATTGACCGGTGATTTCCTGTACGAGGAGGTGCATCCCAAGCAGCATGCACACAAGCAGGCCTTCGCCAAGCCCAAAGGCCCTGCTGGGAAGAGGGGTTACCGCCGCATCACCCGACCCCccgcagagggagaggaggaagattAAACAGACCTCAGCACCCGACCACCACCTCCACCCCGAGCAcgtggtgggggggggaaaaTCATATTTGACACGCTTGTTTAAAAGAATAAGACAACAGCTTCAAATTCCCACAAAGTACCCCAGAGACCCAACTATGCACGCCAAGGACAACTGAGCAATGACACACTTCAGAATTTCCATTTGTAGCTTGCCAAATGGAAGCATATTTATGTATGTTAGTACAGTCAAATTTATTTCACCATGATTCAAAGAGGCCCTATCAAAGTCAAGCTTGAGGTTTTTCCATTGTTGCCAGCTCTAAGACTTTAAAGATGTTAGTGTGACTAATGTGAACTTGCGCCAATATGATAAAATCCCCCCCATTTTGAGTTCACATGCTCGAATTCTTAA

Function

symbol description
twf1 Enables ATP binding activity and actin binding activity. Involved in regulation of actin phosphorylation. Located in cytosol and nucleolus.

NR:

description
PREDICTED: twinfilin-1

GO:

id name namespace
GO:0030837 negative regulation of actin filament polymerization biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K08870 TWF; twinfilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807634.1 True 1527 mRNA 0.48 9 22013911 22029073

Neighbor

gene id symbol gene type direction distance location
LOC120563465 adamts20 coding downstream 52844 21874973 ~ 21961067 (-)
prickle1a prickle1,LOC104925408,LOC104962552 coding downstream 220030 21765682 ~ 21793881 (-)
LOC120564741 LOC104962548,LOC102797891,LOC101479938,LOC102194218,LOC102291278 coding downstream 279817 21726086 ~ 21734094 (-)
dnm1l dnm1l coding downstream 644935 21355580 ~ 21368976 (-)
LOC120563940 NA coding downstream 716312 21284373 ~ 21297599 (-)
nell2a nell2 coding upstream 62460 22091533 ~ 22211840 (-)
LOC120564446 prl coding upstream 201858 22230931 ~ 22233599 (-)
szl LOC103380347,LOC103353239 coding upstream 205663 22234736 ~ 22236927 (-)
mov10l1 mov10l1 coding upstream 210992 22240065 ~ 22265797 (-)
tubgcp6 tubgcp6,LOC107089493 coding upstream 371676 22400749 ~ 22428938 (-)
G87232 NA non-coding downstream 5516 22005499 ~ 22008395 (-)
G87148 NA non-coding downstream 288253 21724923 ~ 21725658 (-)
G87123 cntn1 non-coding downstream 464052 21546658 ~ 21549859 (-)
G87120 NA non-coding downstream 501383 21486532 ~ 21512528 (-)
G87107 nrcam,LOC101067328 non-coding downstream 547665 21462705 ~ 21466246 (-)
G87249 NA non-coding upstream 41885 22070958 ~ 22082538 (-)
G87254 NA non-coding upstream 76807 22105880 ~ 22106255 (-)
G87320 nuak1 non-coding upstream 258871 22287944 ~ 22355196 (-)
G87329 appl2 non-coding upstream 358922 22387995 ~ 22390216 (-)
LOC120563633 NA non-coding upstream 547944 22577017 ~ 22682276 (-)
LOC120564778 LOC103358851,LOC101480430,LOC100706913,LOC102797593 other downstream 274567 21735006 ~ 21739344 (-)
G87140 NA other downstream 300357 21713042 ~ 21713554 (-)
dnajb9a dnajb9,LOC100706374,LOC102775779,LOC102215328 other downstream 641402 21369531 ~ 21372509 (-)
LOC120563850 NA other downstream 1126285 20877668 ~ 20887626 (-)
LOC120564033 LOC103358331,LOC102195670 other downstream 1184676 20806882 ~ 20829235 (-)
LOC120564428 NA other upstream 318097 22347170 ~ 22366978 (-)
parvg parvg other upstream 660088 22689161 ~ 22706296 (-)
LOC120564579 LOC103366737 other upstream 1382437 23411510 ~ 23422457 (-)
G87538 NA other upstream 1465257 23494330 ~ 23498659 (-)
G87624 LOC103358853,LOC104921025 other upstream 1709909 23738982 ~ 23741190 (-)

Expression


Co-expression Network