pstpip1a (pstpip1,LOC102789492)


Basic Information

Item Value
gene id pstpip1a
gene name pstpip1,LOC102789492
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 16835332 ~ 16842414 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807683.1
CTTGCATCGAGCCACAGCCTGTTACACTGCTGGCTGCTTTAAAGTGATTTAAAGTTGAGTGGATTCTCCAACAGGGACTATTGTTAACCACTGCCAAGATGACATTACAATTTAAAGATGCCTTTTGGGGAGTGGACTTCATCAGTAATATTGGGTTTGAGACTATCAGTCAGAGACTTAATGATGGTCGACGGACATGCAAAGACATGGAGGAGCTCCTGAAAATGAGGGCATCAGCAGAGGAGAAATATGGCAAGGAACTGGTCACAATCGCCCGCAAGGCTGGCGGTTTATATGAGATCTGcACTTTGAAATCATCTTttgatgaaatgaaaacacaaATTGAAAACGTAGGAAACTTGCACATTCAGCTTTCTGGATTCCTCAAGGAAGAAGTGAAGAGAATGGAGCAGTTCAGAGAGCgacagaaagaacagagaaaaaAGTTTGAAGTTATCATGGAGAAGGTCCAGAAGATAAAAGTCTCCCTCTACAAGAAAACAATAGAATCTAAAAGATCCTATGAGCAGCGCTGCAGGGAGGCAGATGAGGCAGAACAAAGCGCTGAGAAGATGGGCAATTCTCCCACAGCCACTCCCAAACAGATCGAGAAGatgAACACCAAATCCAAACAGTGCAGAGAAGCTGCAGAGGAGGCTGAGAAACAGTACATGTCAAACATTGAACAACTTGACACAACTCGTCAAGAGTGGGAAtcaacacacatcaacacatgtgAGATATTTCAGCAGCAGGAAGAAGACCGCATCAGCATACTAAGGGATGCTTTGTGGGTGCACTGTAACCATTTGTCTATGCAGAGTGTGAAAGATGATGAGTGTTACGAGGATGTGAGAAAAACACTGGAAAAGTGTGACATCATCGCAGACAACAACTGCTTTGTGGAGATGAAAAGGACTGGCTTGACCCCCTCAGCTCCAGTTGAATACCAAAATTACTATCAGAAGAATGCTACGGAGGACAGAAATGGAAGTGCTGGATTCGTAGGGggagtcatgaaaaaGTTTTCAAGTCTTCTGCAAGGGAACTGTTCCAGTGGCTCCAAACTGAGCATTAATGAACAAGTTACACAACCTACTGCAGCAACATCGGAAGGAGTTTATGCTTCAATTCCTGTATGTCAGGGGTCACAGCTGAGCAGCGAGGGGTACCAGGTCGTGTATGACTATGTGGCACAGGGGGACGATGAGCTCTCTGTGTCAGTCGGGGACGTTGTGGTTGTCATAGATCAAGGTGAGGATGGCTGGTGGACGGTGAAAAGAAATGGCCTTACTGGATTGGTCCCAGGATCTTACCTTGCCAAATAATGAGTCAGCCATAGTCATGTAATATTTTGTAAATGCTTTGTCATTTAAAATTGACTCataattagattagattttaattgtttttatacTTGTTTTGCTACAAAACCTCATTCTGTTAGAATAATTTGAAAGACACTTTTATCACATAATAATCCTACAGATAGAGTCTGTCACATAGGCTACAGTAGCATAAGACTGTTGAATAAATTATTTATTGCTATGGCACATATTCATATTGCTTTGCCCTTACTGCTGGTGTGTTGAGTCCTCCTCATACTCATGACAGCTGGGAGATTAAGTGATCTGTTGCACAAGACCACTGCACTAAGTTTATTAATATACTGTTGTATTGTTTTATATCTGCGGTCCTAAATGTTGTGCAGAACATTTGATTTCTGTTGTTGGCCCGTTTATAAGTTTTATGTATGGTTATTGTTTCTATTCTGAAtgctaaaaataataattatatgtgcatttatttgttatttattcaacatgacagaaaaatgtgttttgtttttgaaacgTTGTTTTCAGCCACCGCTAATTAAGAAAACTATTTGGCATTATTGCTTTATTTTTTCTCGCTATTCTTAATTTGGATTACAAAAGGACCAGACCAGAACAATCCAACAAAGCAGCTGTAATACAACTGGGCACTATTCTTGGGTCATGTTGCTAAGCAATCTGCTCTCTCTGGTTCATTGCCTACCCCCTAACCAAAGCTGAGTCTATTAACTACCATAAGTGTCCACAATGCATGTTTGGTGGTCACAAGATGTTCCAGAAGCAGATACAACTACATCTAGTGATTATTCTAAGAGCTATTTAATATGCATACATGTGTTATGAGTCAATGGGAACCTAGAACCTAGTTTGAAGACATAAAGCTACAAAGCAAAAAATATTAAACCTCCTGGACCTGTTACACCCCTCCCTCATGGTAAACACCTGAACTTTGA
>XM_039807684.1
CTTGCATCGAGCCACAGCCTGTTACACTGCTGGCTGCTTTAAAGTGATTTAAAGTTGAGTGGATTCTCCAACAGGGACTATTGTTAACCACTGCCAAGATGACATTACAATTTAAAGATGCCTTTTGGGGAGTGGACTTCATCAGTAATATTGGGTTTGAGACTATCAGTCAGAGACTTAATGATGGTCGACGGACATGCAAAGACATGGAGGAGCTCCTGAAAATGAGGGCATCAGCAGAGGAGAAATATGGCAAGGAACTGGTCACAATCGCCCGCAAGGCTGGCGGTTTATATGAGATCTGcACTTTGAAATCATCTTttgatgaaatgaaaacacaaATTGAAAACGTAGGAAACTTGCACATTCAGCTTTCTGGATTCCTCAAGGAAGAAGTGAAGAGAATGGAGCAGTTCAGAGAGCgacagaaagaacagagaaaaaAGTTTGAAGTTATCATGGAGAAGGTCCAGAAGATAAAAGTCTCCCTCTACAAGAAAACAATAGAATCTAAAAGATCCTATGAGCAGCGCTGCAGGGAGGCAGATGAGGCAGAACAAAGCGCTGAGAAGATGGGCAATTCTCCCACAGCCACTCCCAAACAGATCGAGAAGatgAACACCAAATCCAAACAGTGCAGAGAAGCTGCAGAGGAGGCTGAGAAACAGTACATGTCAAACATTGAACAACTTGACACAACTCGTCAAGAGTGGGAAtcaacacacatcaacacatgtgAGATATTTCAGCAGCAGGAAGAAGACCGCATCAGCATACTAAGGGATGCTTTGTGGGTGCACTGTAACCATTTGTCTATGCAGAGTGTGAAAGATGATGAGTGTTACGAGGATGTGAGAAAAACACTGGAAAAGTGTGACATCATCGCAGACAACAACTGCTTTGTGGAGATGAAAAGGACTGGCTTGACCCCCTCAGCTCCAGTTGAATACCAAAATTACTATCAGAAGAATGCTACGGAGGACAGAAATGGAAGTGCTGGATTCGTAGGGggagtcatgaaaaaGTTTTCAAGTCTTCTGCAAGGGAACTGTTCCAGTGGCTCCAAACTGAGCATTAATGAACAAGTTACACAACCTACTGCAACATCGGAAGGAGTTTATGCTTCAATTCCTGTATGTCAGGGGTCACAGCTGAGCAGCGAGGGGTACCAGGTCGTGTATGACTATGTGGCACAGGGGGACGATGAGCTCTCTGTGTCAGTCGGGGACGTTGTGGTTGTCATAGATCAAGGTGAGGATGGCTGGTGGACGGTGAAAAGAAATGGCCTTACTGGATTGGTCCCAGGATCTTACCTTGCCAAATAATGAGTCAGCCATAGTCATGTAATATTTTGTAAATGCTTTGTCATTTAAAATTGACTCataattagattagattttaattgtttttatacTTGTTTTGCTACAAAACCTCATTCTGTTAGAATAATTTGAAAGACACTTTTATCACATAATAATCCTACAGATAGAGTCTGTCACATAGGCTACAGTAGCATAAGACTGTTGAATAAATTATTTATTGCTATGGCACATATTCATATTGCTTTGCCCTTACTGCTGGTGTGTTGAGTCCTCCTCATACTCATGACAGCTGGGAGATTAAGTGATCTGTTGCACAAGACCACTGCACTAAGTTTATTAATATACTGTTGTATTGTTTTATATCTGCGGTCCTAAATGTTGTGCAGAACATTTGATTTCTGTTGTTGGCCCGTTTATAAGTTTTATGTATGGTTATTGTTTCTATTCTGAAtgctaaaaataataattatatgtgcatttatttgttatttattcaacatgacagaaaaatgtgttttgtttttgaaacgTTGTTTTCAGCCACCGCTAATTAAGAAAACTATTTGGCATTATTGCTTTATTTTTTCTCGCTATTCTTAATTTGGATTACAAAAGGACCAGACCAGAACAATCCAACAAAGCAGCTGTAATACAACTGGGCACTATTCTTGGGTCATGTTGCTAAGCAATCTGCTCTCTCTGGTTCATTGCCTACCCCCTAACCAAAGCTGAGTCTATTAACTACCATAAGTGTCCACAATGCATGTTTGGTGGTCACAAGATGTTCCAGAAGCAGATACAACTACATCTAGTGATTATTCTAAGAGCTATTTAATATGCATACATGTGTTATGAGTCAATGGGAACCTAGAACCTAGTTTGAAGACATAAAGCTACAAAGCAAAAAATATTAAACCTCCTGGACCTGTTACACCCCTCCCTCATGGTAAACACCTGAACTTTGA

Function

symbol description
pstpip1 Enables identical protein binding activity. Predicted to be involved in actin filament polymerization. Located in membrane. Implicated in PAPA syndrome.

NR:

description
PREDICTED: proline-serine-threonine phosphatase-interacting protein 1 isoform X3

GO: NA

KEGG:

id description
K12804 PSTPIP1; proline-serine-threonine phosphatase interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807683.1 True 2290 mRNA 0.41 15 16835332 16842414
XM_039807684.1 False 2287 mRNA 0.41 15 16835332 16842414

Neighbor

gene id symbol gene type direction distance location
si:dkey-24l11.2 LOC104946603 coding downstream 5168 16820314 ~ 16830164 (-)
slc28a1 slc28a1,LOC108230093,LOC106514348 coding downstream 32010 16792154 ~ 16803322 (-)
malt3 LOC104964024,LOC103357518,LOC102077990 coding downstream 58966 16766929 ~ 16776366 (-)
ankrd34c ankrd34c coding downstream 224429 16607362 ~ 16610903 (-)
idh2 idh2,LOC104917827,LOC105932345,LOC107100590,LOC103147849,LOC103466626 coding downstream 241146 16581508 ~ 16594186 (-)
isl2a isl2,LOC102787860,LOC102305078,LOC101486127,LOC102207021 coding upstream 71123 16913537 ~ 16918273 (-)
tmem266 tmem266 coding upstream 86327 16928741 ~ 16958417 (-)
lactb lactb coding upstream 121063 16963477 ~ 16967097 (-)
tpm1 tpm1,LOC103141214,LOC106946143 coding upstream 126179 16968593 ~ 16981538 (-)
tln2b tln2 coding upstream 151509 16993923 ~ 17075416 (-)
G85441 NA non-coding downstream 19185 16811074 ~ 16816147 (-)
G85436 NA non-coding downstream 25830 16809282 ~ 16809502 (-)
G85428 NA non-coding downstream 47350 16784298 ~ 16787982 (-)
G85373 ctsh non-coding downstream 152444 16680151 ~ 16682888 (-)
G85361 rasgrf1,LOC108230026,LOC106514342,LOC106921433,LOC103147845,LOC101158694 non-coding downstream 179578 16654938 ~ 16655754 (-)
G85453 scaper,LOC102788151,LOC107662441,LOC107688925 non-coding upstream 24713 16867127 ~ 16869163 (-)
G85460 scaper non-coding upstream 55270 16897684 ~ 16899795 (-)
G85462 scaper,LOC102788151 non-coding upstream 58750 16901164 ~ 16902321 (-)
G85481 etfa non-coding upstream 78035 16920449 ~ 16922142 (-)
LOC120563415 NA non-coding upstream 247691 17090105 ~ 17095763 (-)
G85435 NA other downstream 26916 16808056 ~ 16808416 (-)
trnah-gug_10 NA other downstream 70546 16764715 ~ 16764786 (-)
LOC120563869 frmd5,LOC104917831,LOC102299895,LOC106561170 other downstream 71614 16697095 ~ 16763718 (-)
G85321 NA other downstream 394367 16439374 ~ 16440965 (-)
st8sia2 fam174b,st8sia2,LOC100690985,LOC101474125,LOC102798331 other downstream 626146 16188853 ~ 16209186 (-)
fbxl22 fbxl22 other upstream 783597 17626011 ~ 17645520 (-)
ppcdc ppcdc other upstream 1019299 17861713 ~ 17877065 (-)
dennd4a dennd4a other upstream 1051439 17893853 ~ 17956629 (-)
trnaq-cug_6 NA other upstream 1084633 17927047 ~ 17927118 (-)
G85813 rpl4 other upstream 1188594 18031008 ~ 18036276 (-)

Expression


Co-expression Network