LOC120563522


Basic Information

Item Value
gene id LOC120563522
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 20256444 ~ 20257777 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807729.1
GTGAAATGAAAGcagcaaaaaggaaatgtgtatTTGCGTACTCTACATATGACACATAAGCAATAAGTGAGTCTTCCAGGGGTTGAGAAACATGGCCGTTCAGTGAGAATGACAGCAACGGCACTCCACTGAATGTGTCACAAAGGTGTCAGCTGAGGTGCACGCAGCAGAGGGGTGTTCTGTACTGTATGAGGGAGGAGATCGAGCAGAAAGAAATGCATTTCAACAGCACAACTCCCCACATTTCACCCCCAAACCACAAACCTGGATTTCCTGGTTACTATGCACTGATTCCCTTTGTACTACTCATACTGATTGGATGTGTGCTGGCAATGGTTGTTTATATCAGGAGGAAGTCCAGACTAGATGAGCTGCGCCATAGGATGATTCCTCTGTACAGCTACGACGCCGCAGAGGAACAAGAAGAGTGGAAGGACGCTGgcagggaagaggaggagctgaCTGAACCTTTGTATAAGGAGGGAAAGCTCTTGTTTTCATCGGTCTATGGAACATGAACAGAAagtcaagaaagaaaaaataatgtgGCCAATTACAGGAAGATTTCTCCATTTCTATTTTGTGTTGCAGATGCTTTACGAATATAGACTGGActcttattaataaaaacatcatTCAACAGCTACTAGCGCCACATGAAATGATTTAATTTCTTCCCACATGACATGTTCTATGCAGAGCAACAGACAGATGACACTACAGGCTAATCCTCTCTTTTGCCTTAGTTAAGATTTTGTTTAAGACTTTACCAAGTGTTTTGAAGGATACTGCAAGATTGTCATTTTTGAGCAATTACCTGGAAGCTAAAATCCAACTTAAAACCCTTTTTGTTTTGCGTGTGTA
>XM_039807730.1
TCTTTAGCAATAAGTGAGTCTTCCAGGGGTTGAGAAACATGGCCGTTCAGTGAGAATGACAGCAACGGCACTCCACTGAATGTGTCACAAAGGTGTCAGCTGAGGTGCACGCAGCAGAGGGGTGTTCTGTACTGTATGAGGGAGGAGATCGAGCAGAAAGAAATGCATTTCAACAGCACAACTCCCCACATTTCACCCCCAAACCACAAACCTGGATTTCCTGGTTACTATGCACTGATTCCCTTTGTACTACTCATACTGATTGGATGTGTGCTGGCAATGGTTGTTTATATCAGGAGGAAGTCCAGACTAGATGAGCTGCGCCATAGGATGATTCCTCTGTACAGCTACGACGCCGCAGAGGAACAAGAAGAGTGGAAGGACGCTGgcagggaagaggaggagctgaCTGAACCTTTGTATAAGGAGGGAAAGCTCTTGTTTTCATCGGTCTATGGAACATGAACAGAAagtcaagaaagaaaaaataatgtgGCCAATTACAGGAAGATTTCTCCATTTCTATTTTGTGTTGCAGATGCTTTACGAATATAGACTGGActcttattaataaaaacatcatTCAACAGCTACTAGCGCCACATGAAATGATTTAATTTCTTCCCACATGACATGTTCTATGCAGAGCAACAGACAGATGACACTACAGGCTAATCCTCTCTTTTGCCTTAGTTAAGATTTTGTTTAAGACTTTACCAAGTGTTTTGAAGGATACTGCAAGATTGTCATTTTTGAGCAATTACCTGGAAGCTAAAATCCAACTTAAAACCCTTTTTGTTTTGCGTGTGTA

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807729.1 True 864 mRNA 0.42 5 20256444 20257777
XM_039807730.1 False 811 mRNA 0.43 4 20256444 20257547

Neighbor

gene id symbol gene type direction distance location
LOC120563520 NA coding downstream 24 20255366 ~ 20256420 (-)
bncr NA coding downstream 1106 20252799 ~ 20255338 (-)
LOC120564471 LOC104960979,LOC103355225,LOC103150264,LOC103466396,LOC106915861 coding downstream 141060 20088128 ~ 20115384 (-)
si:dkey-29p10.4 NA coding downstream 172844 20075491 ~ 20083600 (-)
LOC120564329 tp53i11 coding downstream 197321 20016169 ~ 20059123 (-)
LOC120563518 plcz1,LOC104942417,LOC106523397,LOC108229959 coding upstream 18100 20275877 ~ 20293118 (-)
LOC120564552 LOC103358309,LOC104963723 coding upstream 332525 20590302 ~ 20596104 (-)
LOC120564551 LOC104940623,LOC103358310,LOC104963698,LOC106523659 coding upstream 346247 20604024 ~ 20610068 (-)
hbp1 hbp1,LOC108230206 coding upstream 417659 20675436 ~ 20686687 (-)
hsp90b1 hsp90b1,LOC102789166 coding upstream 429288 20687065 ~ 20708195 (-)
G86652 reln non-coding downstream 14594 20241433 ~ 20241850 (-)
G86605 NA non-coding downstream 240632 20014338 ~ 20015812 (-)
G86575 lmo2 non-coding downstream 433071 19821540 ~ 19823373 (-)
G86566 NA non-coding downstream 479401 19774307 ~ 19777043 (-)
G86549 NA non-coding downstream 531251 19723973 ~ 19725193 (-)
G86686 NA non-coding upstream 144967 20402744 ~ 20461823 (-)
G86761 NA non-coding upstream 441038 20698815 ~ 20699637 (-)
G86853 NA non-coding upstream 650612 20908389 ~ 20908590 (-)
G86976 NA non-coding upstream 844853 21102630 ~ 21103379 (-)
LOC120563411 NA non-coding upstream 882730 21140507 ~ 21146513 (-)
cep152 cep152,LOC104960117 other downstream 682756 19557452 ~ 19573688 (-)
G86402 LOC103363837 other downstream 867869 19387822 ~ 19388575 (-)
arpp19b arpp19,LOC100693429,LOC102791975,LOC106919339,LOC101065895 other downstream 938966 19315385 ~ 19317478 (-)
LOC120564082 svip other downstream 1095957 19156758 ~ 19160487 (-)
G86194 tph1 other downstream 1245528 19007196 ~ 19010916 (-)
LOC120564033 LOC103358331,LOC102195670 other upstream 549105 20806882 ~ 20829235 (-)
LOC120563850 NA other upstream 619891 20877668 ~ 20887626 (-)
dnajb9a dnajb9,LOC100706374,LOC102775779,LOC102215328 other upstream 1111754 21369531 ~ 21372509 (-)
G87140 NA other upstream 1455265 21713042 ~ 21713554 (-)
LOC120564778 LOC103358851,LOC101480430,LOC100706913,LOC102797593 other upstream 1477229 21735006 ~ 21739344 (-)

Expression


Co-expression Network