idh2 (idh2,LOC104917827,LOC105932345,LOC107100590,LOC103147849,LOC103466626)


Basic Information

Item Value
gene id idh2
gene name idh2,LOC104917827,LOC105932345,LOC107100590,LOC103147849,LOC103466626
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 16581508 ~ 16594186 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807747.1
GAGGAGAAGCTGCAGTTTAAACCCCTATATTTGTCTCGATCTTCCTCTGTCTGTGCGACTCTGACGTAGCAACCAGCGTATCCCGCCGGTGATGTGAAGAAGGGCGGTGCTGCCTGCTTACTGTAGCTATATTTCAGAGAGTCTCATAGCGTTTGCCCCCTCTCTGCTCTGAGTTTCGTCGAGTGTCAGCCTCAAAGTTAATCGGGCCAGGGAAACATGGCTGGATATTTGAAAGTCCTCAACTCTCTTTCGAGATCCGCCGCTGCTTTTTCCAGAAACCCCGCGGTGGTTGCGCCGGCTGCAAACTGCCAGACTTTACAACAAAGAAACTATGCCGACAAACGCATCAAAGTGGCCCAGCCAGTGGTGGAGATGGATGGAGACGAGATGACAAGGATCATCTGGGAGTTCATCAAAGAGAAGCTCATCCTGAACAATGTTGATGTTGAGCTGAAGTATTATGACCTGGGTCTGCCATATCGTGACCAGACTGATGACCAAGTCACCATCGACTCTGCCCTGGCCACTCTGAAGTACAATGTGGCGGTTAAATGTGCAACCATCACACCAGACGAAGCTAGAGTGGAAGAGTTCAGCCTGAAGAAGATGTGGAAGAGCCCCAACGGTACCATCAGGAACATTCTGGGCGGCACCGTCTTCCGTGAGCCAATCATCTGCAACAACATTCCCAGGCTTGTTACAGGCTGGACGCAGCCCATCACCATCGGCAGACACGCGTTCGGTGATCAGTACAGAGCAACAGACTTTGTTGTGGACCAACCCGGGAAATTCAAGATGATCTTCTCACCTGCTGATGGTAGTGCAGGCAAGGAGTGGGAGGTCTATGACTTTCCTGCTGGTGGCTGTGGAATGGGCATGTACAACACAGATGAGTCGATCACAGGCTTTGCCCACAGCTGCTTCCAGTATGCTATTGGCAAGAAGTGGCCCCTGTACATGAGCACAAAGAACACCATTCTTAAAGCCTATGATGGCAGATTTAAAGACATCTTCCAGGATATCTTTGAAAAGCACTACAAGCCCGAGTTTGACAAACTGAAGATCTGGTATGAGCACAGGCTTATTGATGATATGGTCGCCCAAGTGCTGAAGTCTTCTGGAGCCTTTGTGTGGGCTTGCAAGAACTATGACGGAGATGTTCAGTCCGATATCCTCGCACAGGGTTTTGGCTCTCTGGGATTGATGACATCAGTACTCGTGTGCCCTGACGGAAAGACTATCGAGGCTGAGGCCGCTCACGGCACTGTGACCAGGCACTATCGCGAGCACCAGAAGGGAAGGCCGACCAGCACCAACCCCATTGCCAGCATTTTTGCCTGGACGAGAGGCCTGGAGCATCGTGGCAAACTTGACGGGAACCCCGACCTTATCAAgTTCTCCCAGACTCTGGAGAGGGTGTGTGTCGAGACTGTTGAGAGCGGTACGATGACCAAGGACCTCGCAGGCTGCATCCACGGCCTGTCCAATGTCAAGCTGAACGAGCACTACGTCAATACCACCGACTTCCTCGACGCCATCAAGACAAATCTGGATAAAGCCCTCGGCAAGTAACGGACTTGAAAGTATATAGTTAGCCTGGAGATGGCAATGTCACTCATCGGTTTTTGTACCTCATTTTTAACTTAAAAGGTCAATAAATCAACTTGCATTTTGTCTGAAGGAAACAATACTGTCTATAAGATTATGTAGTATTCTTTTAGAATATTAAAATAGTTGAGAACTGTGCTTCCACCTGATGCCTCCCTAACTATCTGTTCCACTTTTTGcaaggttttatttttgtaatgtgAAGTACTGTATTCGATACTGTGTAATGCCTTGAGCAGGACTGAAGCCCATGTCAAACATATTTGACAATAAATCCCGTGTTTGACCCACTA

Function

symbol description
idh2 Predicted to enable NAD binding activity; isocitrate dehydrogenase (NADP+) activity; and magnesium ion binding activity. Predicted to act upstream of or within glyoxylate cycle; isocitrate metabolic process; and tricarboxylic acid cycle. Is expressed in several structures, including blastoderm; brain; digestive system; pectoral fin bud; and renal system. Human ortholog(s) of this gene implicated in D-2-hydroxyglutaric aciduria 2; acute myeloid leukemia; hepatocellular clear cell carcinoma; intrahepatic cholangiocarcinoma; and lung cancer. Orthologous to human IDH2 (isocitrate dehydrogenase (NADP(+)) 2).

NR:

description
isocitrate dehydrogenase [NADP], mitochondrial

GO: NA

KEGG:

id description
K00031 IDH1, IDH2, icd; isocitrate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807747.1 True 1901 mRNA 0.49 11 16581508 16594186

Neighbor

gene id symbol gene type direction distance location
sema4ba sema4b,LOC103368553,LOC100693140,LOC101470126 coding downstream 32484 16462555 ~ 16549024 (-)
LOC120563779 NA coding downstream 49067 16529442 ~ 16532441 (-)
zgc:162879 LOC104964034,LOC103368560,LOC100692867 coding downstream 120276 16452033 ~ 16461232 (-)
LOC120563512 LOC104964038,LOC103375536,LOC102794895 coding downstream 172065 16380943 ~ 16409443 (-)
slco3a1 slco3a1 coding downstream 327420 16213775 ~ 16254088 (-)
ankrd34c ankrd34c coding upstream 13176 16607362 ~ 16610903 (-)
malt3 LOC104964024,LOC103357518,LOC102077990 coding upstream 172743 16766929 ~ 16776366 (-)
slc28a1 slc28a1,LOC108230093,LOC106514348 coding upstream 197968 16792154 ~ 16803322 (-)
si:dkey-24l11.2 LOC104946603 coding upstream 226128 16820314 ~ 16830164 (-)
pstpip1a pstpip1,LOC102789492 coding upstream 241146 16835332 ~ 16842414 (-)
G85332 NA non-coding downstream 26697 16554036 ~ 16554811 (-)
G85331 NA non-coding downstream 27875 16553406 ~ 16553633 (-)
G85328 NA non-coding downstream 52659 16528607 ~ 16528849 (-)
G85319 NA non-coding downstream 118990 16461562 ~ 16462518 (-)
G85312 NA non-coding downstream 208589 16371001 ~ 16372919 (-)
G85353 NA non-coding upstream 32545 16626731 ~ 16626949 (-)
LOC120564211 NA non-coding upstream 55655 16649841 ~ 16659316 (-)
G85361 rasgrf1,LOC108230026,LOC106514342,LOC106921433,LOC103147845,LOC101158694 non-coding upstream 60752 16654938 ~ 16655754 (-)
G85373 ctsh non-coding upstream 85965 16680151 ~ 16682888 (-)
G85428 NA non-coding upstream 190112 16784298 ~ 16787982 (-)
G85321 NA other downstream 140543 16439374 ~ 16440965 (-)
st8sia2 fam174b,st8sia2,LOC100690985,LOC101474125,LOC102798331 other downstream 372322 16188853 ~ 16209186 (-)
chd2 chd2 other downstream 394172 16155984 ~ 16187336 (-)
G85133 mef2a,mef2aa,LOC107553916 other downstream 1037426 15514778 ~ 15544082 (-)
ttc23 LOC104957250 other downstream 1097363 15472934 ~ 15484145 (-)
LOC120563869 frmd5,LOC104917831,LOC102299895,LOC106561170 other upstream 102909 16697095 ~ 16763718 (-)
trnah-gug_10 NA other upstream 170529 16764715 ~ 16764786 (-)
G85435 NA other upstream 213870 16808056 ~ 16808416 (-)
fbxl22 fbxl22 other upstream 1031825 17626011 ~ 17645520 (-)
ppcdc ppcdc other upstream 1267527 17861713 ~ 17877065 (-)

Expression


Co-expression Network