LOC120563572


Basic Information

Item Value
gene id LOC120563572
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 1181506 ~ 1194264 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807811.1
GGGTGTTCCAGGTACATGAGAACAACCCTGAAACCAAAAGAGTTCAGTCAGCTGAGTCTCCGTTTAGAGAGGACcgaacagaggaggaggagggaactCGAGGCCGAGGCACGACTGACTTCAGATCAGAAGATGAGTGATCatgtggaggaagaggaggatggagcAGAGTCTGTAGTATCCGGCTGTCTGTCTATGAAGAGCGACTGGTCCAAAGGTTTTTCTCAAGACTTCAGGAAtcaacctggaccctcagacacaaaagagaagaggagtgaTGTTCCTGTTGAGGAGCtgcagacagccaatcagagcagctcTGTACAAATGATTTGTGTTCGGCATGAACATAAGATCATTATGAAGAGGACATGTGAACGTGTGACTGAAGGAAGTgatcaaacaggaagtgaaagCCTCCTCAACAGGATCTACACTGCGCTCTACATCGCAGAGGAACAGAGTGACGACGTTAATACCCAACATGAGGTGAGGCAGCTCGAGACAGCTTCAAAGATGGAGACCCTCCATGACTCTCCAATCAAGTGCAGCGACATCTTTAAAGCCTTACCTGaccaacagaaacacatcagaGTCGTTATGATGATAGGCGTCGCTGGCGTTGGAAAAACCTTCTCAGTTCAGAAGTTCTGTCTGGACTGGGCCGAGGGTTTGGAAAACCAAGATGTGGATCTGGTGATTCCTCTTTCCTTCAGGGAGCTGAACTTGATCAAAGATGAGCAGTACAGTCTTCTGGAGCTGCTCCGTGTTTTCCATCCATCATTACAGGAGGTCCCAGCAGAGCAGCTCGCTGGCTCTAAAGTTCTCTTCATCTTTGACGGCCTGGATGAAAGCAGACTTTACCTGGATTTCAACAACAATGAGGCTGTTTCTGATGTCACACAGAAGTCATCAGTCAACGTGCTGTTGACAAACCTCATCCAGGGGAAGCTGCTTCCCTCGGCTCTCGTCTGGATAACTtcccgacctgcagcagccaatcagatccctcctgcgtGTGTTGACAGGGTAACAGAAGTACAAGGCTTCACTGACgcccagaaggaggagtacttcaggaagagagtcagtgatgaagatctgtccagcagaatcatctcccacatcaagacattcAGGAGCCTCCACAACATGTGTctgatcccagtcttctgctggatcactgctacagttgtGGACCACATGTTGACTACAGACCagagaggagagctgcccaagaccctgactgacatgtactcacacttcctgctggttcagacaaagaggaagaagctCAAGTACGCTGAGGGACATGAGACGAGTCCACAGGAGCTGACGGAGGCTGACAGGGAAGTTCTTCTGAAGCTGGGGAGGCTGGCATTTGAACAGCTGGAGAAAGGAAACATCATGTTCTACCAAGAAGACCTGGAGCGCTGTGGTCTGGATGTCACAGAGGCCTCGCTGTACTCAGGAGTTTGTTCAGAGATCTTCAAAAGAGAGAGTGGGATCTTCCAGAAAACAGTCTACTGCTTTGTTCATCTGagcgttcaggagtttctggctgcagtctacctgttccactgttacaccaacaggaacacacaggtaCTGGAGGACTTCCTGGGAGAAGACTGGGACCGGGACTTGACCTGGAACTATAAAAACAGTGGTCCATCCCTGGATGATTTCCTGAAGAAAGTCATTGAGAAATCTCTTGAAAGTAAAAATGGTCACCTGGACCTGTTTGTCCGCTTCCTAAATGGCCTCTCTCTAGAGTCCAACCAGAAACTCTTAGGAGGCctgctgggtcagacagacaacagtccAGAAATCATCCAGAGAGCCACCAACAACCTGAAGATGATGAACAGTGATGAGATCTCTCCTGACAGAAGCATCAACATCTTCCACTGTCTGACGGAGCTGAACGACTGCTCAGTCCATCTGGAGATCCAAAAGTTCCTGAAGTCAGAGAACAGAGGGTGGAAGAGACTCTCTGGGATCCAGTGCTCAGCTCTAGCCTACATGCTGCAGATGTCAGAGGAGGTTCTGGATGAGTTGGATCTGTACAAGTACAACACATCACCACTAGGACAACggagactgattccagctgtgaGGAACTGCAGAAAGGCTCGactTACTAACTGTGGACTCTCGGAGACTCACTGTGAAGTTGTCgcctcagctctgaagtccaacccctcccatctgagtgAGCTGGACCTGAGTTACAActacctgcaggattcaggagtgaagctttTGTCTGCCGCATTGGAGGATCCACACTGTAAACTGGAGATTCTGAGattgaatgcctgcaggttgtcagagatcagctgtgcttctctggcctcagctctgaaaTCCAACCCCTctcatctgagagagctggagctGAGTATCAACaagctgcaggattcaggagtgaagctgctgtgtGCTTTTCTGATGAGTCCCTgctgtagactggagactctgagattgatgaactgcagtttgtcagagatcagctgtgctgctctggcctcagctctgaagtccaacccctgccatctgagagagctggatctgagtgacaacaacctgcaggattcagatGTGACACTGCTGTCAGATCTTGTGAAGAATCCACACTGTAGTCTGAAGACTTTGCTGTGGAGGTGAAGGTTTTACTAAGAGTGATCAGAAAGGTGGAGCTGTTGAGAGCATAAGCTGAGTCCAGATGATCCAGAGAGCAGCTCTGACTGAACCTTGTTACTGGGATGACTCGCAGTGCTGCAGCCTGAGCTGCTCTGAGATGAGCTCCGCTGTCAGACACAATGTGGAGTCCATCATCATCCCTGTGTGTTCCTCTGATCCATCTCCACAGTCTCTGCAGACACACCGAGGCCCAATCCCAATCTCCACCCTGAGACCTTAAACCCTGATCCCTCACTACTTTTACTGAGGTCACCTGGTAAGTGACGGAGAGCGAGAGGCTGCGAGGGCTCCATGTGGTTTACACAGGACTGGGACAGAACTTTACCTTGACCACAACAAAACCTGTTAGGTACAACTGTGGGTTTGGGACTTTTTATTGTACTTTTATTGTACTTCATAGCCAAGGAAGACTTGAACGTCTAACACATGAATTATactagacgcatccaaggtggcgcgcgccatcgtgacgtcaaaatgacgtaataTCCTGCTGTTGCGCCCGGATTTATGGCGCGCGAGCCGAGGTTGCGCACGGCTCtctttttttcagcggcgcgcgacaaagcggaaacaggaggcctgaacgagttcgccgacaacgtgatgccaggactctcagagtgacaaGTGCAAGTCTCTCCTGTAAACTTCCTGGgttaaaattcaattcaattcaattttatttatagtatcaaatcataacacgagttatctcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807811.1 True 3425 mRNA 0.49 8 1181506 1194264

Neighbor

gene id symbol gene type direction distance location
si:ch211-59o9.10 NA coding downstream 3636 1152252 ~ 1177870 (-)
LOC120563352 LOC102080071,LOC102210666,LOC102302880,LOC101466024 coding downstream 92833 1068789 ~ 1088673 (-)
LOC120564813 NA coding downstream 199143 982236 ~ 982363 (-)
LOC120564812 NA coding downstream 204498 976881 ~ 977008 (-)
LOC120564811 NA coding downstream 206973 974406 ~ 974533 (-)
sycp3 sycp3 coding upstream 1659 1195923 ~ 1203372 (-)
zgc:101783 NA coding upstream 55533 1249797 ~ 1264054 (-)
LOC120563569 NA coding upstream 249363 1443627 ~ 1452280 (-)
chrm4b NA coding upstream 497105 1691369 ~ 1703414 (-)
nox5 nox5 coding upstream 595286 1789550 ~ 1859958 (-)
G81464 NA non-coding downstream 18839 1099698 ~ 1162667 (-)
G81475 NA non-coding downstream 48841 1129925 ~ 1132665 (-)
G81476 NA non-coding downstream 61266 1118308 ~ 1120240 (-)
G81459 NA non-coding downstream 114593 1065446 ~ 1066913 (-)
G81457 NA non-coding downstream 116669 1064530 ~ 1064837 (-)
G81499 NA non-coding upstream 42466 1236730 ~ 1237745 (-)
G81478 NA non-coding upstream 51759 1246023 ~ 1256519 (-)
G81496 NA non-coding upstream 52122 1246386 ~ 1301755 (-)
G81502 NA non-coding upstream 62505 1256769 ~ 1257934 (-)
G81526 NA non-coding upstream 192392 1386656 ~ 1408756 (-)
G81445 NA other downstream 135994 1004039 ~ 1045512 (-)
glsl NA other downstream 246162 806744 ~ 935344 (-)
LOC120563708 LOC106561532 other downstream 349762 719054 ~ 831744 (-)
LOC120563709 LOC103365992,LOC102289231 other downstream 381782 726856 ~ 799724 (-)
G81085 NA other downstream 619227 561663 ~ 562279 (-)
actr6 actr6 other upstream 10530 1204794 ~ 1235228 (-)
ambra1b ambra1 other upstream 52672 1246936 ~ 1768910 (-)
LOC120563578 LOC108241855,LOC108242154,LOC107380983 other upstream 151981 1346245 ~ 1374380 (-)
G81535 NA other upstream 276564 1470828 ~ 1472927 (-)
kcnj11l LOC103374924,LOC108251025,LOC106531031,LOC103466804,LOC106904500,LOC103148617,LOC102236473,LOC100711429,LOC101469628,LOC102296518,LOC102199411 other upstream 343875 1538139 ~ 1548184 (-)

Expression


Co-expression Network