ccdc34


Basic Information

Item Value
gene id ccdc34
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 26990622 ~ 26994899 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807831.1
GGGGGCGTGGTGTAtcatgggaaaaaaaagttgtttgcaAATCAGTTCCAGCGTTGGTAAAACAAGAACGAGCACAACAGCGAGACTTTTCTTCACATTTACGTACAAAGACATCCGCTAGCAATGTCTGGAGGAAGGATGCCCAACTGTCCTGCCTCTGCGTCCCAGGGCTTTAGCTCGACCCCTGTCAAAACAAGCCAGGGAAAGGACTTGCACACATCCAAGGGCTTGGACGACGGCATCTTATCCGACGACGAAGACACGTTTTCTCTGCTTTCTCCCATCTATCATGACAGTTTTGACAGCGATGAAGACCTGGAGCCCAGCCCAGCCCAGCAGACTTCACCCAGGCAGAGAGACAACTCCAGCCTCAGTGTTTCACCAGTCAGATGTGAGCTACCAAGAACACCGTCAGTGCAGATGTTGCATGCAGCTAGGGAGCCTGCAGGCTCACCTACTCTCAGTGCATGGGAAATGTGGCTGGTGAACAAAGCCAAGGAAGACCGTTTCAAATTGGAAAAACAAGCAGAGGAGGAGCGGTTacggaaggaaaaaaaagaacaacaagaaAGGGAGCGGGAACAGAAAAAGATTATCATGGAAGAAAAGATCCAAGAATGGCTcaggattaaaaaacaacagGAGAAGCACGAGCAACTTGTAAAACTGagcaaagaggaggaggagatacaGCGACAGCGGGAGAAACAGACCGAGATTGAACTGAAAGCTCAACAAAAGTATAAAGACTGGCTGCAAAAGAAGAATCAAGAAAAAATAGAAatggaaaagaaggaaaaggAGAAAGCTGTCCTGAAGGAGGAGCAGGAGAAAGAGCGCCACAAGAGGGCAGAGGAGAAGTTTAAAGAGTGGCTGGCAAAAGCCAATGAAAAAAGCAGAGCGAGTCCAAAATCACCTTGCTACCCAACAAgtCCCTATGACAAATCCTACCCATCACCCAGCTTCTGCAATCCAATCCCCTGGAAGCCTATTCATGTCCCTCCTCCAGAAACCTCACTGAATAAGACACCTGTCAAGAAAACAACGAACATTTCAACAAACCAACAACGGAAATGTCAACAAAGCCCCAGCACCGCTTTTAGACTGAGAAACTCTGCGAGGACAGCACAGTTGCTGCAGAAGAGATGACAAAGCAGGCCGACATCTATGACTGATATGGTAGCTTAGTTACGGCTCAAATATGATTTCATCACCGCTCATCCACTCCACCACAGCTCCTAAACTGACACTCTGCCAAACCACAGAATCATTTCTGTTCTAATTCTCTATCTACATTTTGGTTTGTTATATGTAGTACACTGGAGTGATTTAGTAATAATGCAGTAGCTCAAATTAGTTTGTACCTAAGGATGTCTGAATGTGTGGGATTTTTACATGATTTTACAAAGATGTTTATAATTTTTATAGACATTTAAGAGCCTTGCGTTTATTTCGTTTTATGAAAATCGTTTTATCCTGTAAATTTGCTTATTAGATAAAAGAGGCATCATCAAAGTTCTTT
>XM_039807832.1
aaaaaaagttgtttgcaAATCAGTTCCAGCGTTGGTAAAACAAGAACGAGCACAACAGCGAGACTTTTCTTCACATTTACGTACAAAGTAGACATCCGCTAGCAATGTCTGGAGGAAGGATGCCCAACTGTCCTGCCTCTGCGTCCCAGGGCTTTAGCTCGACCCCTGTCAAAACAAGCCAGGGAAAGGACTTGCACACATCCAAGGGCTTGGACGACGGCATCTTATCCGACGACGAAGACACGTTTTCTCTGCTTTCTCCCATCTATCATGACAGTTTTGACAGCGATGAAGACCTGGAGCCCAGCCCAGCCCAGCAGACTTCACCCAGGCAGAGAGACAACTCCAGCCTCAGTGTTTCACCAGTCAGATGTGAGCTACCAAGAACACCGTCAGTGCAGATGTTGCATGCAGCTAGGGAGCCTGCAGGCTCACCTACTCTCAGTGCATGGGAAATGTGGCTGGTGAACAAAGCCAAGGAAGACCGTTTCAAATTGGAAAAACAAGCAGAGGAGGAGCGGTTacggaaggaaaaaaaagaacaacaagaaAGGGAGCGGGAACAGAAAAAGATTATCATGGAAGAAAAGATCCAAGAATGGCTcaggattaaaaaacaacagGAGAAGCACGAGCAACTTGTAAAACTGagcaaagaggaggaggagatacaGCGACAGCGGGAGAAACAGACCGAGATTGAACTGAAAGCTCAACAAAAGTATAAAGACTGGCTGCAAAAGAAGAATCAAGAAAAAATAGAAatggaaaagaaggaaaaggAGAAAGCTGTCCTGAAGGAGGAGCAGGAGAAAGAGCGCCACAAGAGGGCAGAGGAGAAGTTTAAAGAGTGGCTGGCAAAAGCCAATGAAAAAAGCAGAGCGAGTCCAAAATCACCTTGCTACCCAACAAgtCCCTATGACAAATCCTACCCATCACCCAGCTTCTGCAATCCAATCCCCTGGAAGCCTATTCATGTCCCTCCTCCAGAAACCTCACTGAATAAGACACCTGTCAAGAAAACAACGAACATTTCAACAAACCAACAACGGAAATGTCAACAAAGCCCCAGCACCGCTTTTAGACTGAGAAACTCTGCGAGGACAGCACAGTTGCTGCAGAAGAGATGACAAAGCAGGCCGACATCTATGACTGATATGGTAGCTTAGTTACGGCTCAAATATGATTTCATCACCGCTCATCCACTCCACCACAGCTCCTAAACTGACACTCTGCCAAACCACAGAATCATTTCTGTTCTAATTCTCTATCTACATTTTGGTTTGTTATATGTAGTACACTGGAGTGATTTAGTAATAATGCAGTAGCTCAAATTAGTTTGTACCTAAGGATGTCTGAATGTGTGGGATTTTTACATGATTTTACAAAGATGTTTATAATTTTTATAGACATTTAAGAGCCTTGCGTTTATTTCGTTTTATGAAAATCGTTTTATCCTGTAAATTTGCTTATTAGATAAAAGAGGCATCATCAAAGTTCTTT

Function

GO: NA

KEGG:

id description
ko03410 Base excision repair
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807831.1 True 1522 mRNA 0.44 7 26990622 26994899
XM_039807832.1 False 1503 mRNA 0.44 7 26990622 26994877

Neighbor

gene id symbol gene type direction distance location
LOC120563586 LOC103361099,LOC106096430,LOC104935510,LOC102796586 coding downstream 209 26986190 ~ 26990413 (-)
ush1c ush1c,LOC106561052 coding downstream 19756 26940304 ~ 26970866 (-)
abcc8 abcc8 coding downstream 52247 26868886 ~ 26938375 (-)
kcnj11 kcnj11 coding downstream 121865 26865059 ~ 26868757 (-)
osbpl5 osbpl5,LOC104951242 coding downstream 338511 26587150 ~ 26652111 (-)
LOC120564006 NA coding upstream 9344 27004243 ~ 27008779 (-)
LOC120564007 NA coding upstream 15074 27009973 ~ 27013068 (-)
agbl2 agbl2,LOC103361125 coding upstream 23798 27018697 ~ 27033599 (-)
fnbp4 fnbp4 coding upstream 39150 27034049 ~ 27043873 (-)
lrrc10 lrrc10 coding upstream 54273 27049172 ~ 27050827 (-)
G88209 mob2 non-coding downstream 126818 26862778 ~ 26863804 (-)
G88170 NA non-coding downstream 196854 26793513 ~ 26793768 (-)
G88163 NA non-coding downstream 219230 26770410 ~ 26771392 (-)
G88106 NA non-coding downstream 440936 26547774 ~ 26549686 (-)
G88101 nap1l4,LOC103366050 non-coding downstream 448610 26537908 ~ 26542012 (-)
LOC120563588 slc15a5 non-coding upstream 6042 27000941 ~ 27001458 (-)
G88245 NA non-coding upstream 8055 27002954 ~ 27004185 (-)
G88272 cnot2,LOC104938479 non-coding upstream 60771 27055670 ~ 27056932 (-)
G88274 NA non-coding upstream 65653 27060552 ~ 27061136 (-)
G88305 NA non-coding upstream 175089 27169988 ~ 27170267 (-)
ptprjb.1 NA other downstream 298378 26653636 ~ 26692244 (-)
phrf1 NA other downstream 1343622 25630776 ~ 25647000 (-)
G87897 NA other downstream 1393861 25596353 ~ 25596761 (-)
G87803 NA other downstream 1925134 25064752 ~ 25065488 (-)
LOC120563922 NA other downstream 3074420 23909169 ~ 23916202 (-)
G88249 mthfs other upstream 18338 27013237 ~ 27014411 (-)
zgc:153031 LOC100703984,LOC102237950,LOC106523206,LOC105917737 other upstream 229063 27223962 ~ 27229372 (-)
G88379 panx2 other upstream 360073 27354972 ~ 27355776 (-)
LOC120564276 LOC103371718,LOC104949276,LOC102797857,LOC100696892 other upstream 629091 27623990 ~ 27650062 (-)
LOC120564781 NA other upstream 817346 27812245 ~ 27824961 (-)

Expression


Co-expression Network