yars2 (yars2,LOC102786810)


Basic Information

Item Value
gene id yars2
gene name yars2,LOC102786810
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 23150719 ~ 23156968 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807846.1
TCCTGATTCTCAACTCCTCCTCGTTCGTGTTCTTGACACAGTCCAACATGGCTGCGTCCATGGCGAGGACCTGCCGTTATTTATCGCGGCATGGATCCTGTATTCTGCCTAGGCGAGCAAACGTGTGTTTCACACTCCGGTCTAAATTCCACTGTTCTGCACCTGCACATAACGGGCTTCTGTTTTCTCTAAATAAACGCGGTATTCTGAAGGACTCTTTCCCAGAAGACGCAGCGCAGGACCGGCTCCCTCGGTTGCTCAAGTCCGGCGCCCAGACTGTATACTGCGGCTTCGACCCTACGGCCGACAGCCTCCACGTGGGCAACTTGCTCGCTATCATCGGTCTGCTGCACTTCCGAAGCGCCGGGCACCATGTCCTCGCTGTGCTCGGAGGGGCCACGGCACAAATCGGAGACCCGAGCGGGAAAACGAGCGAGAGGGAGCGGTTGTCCGCGGACGCTGTCGAGGCGAACACACGCAGCATCCGGGAGAGCATTCACAGGATTTTCACCAACCACGAACTGCACTTTCAGGACGGTTCTAGGAAGATGGGCACCGTGACTGTACTGAACAACCTGAGCTGGTACAAGGACTGGGGCGTGGTGGGGTTTCTGTCGGAGGCGGGAAGGCACTTCAGGATGGGCACCATGCTCAGCCGCCACAGCGTGCAGTCCAGGCTGAAGGGCGCAGACGGAATGAGCCTGACAGAGTTCACCTACCAGGTGTTCCAAGCTTACGACTTCCACCACCTGAACCAAATATACGGCTGCAAGATTCAGCTCGGGGGCACCGACCAGCTGGGAAATGTGATGTCTGGCCATGAGTACATTCACAAAGTGAGCGGTGAGGAGGTGTACGGCCTCACCATCCCGTTGGTGACCAGCTCTGTGGGGGACAAGCTCGGGAAGACGGCCGGCAATGCGGTGTGGCTCAACAGAGACAAAACGTCTCCCTTTGAACTCTACCAGTTCTTTCTCAGGCAGCCTGACGCCAGCGTGGAAGGGCACCTGAAGCTGTTCACCTTCCTGCCTCTGGCGGAGGTGGAGAGGCTGATGGAGCAGCAGAGAGCGGATCCAGGGAAACGCCTCGCACATAAACGGCTGGCCGCAGAGGTGACAAAACTGGTGCATGGGAAGGAGGGCCTCGAGAGTGCTAAAAGATGTACCAACGCACTGTATCACAGCAGCGTGCAGGCCTTGGAGGAAATGAGTGACGAGGAGCTTCAGGAGCTCTTCAGGGAGGCTCCCTTCCATGAGCTGCTGTTGGAGCCGGGTACCACTGTGATAGACGCCTGTCGCCGGGTCAGCGCCATCCCCGAGGGACCCAGAGGGTATCAAATGGTTTTGGAGGGAGCCGTATGGATCAACCACAGGCGGACTGACAATCCAGAGCAGGTGCTGATCCCCAAACTCCATATCCTATCGAATGGACTTACCTTGTTCAGAGTGGGCAAAAGGAACTTTTACATCATCAAGTGGCTCAGTCTCTGAGGCTGTCTGCTCTCGCAAGGGACCAGTCTGACCAGTATGATGGACTGACTGGGATGGTAGGCAACTACACCTTTTGCAGGATCAGTGAGGAGATGTGGATGGACTGATACTTTGGAACGTACTGGGTTTTTGGCATAGCCTTAAGTCGCCTGTGGTTGTCctataaatatgtatatgtacagaTGTGAAGTTTATCTAAAGTTATGGTATTAAAAGGTCTTTGATATAAA

Function

symbol description
yars2 Predicted to enable tyrosine-tRNA ligase activity. Predicted to be involved in tRNA aminoacylation. Predicted to act upstream of or within tyrosyl-tRNA aminoacylation. Predicted to be active in cytosol and mitochondrion. Human ortholog(s) of this gene implicated in myopathy, lactic acidosis, and sideroblastic anemia 2. Orthologous to human YARS2 (tyrosyl-tRNA synthetase 2).

NR:

description
PREDICTED: tyrosine--tRNA ligase, mitochondrial

GO:

id name namespace
GO:0006437 tyrosyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004831 tyrosine-tRNA ligase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K01866 YARS, tyrS; tyrosyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807846.1 True 1720 mRNA 0.55 5 23150719 23156968

Neighbor

gene id symbol gene type direction distance location
cdkn1bb cdkn1b coding downstream 2416 23144257 ~ 23148303 (-)
mrps35 mrps35,LOC102787710 coding downstream 207243 22934142 ~ 22943476 (-)
adck2 adck2 coding downstream 306956 22837978 ~ 22843763 (-)
pus7 pus7 coding downstream 392729 22746489 ~ 22757990 (-)
aplnr2 NA coding downstream 410941 22736375 ~ 22739778 (-)
pparab LOC104921011,LOC103371465 coding upstream 4182 23161150 ~ 23191431 (-)
fbln1 fbln1,LOC104955511,LOC103380317 coding upstream 219613 23376581 ~ 23407669 (-)
ppm1h ppm1h coding upstream 346829 23503797 ~ 23537525 (-)
avpr1aa LOC103358863,LOC100711102 coding upstream 394885 23551853 ~ 23556076 (-)
LOC120563353 NA coding upstream 420610 23577578 ~ 23584567 (-)
G87464 NA non-coding downstream 1375 23149119 ~ 23149344 (-)
G87400 NA non-coding downstream 312853 22761185 ~ 22837866 (-)
LOC120563633 NA non-coding downstream 468443 22577017 ~ 22682276 (-)
G87329 appl2 non-coding downstream 760503 22387995 ~ 22390216 (-)
G87320 nuak1 non-coding downstream 795523 22287944 ~ 22355196 (-)
LOC120563856 NA non-coding upstream 41604 23198572 ~ 23224641 (-)
G87469 NA non-coding upstream 74270 23231238 ~ 23238532 (-)
G87596 ankrd26 non-coding upstream 472758 23629726 ~ 23630285 (-)
G87614 bmt2 non-coding upstream 523780 23680748 ~ 23737505 (-)
G87695 NA non-coding upstream 880916 24037884 ~ 24039901 (-)
parvg parvg other downstream 444423 22689161 ~ 22706296 (-)
LOC120564428 NA other downstream 783741 22347170 ~ 22366978 (-)
LOC120564778 LOC103358851,LOC101480430,LOC100706913,LOC102797593 other downstream 1411375 21735006 ~ 21739344 (-)
G87140 NA other downstream 1437165 21713042 ~ 21713554 (-)
dnajb9a dnajb9,LOC100706374,LOC102775779,LOC102215328 other downstream 1778210 21369531 ~ 21372509 (-)
LOC120564579 LOC103366737 other upstream 254542 23411510 ~ 23422457 (-)
G87538 NA other upstream 337362 23494330 ~ 23498659 (-)
G87624 LOC103358853,LOC104921025 other upstream 582014 23738982 ~ 23741190 (-)
LOC120563922 NA other upstream 752201 23909169 ~ 23916202 (-)
G87803 NA other upstream 1907784 25064752 ~ 25065488 (-)

Expression


Co-expression Network