LOC120563596 (LOC794378,LOC106676715)


Basic Information

Item Value
gene id LOC120563596
gene name LOC794378,LOC106676715
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 13517683 ~ 13520737 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807855.1
ttccagtgtggccctttgtgaaaatgagtttgacaccccgggcttagatcattaaaatagggcccttaatgttAATAGCCTGAAATTCATATTTGTAGAAGAGGCAAGAATGCTATTACATTCAAAACCTTTGCTTTTGCAGGAGAGCTGTAAGTAAAGCAACGAAGGAGTTTCATGCCTTTGGGATTGTGTCGCTCTTCCCATTTTTGAAAGACCCATACTCAAAAAAGGGATATGAACATTTCTATGACATGCAGAGCAACAAAGGCTTTCTTGAGTGGCGTATAAAAACTGTGCAGCGTCAATCCAAAACCTCATCTGCATCCCGTAACAGAGTGGAGCTGAAAGGAGGTCCCACATCGTCAAGAACATCTGGATCCATAGATGACCAGCAAACAGGAGATGAATGTATGGAGGCCATGTCTCTTCTTCACCACATTACTGACCGTGACTTTGTCTTCCAGAAGATGAAAGAAACATTCCATTATCGGCAAAAGGTGCTCCATGACCCACAGCAATCGGCAGACATACTTCAAATGTTTCCTCGTTTCTTGGACACTAAGGGACTGATTTTGCAAGACTTCTTGATGATGTTTGGAGCAGAGACTGCATCCAGGTTCCTGGAAAAATGGAACACCAGTTTTAAAGACAAAGTAATTCAAGAGGCCAGGACCCTCAGAGAGACGTCTCTCCTGaaaaaacagctgaaatctGCCCTGAATGAAGAATCTGACACTGCTGATGAGCCAGAGTGGGACAGCGACATGGCATCTCTTCTTGTATTGCTCCATCTGCTAACTCCTCAACCAGCTGGAAGGAAGCGGCCCAAAAAGATCAGTGTTGGAGAGGCAACTGATCATTTGGTTAAATTTCACAAGTCTTGCCACAGCCTTGAAGAACATCTCATGACGATCGAAGGAAACCCCCAGCCGTATCTGCTGGCCACGGGGACTTCAAAAGCACAGGTTTTCACCTTCTACATAGTCTTGGATAGAAAGCTTCTTCCATGTCAGTCTTCTACATCTCTGGGTGCATTTGATGAGCTGTTCAAGTCCCATTTTGTTTTCAGTGTGCAATATGATGATGCTCTGTCGAGCTTGTACAGATTCCTGCAGACTACTCTGTACAATATCGATATAGGGACAACAGAAGAAACTCCAAGAGTCAAAGAGTTAAGAGCAAAGCTGTTAAACAAGCACTAATTTGCTAAAGCAGCAAACATGTTCAGATGTATCCTTTGTGCGTCATCCTTTGATACAGTTTTACTTCTGTTCAGGCACCTCAAATTAATTCATGCAATGTATTCTGGGAAAAATTTGAGACTAAAATGTGGTCAAATAGGATGTTGCTTGCAATTTTCAAGTTATTCTGGATTTAGAAGACATCTAATTAAGATACATGATCCTACTGACAACACATGTGTACCTCATGAAACCCCTTCCAACTATGACACTCAACTGCACAATCATTCTGAGTGCTTAAATGATGAAACACCCTCTACTTCATCACAATGCCAAAATGTTGAAGCAGGCCCTTCACTGTCAACTCACAGCAAAGATATGTGTGCCTCCATCATAGCCAAACTTTTGGGAAGCGGTGTACCAAATACTGTAGTTCTTTCTACAATTGAAAATTTACAGGAATTTGTGGAAGATTTGCAGTCTAATATTCAGGACCAAGTATTGAACTTACTTCCAGCTGACAATCCCTCTAGATCAGCCGTAGAAGAGCTTTTTAAAAGTATGGACAACCCTTTTAGCCAGTTGAATACGGATAGCAAATGGAAGAAGTATTTCAGGGAAAAATGGGATATTGTACAGCCAGTTGAACAGCGCCTAGGAGTAAGGTATGATACCAGACGAAATAGCAAAACTGGAACCTATGAGCAAGTTCCAATCAATGACAAGTTCATATATATTCCCATACTGAAAACACTCCAGTTCATTTTCAAGAATGAAAGTATTTGTGAGATGATGCAAACATGTACTCAGTGTGATAAATATGAGGACTTCTGTGATGGAAGCTACTTCAAAAGTCATCCTTTGTTTTCGAGTAGTAATTTTGCCCTTCAAATCCAACTGTACTATGACGACTTTGAGTGTGCAAATCCACTAGGTTCAAAAAAAGGTATACATAAAGTTGGCTGCTTTTACTTTATCCTTAGAAATCTTCCCCCCAGGGTGAATTCTGCCTTAATGAACATTCATCTTGTGTCATTGTTTCATGCACAAGATG

Function

NR:

description
uncharacterized protein LOC794378

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807855.1 True 2235 mRNA 0.41 5 13517683 13520737

Neighbor

gene id symbol gene type direction distance location
nfat5a nfat5 coding downstream 91022 13409573 ~ 13426661 (-)
LOC120564184 dynlrb2,LOC106573385 coding downstream 129697 13386741 ~ 13387986 (-)
LOC120564570 LOC104956524,LOC103371543 coding downstream 216361 13273770 ~ 13301322 (-)
tmem60 LOC104956518,LOC103371546 coding downstream 271509 13244209 ~ 13246174 (-)
LOC120564726 LOC103371554,LOC106926584,LOC106963159,LOC101069521 coding downstream 292641 13217937 ~ 13225042 (-)
si:dkey-234i14.6 LOC104941367,LOC101483377,LOC102290229,LOC105938209 coding upstream 151219 13671956 ~ 13682237 (-)
prpf18 prpf18 coding upstream 165461 13686198 ~ 13693332 (-)
cpt1b cpt1b coding upstream 189249 13709986 ~ 13722388 (-)
LOC120563649 LOC103364023,LOC104941359 coding upstream 202046 13722783 ~ 13726359 (-)
chkb chkb,LOC100699097,LOC106532760,LOC102775816 coding upstream 206451 13727188 ~ 13740100 (-)
G84585 NA non-coding downstream 73071 13434739 ~ 13444612 (-)
G84536 NA non-coding downstream 192425 13322182 ~ 13325258 (-)
G84528 NA non-coding downstream 245154 13271252 ~ 13272529 (-)
G84533 NA non-coding downstream 280822 13236651 ~ 13236861 (-)
G84532 NA non-coding downstream 282273 13235173 ~ 13235410 (-)
G84592 NA non-coding upstream 123680 13644417 ~ 13644848 (-)
G84597 NA non-coding upstream 163087 13683824 ~ 13685469 (-)
G84719 NA non-coding upstream 551896 14072633 ~ 14072948 (-)
G84751 LOC103368197 non-coding upstream 716845 14237582 ~ 14238451 (-)
G84752 LOC101063650,LOC106561215,LOC104965117 non-coding upstream 719784 14240521 ~ 14241054 (-)
LOC120564547 fbxl14,LOC103380143,LOC107388938 other downstream 132478 13325973 ~ 13385205 (-)
prr5a prr5,LOC103371545 other downstream 261590 13246828 ~ 13256093 (-)
G84530 LOC100696427,LOC106963151,LOC107104182,LOC107388919,LOC104956556,LOC102796452,LOC102202152 other downstream 286588 13230617 ~ 13231095 (-)
G84123 cat,LOC102293651,LOC102204975,LOC102775586,LOC102293936 other downstream 1373137 12141523 ~ 12144546 (-)
G84083 NA other downstream 1629285 11888027 ~ 11888398 (-)
mafb maf,LOC104941368,LOC104940469,LOC101071510,LOC101484138,LOC103380135,LOC102219741,LOC106520304 other upstream 53094 13573831 ~ 13618786 (-)
zgc:77752 NA other upstream 510367 14031104 ~ 14037716 (-)
LOC120564470 NA other upstream 702460 14223197 ~ 14236952 (-)
LOC120563775 cacna2d1,LOC104952157 other upstream 981159 14501896 ~ 14558228 (-)
si:ch1073-390k14.1 LOC103375950 other upstream 1441123 14961860 ~ 14967783 (-)

Expression


Co-expression Network