slc28a1 (slc28a1,LOC108230093,LOC106514348)



Basic Information


Item Value
gene id slc28a1
gene name slc28a1,LOC108230093,LOC106514348
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 16792154 ~ 16803322 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039807928.1
GCCATGGGCCGCTTGAAACGTTAGCATGCACCTCAAAATAAGGCGAAATGCTATTTATTGTATCCAGTGGCTCAGCTGATATGAACGTTGGCATTATTGTATGTGGTCAGAGAGCGTTCCTGTTGGCTGTTCTGCCCACGTATTGCCCGTGcgacagagaggggagaaggagagctgcaggaagaggtcttCCTCCTACAGATAAGCTCATTCATGATTAATCTGCTATGTATCCGCCTTTATTATCACatattggctttaaaagctcAAAGTCAGACCCAATGACTTCATATCTGTTAACAAGAATTCACATCTTATCATCTGTTGCTCCAGTAATTTGTCAAACTTGCTTAACATCACGTCTAATCAAATGTTGCTTTATGACTCATTACATTATTTCTGTTGTATTATCACACTATGTGTACTTCCTGGGACAGATACATAACACTTctgttattaatgattaattgtTTCATAGAGGGCAGACTAGGTTTTCCCGCAGTGTGTTTTTTACAGCACAGCATTTGACAGCCAGGATTAGGAGGACGCACAATGACGGAAACCGACGGTGTCCAGCTCAAAGATTTAGCCCACACAAACGGAAATGGTGTGGACAACCAGGCTTTTGAAATAGAGGAGGACAACATTACTGATACTAGCAGCGTCAAAAGGcagacaaaaaagacaaaaaagggtTTGGGATCATACTTAAGCCAAGTTTCCAAGCCGATTAATGCCACAGAGGATTACATCAAGGCTCACTCAAAAACCTTCAAATACGTTGTACTGGGCTTACTTGGAGCAGGTTATGTGGCATACTTCATTGCAGCCTGTGTATTGGATTTCCAGAGGGCCATCGCTCTTGTAGTCCTAACCAGTTTGGCTGTTGTTGCTAAATCATATGAACTTTTGAAGGAGTACAAAGGACAAAGCATCAGTCAGTGTTTTAGACCCACAGTTAGATGCTTTAAATCTAACTTGAAATGGTTAAAATGgGTTTTCATCTTAGCAGCTGTGGTCCTGCTTGTTCTGTGGCTGGCTTTAGACACACGCCAGCGTCCTCAGCAGCTTATCTCGTTCGGAGGTGTGTGCATGTTCGTCGTGCTTGTGTTCCTCTTGTCAGCACACAGGACCGCGGTATCTTGGAGGCCTGTGTTTTGGGGTCTCGGGTTGCAGTTCTGTATTGGCCTTTTTGTTATAAGAACGGAGCCTGGACTCATAGCATTCGATTGGCTTGGAGCCCAAGTGCAGATATTCCTTAACTATACCAAAGAAGGGtcaggttttgtttttgggaATCTGATCGAAAACATTTTTGCCTTTCAAGCTTTGCCCATTGTTGTGTTCTTCAGCAGCGTGATGTCAGTCCTTTACTTTTTGGGGATAATGCAGTGGCTCATTCTAAAGATCTCATGGGTTATGCAGATAACGATGGGAACCTCTCCCACAGAGACCTTGAGTGTGGCAGGCAATATATTTGTTGGACAGACCGAAGCTCCGCTGCTGATCCGCCCTTATTTGAAGGACATGACCAAATCTGAGATCCATGCTGTTATGACTGGCGGATTTGCCACAATCGCAGGCAGCGTCATGGGGGCTTTCATCTCATTCGGGATTGATCCATCTGCCTTGATTTCAGCCTCTGTAATGGCTGCTCCTTGTGCCTTGGCCATCTCCAAACTTTCTTacccagagacagaggagagtcCCTTCAAGTCAGAGAAGAATATTAAAGTGGCTTGTGgGGATGAAAAAAACATCCTGGAGGCTGCTAGCAGTGGAGCATCTGCTTCAATAGGTCTTGTTGCTAACATTGCAGCAAATTTGATAGCCTTTCTTGCCATCCTTGAGTTCATAAATAATGCTTTGATTTGGCTTGGCAGTATGGTGGGATATCCTGAAATCACATTTCAGATGATTTGCTCCTATGTATTCATGCCTGTGGCCTTTATGATGGGAGTACCATATGATGAGAGTTTCACTGTGGCTGAACTAATTGGCACTAAGCTCTTCCTCAATGAGTTTGTAGCTTATCAGAAACTGTCTGCACTGAAGATCAACAGACTCAACGGACTTGATGAAATTGTTGGAGGCAAAAGACAATGGATATCTgTCCGATCAGAAGTAATCACCACTTATTCTCTTTGTGGGTTTGCCAACTTCAGCTCACTGGGCATTATGATTGGAGGCCTATCCTCTATATGCCCATCCAGAAGAGGTGATGTCTCGTCTTTGGTGATGAGAGCTATGCTCACTGGGACTTGTGTATCTCTCATCAATGCTTGCATTGCAGGGATCCTCTTTGTTCCTCCACTTGACTGTGTGGAGCTGTTTAAGGCAACTGCTTTCAATGCCACAGATGCAAATTTACAAACTTGCTGTCAAGACCTCTTTAAAAGCACTATTAACAATGGGACCATCTTGTTTGAAGGATCATGGAGCACCGTAGCAAATGTCACTGTGTTTTTCTCTAAATGTTGTCAGTGCTGTGGTCTTTCTAATGTGGCAGTTTGTAATTAGAGGAGAAAAATACATATCAGTGTCTGGTTTTCTATTGTAGTTAATTACGTGCctgtatgtttgtatatttgtgttacagttaatgtaaaaatgtaaagccTATATGCATCATGTATTATATTGTAAATTAATTCAGATATTGGCTTTTATTTAAATCCAAAGATTAAAAGGACACACCTTCAGAAATATACCTCATGAAATATTCAGGCATCAAATGTTTGAATGTAAATATTTCAAATAGAATTGAGTGACTTAGTTATTTTGTTATTGATAATTATATATACAGtcatactttttaaaaaaataaaaacctatgAAAATGTCATCTATGCTTGGACACAAAtgttttacatatttattaaaaaaacatttgctgaCATGACATAACAAAGCACAcattgtaaaacacatttatttcttAATCGATCATTCatttactcactcactcatttaCAATTTTTCTTCACACTTaatgcacacataaacacaatacGGTTTGTTGGCATGACACCACACATTAACACCATTCGCTCCTTTGTCAATATTTCAACCTCATTTCAACCTCTTTTTTGAATTTTTCTATCATAAACAATCATGCAATTACAGTGATGTAAAGTAATGACAGCTGAAGTTTAAGAGCGGAGGACTTTGAAGATTCTCATTGATCATTAACCAATAATTTATTAAAGGAATTTCTAAAGA

Function


symbol description
slc28a1 Predicted to enable nucleoside:sodium symporter activity. Predicted to be involved in nucleoside transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC28A1 (solute carrier family 28 member 1).

NR:

description
sodium/nucleoside cotransporter 2-like isoform X3

GO:

id name namespace
GO:1901642 nucleoside transmembrane transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0005415 nucleoside molecular_function
GO:0001882 nucleoside binding molecular_function

KEGG:

id description
K11536 SLC28A; pyrimidine nucleoside transport protein

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039807928.1 True 3222 mRNA 0.40 19 16792154 16803322

Neighbor


gene id symbol gene type direction distance location
malt3 LOC104964024,LOC103357518,LOC102077990 coding downstream 15788 16766929 ~ 16776366 (-)
ankrd34c ankrd34c coding downstream 181251 16607362 ~ 16610903 (-)
idh2 idh2,LOC104917827,LOC105932345,LOC107100590,LOC103147849,LOC103466626 coding downstream 197968 16581508 ~ 16594186 (-)
sema4ba sema4b,LOC103368553,LOC100693140,LOC101470126 coding downstream 243130 16462555 ~ 16549024 (-)
LOC120563779 NA coding downstream 259713 16529442 ~ 16532441 (-)
si:dkey-24l11.2 LOC104946603 coding upstream 16992 16820314 ~ 16830164 (-)
pstpip1a pstpip1,LOC102789492 coding upstream 32010 16835332 ~ 16842414 (-)
rcn2 rcn2,LOC102789787 coding upstream 37787 16841109 ~ 16846133 (-)
isl2a isl2,LOC102787860,LOC102305078,LOC101486127,LOC102207021 coding upstream 110215 16913537 ~ 16918273 (-)
tmem266 tmem266 coding upstream 125419 16928741 ~ 16958417 (-)
G85428 NA non-coding downstream 4172 16784298 ~ 16787982 (-)
G85373 ctsh non-coding downstream 109266 16680151 ~ 16682888 (-)
LOC120564211 NA non-coding downstream 132838 16649841 ~ 16659316 (-)
G85361 rasgrf1,LOC108230026,LOC106514342,LOC106921433,LOC103147845,LOC101158694 non-coding downstream 136400 16654938 ~ 16655754 (-)
G85353 NA non-coding downstream 165205 16626731 ~ 16626949 (-)
G85436 NA non-coding upstream 5960 16809282 ~ 16809502 (-)
G85441 NA non-coding upstream 7752 16811074 ~ 16816147 (-)
G85453 scaper,LOC102788151,LOC107662441,LOC107688925 non-coding upstream 63805 16867127 ~ 16869163 (-)
G85460 scaper non-coding upstream 94362 16897684 ~ 16899795 (-)
G85462 scaper,LOC102788151 non-coding upstream 97842 16901164 ~ 16902321 (-)
trnah-gug_10 NA other downstream 27368 16764715 ~ 16764786 (-)
LOC120563869 frmd5,LOC104917831,LOC102299895,LOC106561170 other downstream 28436 16697095 ~ 16763718 (-)
G85321 NA other downstream 351189 16439374 ~ 16440965 (-)
st8sia2 fam174b,st8sia2,LOC100690985,LOC101474125,LOC102798331 other downstream 582968 16188853 ~ 16209186 (-)
chd2 chd2 other downstream 604818 16155984 ~ 16187336 (-)
G85435 NA other upstream 4734 16808056 ~ 16808416 (-)
fbxl22 fbxl22 other upstream 822689 17626011 ~ 17645520 (-)
ppcdc ppcdc other upstream 1058391 17861713 ~ 17877065 (-)
dennd4a dennd4a other upstream 1090531 17893853 ~ 17956629 (-)
trnaq-cug_6 NA other upstream 1123725 17927047 ~ 17927118 (-)

Expression



Co-expression Network