tubgcp6 (tubgcp6,LOC107089493)


Basic Information

Item Value
gene id tubgcp6
gene name tubgcp6,LOC107089493
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 22400749 ~ 22428938 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807938.1
TTTTGTCGAAGCCCCGCGGTAGATTGTGAATCAAGCGACTAGAGAgcaattagctagctagcgacaACATCTAATATGCTGGAACAAGAAACctttcaataataaaaatacattttgaagcagtgTAGGGGACCCATCTACTGGGTTTCACATGCTTGGTACACACAAGCTAGTTAAGCaggacagctaacgttagcgttagctgGCTAGGTGATCCGTGGGGGCTTGCTAATAACAAACGTTAGCATGCACTGGAAGGAACCTTTTGGGGTGGATGCAAGATTGAAACTGTCTGAATCAACGAAAAATACACCATCTCGAAGGCTGAGGTAACAGTGCCACCATGTACTCGAGCCTAAACAACCCAATGAAGTCCAgctgcaacagcagcagcatcactGAGCTGCTGGGTGCCCTGTGTGACTGCAGCCTGTCTGGGGTGTCATGGAAACGCCGTGCCCTGGGTGGAGTTTCAAGAGAAGGTTTCCGCAGAGCTCTCAAAAAACGTGCCTACGGTGCCCTGCTGTCTAAGCTATTTCAAGATGACACCAAAGGGTCTGCCTCAGGACTGAGTGCCACAGCCAATACACCGCCCAAAAACAAAGTTTTGATGATATGTTTTGACTTGCGGGTGGCAGGGTGCCGAGAGGAAGCAGAGCGTTTGGAGGAGCAGCTGGGGATGCTGTTGGATGGAGCATCCTCTGGCCTAAAGGAAGTAGACGCTGTCCTTGAGCTCTTGGTACATCTAGCTGGTTCGGCACCTCCACCCCCTACCTCTTTCATTAGGGACTATATGAGACGAGAGAGGCCTGTACTGCGGAGGCCTCAACCCTGGGGCTACCAGAGCGAGGAGCTTCAGAGGCTAGAGGCCCGGGCATGGAGTCTAGTGTGTGGGGAGGAATGGGGGACTTTAGAGAGTTTGTGTGGAACTCAGAAGTTGATGGATGCTCCTCCAGGCACAGGACTGCTGGCTCTGAGAACTAAATTAGAAGTGGAAGAAAGATTTGAGAGGGAGACCAGGATGACACTGTTTGGAGCACTGCAGCACACTCGCACCTCAGACATAGACATAAGACTGGACCTGCCTCCTGTTCCCAGTAATATTGATGTAACTGGGCTGGCTATACGGGTCCCCCCATGTATAGATCAGTCTGAGGATGAAGGTTTCCAGTCAGCTTCCAACATGACCCCAGACTCTCAGTCAGAGACCAGCCCCATACCAGACGTTGATATATGGGAGGCTCTTCGCACATTTGAGCCTGGAAGACGTCGCTGCTGGGAGTCTGTTGGCTGCCCACCAGGGAAAAGCGAGTCACTCTATCTaacagagggaggcagggaggccTTTGACCAGCTCTATCGTCTGTGGGAGGGGGAGATGAGGGTGGTCAGCACTGCTAcaccttctcctctcctcccgcTGCCCCTGGACTCTCAGGCACTACTGGTATTTGACCTCCTCAACGTCTTGATCGGGGTGGCATCCACGACCTTCCCTCTCAACCAGAGTGTTCAGTTTGATGTCAGACCTGGTGTGTGCGTGTCCGGAGCCTCTCCAGAGAGTGTGTCTCGTCTCTTGGGGGAGCTGGCCCAGTACGGCACCCACTACTTGAGGCTTAGTCGCTTTTCTCTGCCGAGTGCTGGAAAAAAAGGCCTAGTCTTTCAGGCTTTTACAGGTGGTCTGCGGAAGTATCTGCATTACTACAGGGCTTGCGTTCTCAGCACTCCACCCACCCTCAGCCTGTTGACTATTGGCTTCCTCTTCCGCAAAGTGGGCCGCCAACTAAGGTACCTGTCAGAACTGTGCTGCGTAGATGGGCCTTTGGGTGCAGGCCAGGCTACCTTCCCTGTGGGTGTTAAACTGCTGTCCTACCTGTACAATGAAGCACAGAATAACTGCAGCAACGAGAACTGCGCGGTCCTCCTGTCGCTGCTGAAGAGCAGCTGTGAACCTTATACACGGTTTGTGTCTGACTGGGTGTATAGCGGCGTGTTTCGGGATGTTTATGGAGAATTCATGATCCAGGTTAATGAGGACTATCTCGTCTTCAGAGACAAACACTTCTGGGTCCAAGGCTACACTCTGATCTCAAAGGATGTGGAGGATTGTGTGCCCATCTTCCTGAGAGACATTGCCAACGACGTGTATGTCTGTGGAAAGACCATCAACCTCCTTAAGATCTGCTGCCCGCAgCACTACATCTGCTGGTCGGAGCTGCCGGTGCCTCGCATTGCTGTCACCTTCTCCCTCCGGGAGGTGGAGGACATCGAGAGGGACTGTGCTGTGTACCGCGGACGCATGGAGCGGGTTGCTAAGCACAGCGCCATCAGCAGGGAGGAGCAAGCCCAGCGAGCAGAGCAGGCACGCCAGGAGCTGATCAATCAGGTCAGAGAGTCAGCGGCCAAAACCCTGGAGAGCATCCGCGGGCGCCAGGTGTCACAACGTCTGGCTGAGGAGGCCAAGAAGAAGGAGCGTTTTGAGGAGCTGAAACAGCACCTGGAGCAGGAgcaagagtGGCGAAGCGTAGCCACAAAGAAGCAGGAGGAGGATGACTTCAGCTTTGCCAGAGAGCTGAGGGACAGAGAAAAAAGACTACAAGCCCTCGAGGAGCAACTGGAGCAGAGAGCCAGGAAGGAGCTGATAGCTCAGTACAGCCGTCTGTCAGAGGATGCAGCTCGCAGAGAGAGACGGGCCATGTGGCGGGTGCAGCGAATGAGACTTGATGAACCCCGGGCTCAGTTCTTCATGCATGACAGGCAGCAGACTCAGGCAATGCTAGAGAAATATCCTTTAGGCCAGAAGAGACCTCCCATCAAAGTGTTTCCACCTGTTACCTCAGCACAACAGACTGCACTACAACCAACACTGgaatctcccactcagcatCTGTCTGAGCAGCAGCCAGCGGAGACTCAAGAATCTGATGGTGTATCACCTGACCCATCTTCACCTACCCTCACCCACCTTACAGTTAACCTCGCACTCATCTCTGAGAACGTTGACGTCAATGATTTTCTTCCTAAGTCACCAAATCCTAACAGTCAGCAGGTAGACATCGCCCTACAGGAGATTGGCTCTGACCTACCTGAAGTGTGTCCTACAGCACAGCTAGTAGACTATGACTTCAGTGCCCCCTTTAGTCCACTTGAAGGTATCACAGGTCAAGCCTCAGTCCAGCCCCAACCTCGCTGGGGACCTGCAATCCAGCCTGACTTGATCCAAAACCATCCCTCTTTTTCTCACATCCTCATAGGAGAGAACATGTCTCAAGTCCAGGATTGTCTCCCCAAAGCTAGCCCCTTTGGCCAACCCTCCAAATCCAGCTTTACGCTAGGCCAGTACACCCCAGAGGAGCTTCAGAATACATCTAAAGCAAGCATTTATGGACATCCCTCTCAAGCCTCAGTGCAGTTAGTAGATGGGAGTGGCTCTATGACTGACAACAAGCAGGCGGAAATTGCATCTGTGATCATTGAAATGGGGAATTTAGAAAGTAAAGAGGCAAATAAAGACAATGATGTGCTTGATGCAGCTTTGTCCACCACACCAGAAGAAAGTGGCAAGGGTAATTGTCGTTACAAAGCAGTGACAAGTCTTTCTGACTGTGGTGGGATTGAGCCACCTGATGCAAATCCTAACCCAAGCACTCAAGACCGCAGCTCAGATGCTCAAGATAAAGCTGGTGATAATAATTATTTGCCAAATGTTCATCTCCCCAGTGCTCGCCTTAAAGCTGGAGAGCTGGTTTTAGATGTCGTTGCCCAGCATTCTTTACCTAGAGTCCATGGGCATTCCTCTGATGCTCGCGTAAAGGTTGGACAACTTGTATCAGAGGTAACTGCTCCTCTTCCATCCCCTAACGTCCACGGTTATGCCTCAGATTCCCATATCAAAATTGGAGAACATATTTTGGAAGTTGATGCTTCTCTACCTTCCTCCAGTCTTCACAGTCAATCTTCTGATGCTCACATTAAAGTTGGGGAAAATGTTTCAGATATAGTTGCCCCTCTGCCCTTTCCAAACGTTCATGGTCACAGTTCAGATGCCCACATTAAAGTTGGAGAAAATATCTCAGATGTTGTCGTGCCACTTCCTGCTCCCAACATCCACGGTCACTCCTCTGATGCTAATATAAAAGTGGGCGAGTTTCTGTCTAACATACCTGAAGCAAGGCCTCGTGAGAGTAAACATGGGCATGCCTCAGACTGCATGCTTCAATCAGGCTGTGTGGTGTCTGGAACTGAACCCGCCTTGTCTGTTCTACCTGGAAGCTCTTATGGTCACTCCTCAGACTCAGGGTTAGGTGGTGGATGTGTAGTTTCAGGAGAAGAACCCAAACGTTCTCCTCTACCTGGCAGTGCTTATGGTCATTCTTCAGACTCAGGGTTAGGTGGTGGATGTGTAGTTTCAGGAGATGAACCCAAACGTTGTCCTCTACCTGGCAGTGCTTATGGTCATTCTTCAGACTCAGGATTGGGAGGTGGATGTGTAGTTTCAGGAGACGGACCCAAACGTTGTCCTCTACCTGGCAGTGCCTATGGTCATTCTTCAGACTCAAATTTAGGCGTTGGATGTGTTGTGTCCAAAACTGAACCACTTCCATCACAACTACCCGGCAGCACCTACGGCCACTCCTCTGATTCAACCCTGGGGGTGGGTTGTGTGGTGTTGGGGACAGAGCCACAAGCCTCTGCACTACCAGGCAGCACCTATGGCCACTCATCAGATTCTTCACTCGCAGTTGGGTGTGTGGTGAAGGGCAAAGGCAGCTTAAATCAGCAGAAGACAGACGACAATGAAGATGGCAGAgGTTCTAAGTCGGACAGCCCTGGTGAGCAGCTGGTTGAGTTCATGGGGTCCTGGGCAGCAGGCTTCGGTTTGTCCCCTGGAGAAAAGTCTGAGCAGGAATATCTCTTGGCTTTGTGTGCTCAGTACGAGGTGGAAAAATACGAAGACTGCTACAACCTAATGGCTTCGTCCCCAGAGTGTCAGCTGCTGAAGCAGGTAACTCGGGGACCCTGGGGCCTTCCTATGGACCACACACTCCGCAGAGCCACAGACACCACTGTTGTCCAACTCAGCGAGATGGTTTCTCTGCCAGTTCTGATAAAACAGGCCGTCACTACCCCACTGATCACACATGTGTCATTGGTGAACAAGGCGGTGGTGGACTACTTCTTTGTGGAGTTGGGGGTGGAGAGACACTTTGAGGCACTGCGCCACTTCCTGCTGATGGAGGATGGCGAGTTTGCACAGTCCCTCAGCGATCTGCTCTTTGAAAAGCTGGGCAGTGGCCAGACTCCCGGTGAGCTGCTGACCCCCCTGGTCCTGAACTCCATCCTCAGTAAGGCCCTGCAGTACAGCTTGCATGGGGACACCCCCTTAGCAGGTAACTTTACCTTCGCCCTGCGCTTCCTCCCGGAGACCTTCCACCCACACGCCCCCGATTCTCTCAACTGTCTGGAGCTCCGCTACAAGCATGAGTGGCAGCTTAATCGCATCATCACGTACTGCGCCGAAAACAAGTACAACCGTCTGTTCTCGTTCCTGCTGCAGCTCAAACACATGGTGTGGAGCCTCCGTGAGGTCTGGTTCCACCTCAAGAGAACAGCGCTGGTGAAAGGTGCAGGTCGCTCGGTGCAGTTTCGGCAGCTGCAGCTATACAGACACGAAATGCAGCATTTTGTCAAGGTGATCCAGGGATACATCGCCAACCAGATCCTGCAAGTGTCCTGGAGCGAGTTCACAGCCAAGCTGGCCACTGCCAACGACCTGGACGCCATTCACCGTACACATGCAGACTACCTCAACAGAGCCATCTTCAGGGGTTTGCTGACAGAGAAGGCAGCTCCGGTCATGAACATCATCCACAGCATCTTCAGCCTGATCCTCAAGTTTCGGGCCCAGCTGATCGCACAGCCCTGGGGCAGCCAGCAGGGGGAGGCAGTGCACCCAAGCTTTATTGCCATGCAGCAGTCGTACAACACCTTCAAGTATTACTCTCACTTCCTTTTCAAAGtGGTGACCAAGCTGGTGAACCGAGGCTACCAGCCTCATCTAGAGGATTTCCTTCTTCGCATCAACTTCAACAACTACTACAAAGACTCCTGAGCTGTGTACTGGTGTGTATGTTGTACATGAGCTTAGTGTGAGTACTTGACATAATACAGGCCATTTGTTAGATACTTGCAATGCACTGTTTACATCTTAGAGTCCCCTGTATCTGTCTATAAGACAGATAATCagaaatatataatacaataaatgtTAGTGTCGAAAATACATTAAGAAACCCACCTGTACTTTATATTAGGCCAtgaatttgaaatttaaattgtATGCAATTATGCAAAGTTTATGCAATCCATGTGCAGGATTTAATTAATGGCTAAAACTGTATGCTGCCAAAGTTTGTAATTAAGGTGAAGCTGATGCCTACTGTAATGTCTCACGATTACGTGTGCCTCCAGCTATGTAGATTTTAAGTGCATATAAATGAAGTGTCAATTGCATGTAAATACAATTGTTAAATAAATGCGCTATGTTCCTGTGT

Function

symbol description
tubgcp6 Human ortholog(s) of this gene implicated in microcephaly and chorioretinopathy 1. Orthologous to human TUBGCP6 (tubulin gamma complex associated protein 6).

NR:

description
gamma-tubulin complex component 6

GO: NA

KEGG:

id description
K16573 TUBGCP6, GCP6; gamma-tubulin complex component 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807938.1 True 6554 mRNA 0.51 26 22400749 22428938

Neighbor

gene id symbol gene type direction distance location
mov10l1 mov10l1 coding downstream 134952 22240065 ~ 22265797 (-)
szl LOC103380347,LOC103353239 coding downstream 163822 22234736 ~ 22236927 (-)
LOC120564446 prl coding downstream 167150 22230931 ~ 22233599 (-)
nell2a nell2 coding downstream 188909 22091533 ~ 22211840 (-)
twf1a twf1,LOC102795415 coding downstream 371676 22013911 ~ 22029073 (-)
plxnb2b plxnb2 coding upstream 2899 22431837 ~ 22554892 (-)
parvb parvb coding upstream 277948 22706886 ~ 22725459 (-)
hdac10 hdac10 coding upstream 297547 22726485 ~ 22735827 (-)
aplnr2 NA coding upstream 307437 22736375 ~ 22739778 (-)
pus7 pus7 coding upstream 317551 22746489 ~ 22757990 (-)
G87329 appl2 non-coding downstream 10533 22387995 ~ 22390216 (-)
G87320 nuak1 non-coding downstream 45553 22287944 ~ 22355196 (-)
G87254 NA non-coding downstream 294494 22105880 ~ 22106255 (-)
G87249 NA non-coding downstream 318211 22070958 ~ 22082538 (-)
G87232 NA non-coding downstream 392354 22005499 ~ 22008395 (-)
LOC120563633 NA non-coding upstream 148079 22577017 ~ 22682276 (-)
G87400 NA non-coding upstream 332247 22761185 ~ 22837866 (-)
G87464 NA non-coding upstream 720181 23149119 ~ 23149344 (-)
LOC120563856 NA non-coding upstream 769634 23198572 ~ 23224641 (-)
G87469 NA non-coding upstream 802300 23231238 ~ 23238532 (-)
LOC120564428 NA other downstream 33771 22347170 ~ 22366978 (-)
LOC120564778 LOC103358851,LOC101480430,LOC100706913,LOC102797593 other downstream 661405 21735006 ~ 21739344 (-)
G87140 NA other downstream 687195 21713042 ~ 21713554 (-)
dnajb9a dnajb9,LOC100706374,LOC102775779,LOC102215328 other downstream 1028240 21369531 ~ 21372509 (-)
LOC120563850 NA other downstream 1513123 20877668 ~ 20887626 (-)
parvg parvg other upstream 260223 22689161 ~ 22706296 (-)
LOC120564579 LOC103366737 other upstream 982572 23411510 ~ 23422457 (-)
G87538 NA other upstream 1065392 23494330 ~ 23498659 (-)
G87624 LOC103358853,LOC104921025 other upstream 1310044 23738982 ~ 23741190 (-)
LOC120563922 NA other upstream 1480231 23909169 ~ 23916202 (-)

Expression


Co-expression Network