cpt1b (cpt1b)


Basic Information

Item Value
gene id cpt1b
gene name cpt1b
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 13709986 ~ 13722388 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807977.1
GGGAGGACAGCTCTGATCTCACTACCTGAGGAAAGGCACACCAAGGGCACTGGAGTCACACAGAGTATACAAGCCTGAGAACAGAAGAATTTCACTGCCTCACTCACACAAACCAAAGTCACGGCTTTCATCTGCCTGGGTGGATTATACTGATTCTGTTCTGACAGTACTATCCAGACATGGCTGAAGCGCATCAGGCAGTGGGCTTCCAGTTCACTGTGCGCCCAGATGGTGTGGACGTTAAACTGAGTCAAGAGGTCATCAAAAACATCTACCTGTCTGGAGTGACAGCATGGGAGAAGCGAGCCATTCAATTCAAGaATGGTATATTGACTGGAGTCTATCCTGCCAGCCCGTCCAGTTGGCTGATAGTTGTGATCGCCATGATGAGTTCCTTGTATATCCATATAGACCCTTCTCTAGGAATGATTGACACAATCAAGGACAACCTACCACACAGAGACTATATATCAGTGCAAACTCGAGCGGTGCTGAGCACCATCCTGTTTGCCACTGGGCTGTGGCTGTTCCTCATCTACCTCTTGAGATACACTCTCAAAGCTCTACTCTCctaccatggatggatttttgaATCCCATGGAAAAATGAGCACATCTACCAAAGTGTGGCTGaGTCTGGTGAAGATGTTCTCTGGGCGCAGACCGCTGCTCTACAGTTTCCAGGCCTCCTTACCCAGACTCCCTGTGCCCAGTGTGGATGATACAATTCACAGGTACCTGGAGTCAGTCCGTCCTCTGCTGGACAGTGAACAGTACAGCCAAATGGAGATTTTGGCAACTGACTTTAAAAATTCCAAAGCAGCCCAGCTGCAGAGATATCTAATCCTAAAATCCTGGTGGGGGACAAATTATGTAAGTGACTGGTGGGAGGAGTACATCTACCTCAGGGGCAGGAGTCCTATCATGGTGAACAGTAACTTCTATATAATGGACCTCTTGTACTTGACCCCAACACACCGACAGGCTGCACGGGCAGGGAATGTGGTTCATGCCATGCTGCAGTACAGACGCAAACTGGAACGTGGTGAACTTGCACCGcTGAGGGCTTTGGGGACCGTTCCTATGTGTTCCACTCAGATGGAAAGGATATTTAACACCACCCGCATCCCCGGGATTGAAACAGATACTGTTCAGCACCTGACTGACCGTAAGCACCTGGTTGTCTACCACAAGGGCCGTTTCTTCCAAGTGTGGCTGTACACTGGAGGGCGCCACCTCTTACCCAGTGAACTGGAGACACAGTTTCAAAGAATCCTCAACGATACATCAGAACCCCAGCTAGCTGAACTTAAATTAGCTGCCCTGACTGCAGGAAACAGAGTTCCATGGGCTCTGGCTCGGGTTAAATATTTCAGCCAGGGAAGAAACAAAGTGTCCCTAGACGCCATTGAGTCAGCTGCCTTCTTCCTGACACTAGATGACGAGCCGCAGGGTTATGACCCTGCAAACACCAAATCACTTGACAGTTATGCCAAGTCCCTGCTTCACGGAAAATGTTACGACAGGTGGTTTGACAAGTCTTTCACCTTGATTTCTTATCCAAATGGAAAAATGGGTGTAAATGCTGAACATTCTTGGGCTGATGCGCCAATTGTAGGACATATGTGGGAGtATGTCCTTGCAACAGACTGCTTCCATCTTGGCTACACAGAGGAGGGACACTGTAAAGGGGATGTGAACAAAGGCCTGCCTCATCCCACTCGACTACAGTGGCAGATTCCAAAGGAGTGCCAAGACGTCATCGAGACTTCCTACCTGTCAGCCAAGCAGATAGCTGATGACGTGGACTTCCATGGCTATCTGTTCACTGAGTTTGGGAAAGGACTGATCAAGAAGTGCAGAAGCAGTCCTGATGCCTTCATTCAGCTGGCCCTGCAGCTGGCACAGTTCAGGGACCAGGGAGTGTTTTGTCTGACGTACGAGTCATCAATGACTCGCATGTTCAGAGATGGTCGGACAGAGACGGTACGCTCCTGCACTTCTGAGGCTGTTGCATTTGTCAGAGCTATGGAGGATGCAGGTGCAACAAATGCCCAGAGACTTGCCCTGTTTCGGAAGGCAGCAGATAAGCATCAACACATGTATCGTCTGGCCATGACTGGCTCTGGTATCGACCGTCACCTCTTCTGTCTCTACATTGTGTCCAAATACCTTGGTGTCGACTCGCCATTCCTTAAGAAGGTGCTTTCAGAGCCCTGGAAGTTGTCTACCAGCCAAACTCCGCAGCAGCAGCTTAATTTAGTTGACATCAACAAATTCCCTAAATATGTGGGTGCTGGTGGTGGATTTGGCCCAGTAGCTGATGATGGTTATGGTGTGTCTTATATAATTGTTGGGGAAAACCTCATCACATTCCACATCTCTAGCAAGTTCTCCAGTCCTGACACAGACTCATGCCGGTTTAGTCAGCACATTCGTAAGGCCATGCTGGATATCCAAGCACTTTTCAAGCCTGAAAATGATAAGAAGACGGTGGAGCACACTGAGCATGTACAGCTGGAAAATGGGAAAAAGCACATATAACAGACACTGTGATGAGTGGTATGCTGGATTTGGCTCCTCACATACAACCGGAGTCTCTTTGTCATGCTTCAgccataaaaagaaaacaaagttcTGGTGACAGGTTGCACTTAGGAtctttttgctttttcagtGGGTCACATTATATGAGCTGGTCATTCCACTCAGCCAGACTAAAGGCATAATGTTACTTCTctaatttatttctattttatattgtaCCTTCCAGAGCTGTTGATTTGGTGCTGCGGGAAAGATGTAATCTTTCAAAGTTTGTTTCTTCTCCCTTTTTGTCAGTTTatgccatatactgtatataaagctAATCTAATCTGAAAATATGTCTGCTTAAAGAACTCAGTACTGTTTGAAACTA

Function

symbol description
cpt1b Predicted to enable carnitine O-palmitoyltransferase activity. Acts upstream of or within response to (R)-carnitine and response to bacterium. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Is expressed in female organism and liver. Orthologous to human CPT1B (carnitine palmitoyltransferase 1B).

NR:

description
PREDICTED: carnitine O-palmitoyltransferase 1, muscle isoform isoform X2

GO: NA

KEGG:

id description
K19523 CPT1B; carnitine O-palmitoyltransferase 1, muscle isoform

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807977.1 True 2919 mRNA 0.47 19 13709986 13722388

Neighbor

gene id symbol gene type direction distance location
prpf18 prpf18 coding downstream 16654 13686198 ~ 13693332 (-)
si:dkey-234i14.6 LOC104941367,LOC101483377,LOC102290229,LOC105938209 coding downstream 27749 13671956 ~ 13682237 (-)
LOC120563596 LOC794378,LOC106676715 coding downstream 189249 13517683 ~ 13520737 (-)
nfat5a nfat5 coding downstream 283325 13409573 ~ 13426661 (-)
LOC120564184 dynlrb2,LOC106573385 coding downstream 322000 13386741 ~ 13387986 (-)
LOC120563649 LOC103364023,LOC104941359 coding upstream 395 13722783 ~ 13726359 (-)
chkb chkb,LOC100699097,LOC106532760,LOC102775816 coding upstream 4800 13727188 ~ 13740100 (-)
LOC120563982 pgc coding upstream 35902 13758290 ~ 13761333 (-)
arsa arsa,LOC101072550 coding upstream 58989 13781377 ~ 13785751 (-)
rabl2 rabl2b,rabl2a,LOC102798136 coding upstream 299659 14022047 ~ 14027064 (-)
G84597 NA non-coding downstream 24517 13683824 ~ 13685469 (-)
G84592 NA non-coding downstream 65138 13644417 ~ 13644848 (-)
G84585 NA non-coding downstream 265374 13434739 ~ 13444612 (-)
G84536 NA non-coding downstream 384728 13322182 ~ 13325258 (-)
G84528 NA non-coding downstream 437457 13271252 ~ 13272529 (-)
G84719 NA non-coding upstream 350245 14072633 ~ 14072948 (-)
G84751 LOC103368197 non-coding upstream 515194 14237582 ~ 14238451 (-)
G84752 LOC101063650,LOC106561215,LOC104965117 non-coding upstream 518133 14240521 ~ 14241054 (-)
G84760 NA non-coding upstream 540315 14262703 ~ 14263115 (-)
G84761 NA non-coding upstream 541028 14263416 ~ 14263741 (-)
mafb maf,LOC104941368,LOC104940469,LOC101071510,LOC101484138,LOC103380135,LOC102219741,LOC106520304 other downstream 91200 13573831 ~ 13618786 (-)
LOC120564547 fbxl14,LOC103380143,LOC107388938 other downstream 324781 13325973 ~ 13385205 (-)
prr5a prr5,LOC103371545 other downstream 453893 13246828 ~ 13256093 (-)
G84530 LOC100696427,LOC106963151,LOC107104182,LOC107388919,LOC104956556,LOC102796452,LOC102202152 other downstream 478891 13230617 ~ 13231095 (-)
G84123 cat,LOC102293651,LOC102204975,LOC102775586,LOC102293936 other downstream 1565440 12141523 ~ 12144546 (-)
zgc:77752 NA other upstream 308716 14031104 ~ 14037716 (-)
LOC120564470 NA other upstream 500809 14223197 ~ 14236952 (-)
LOC120563775 cacna2d1,LOC104952157 other upstream 779508 14501896 ~ 14558228 (-)
si:ch1073-390k14.1 LOC103375950 other upstream 1239472 14961860 ~ 14967783 (-)
G85014 ppp6r2,LOC103370604 other upstream 1343651 15066039 ~ 15073350 (-)

Expression


Co-expression Network