LOC120563649 (LOC103364023,LOC104941359)


Basic Information

Item Value
gene id LOC120563649
gene name LOC103364023,LOC104941359
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 13722783 ~ 13726359 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807980.1
GAAAGAACTCCACTGCTCAAAGATCGAGGGACACTCCTGAATCGACCGAAACTGCTGCAAAACCAACAGAGCATGTGACGGTGAGAGCTGCAGCAGGGAAAAGGAGACGAGCAGGCGGTACATGGACTAAACTGTTCTGTCCTCTACTTCTCCATTGCAGTGGCTGCTTGGAATTCTTTAGGGGGCTCGTCTTCCCGTTTTATGGAGCATTAACAATGTCACTCTGAATGTGTGAGAGGTGCATTGCATTTTTATACCTTTGGAGTTTTACCAAATAATATATGGCACAGGCAGTATTAAAACTGTTGTAATGGGCTAAACTTTAATCCAAACAACACTGTCAGTGAGATGAATTCTCTAAGGCAACATGTTGTGACAGTATTAGAGTGGATAAGCTTATGGCTGAAATGTGTTCTTACAAGACTTTGGGGAGCTTTTCCAGCAGTCAAAAGTCAGATAGTATCCACAGTTATTACAACTACAGGATCATGCAAAGCAGACTCAGAGGAGTGGAAAGCCAATGAGGCACTTTGCACCTATCACCCTGGAGATGGAGATGAAGCCATGGTTACAGTCCAAACTAGCACATGTGCATTCcatGTGGACCTTGGGAGACTTTCAGAGTGCAGCGAATACTTCCGAGCCTTGTCCAGGTCCAGAATGAGAGAGACCTCAGAGAGCCTCATCCACCTGGACCATGTGTCCTCCTCTGTATTCCACAATCTCCTTGAGTTCTCCTTCTATAATAAGTTTAAAGTCCCTCAGGAGGAGTTGGGCACACACATCCAGGTCAGCAGCTATCTCCTGGCTGAGGCCTTCCTCTCAAAGTGCCTGTCAGTCCTCGCAGATGAACTCAGCCCAGGAAACTGTTTGTCTTACCTGAGTCTGGCTCAGGAGATCTGCTCTGTGGAGCTGAAGCTGACAGTGTTCACCTACCTGAGTAGAAACCTACTGGAGCTGCCTCACCTCATCAAGTGTCTGAACGATGCAGAGAAGGACGAAGTTGTCCACCTGAGGATACAAGGAGACAGACATCTCTGCAGCCTTAGGAAGGAAAACCTGACTTCTTGGAACGACCCAGAAACAGAACGTGCCCGACATATCTTCACCCTGAAAGGGTCAGAGGACAACGGAGATTGGTATCCAGTTACAGAGCTTCCTTTCAGGGCTGACAAGTGGTGTTTTACTACAGTGGTCCTGAATAACTACCTGTACGTAATAGGAGGCTACCGGCAGCGTGTGAAGAGAGGCTGGGAGTTCAAGTTGGCTTCCTTAAGGTATAATCCCTTTACTCATGCATGGGCTACCACAGCTCCTCTGATTAAGCACAGACGGCATTTCAGTGCAGTGGCCTGTGAAGGCTGTATTTACGCTGTGGGAGGCTGGTACTTGGACTCATTGGTGACCCCAGACTCCAGCACAGCTCTTTATACAGCTGTAGAATGCTATGATCCGTGGGGGGACACATGGAgGTTTGTCTCCTCACTGCCGCTCACTGACTTCCAGTTCACCGTGTCCTTGTCCCATGACGTGCCCCTTGCCACTAGCCTTGGACACTGTCTCTATGTGTTGGGGAGCATCCAGAGGACTGGAGAGAAACTGCTGCTGCAGTACAACACGAGGCATGACTCCTGGTCTGAACTACTTCCCACCCTCACCAGAGCGGATGCAGACCTCCCTACTCTTTACTTCCTGGGTGCCACTGACAGgctggttgtgattggtgggaACAACTCAGGGAATGTGGTGACATCATTCTGTGTGCAATCACAGAGATGGGGACAGgtgCACAGGGCTGAGAAAGTGGCCTTAGCAGGACAAGGGGTGGTTGTAGGTGACCAGATCCTGATGCCAAGTATAGAGCACAACACTGTTGCAAGGATGGATCTCCAAACTCTCTCCCTCACagttcttcctcctcttcccatCTCCACCCAATATGAATCTGTCTTTtatctttacttttaatgttatAGTTTTGCTATACTGCACATATTTTGTGATATTTTTTGTAGCTGAATGTAAGGGGTGGAAGTAACAAAGTATTGTAACAAAGTCCTTtgtgtacttgtacttttattttagtatttttaaataccgttatttttttttaattgtctctTTTCTGGTTTATTCTAGTGAGGCAACACAGGAAGGTGGTTGTatatttataattaataatcAAAATCTGTTGTATGTGCAGGCTGCAAAGTGCGTCTATAGAAATGGAATTTACTGTCGATTTGGACATAAGGGTTCCTGTTGCAGATGTTGTTCCACTTATATGTATAAGTTgacatttaattcaatttattttgtagcctaaaGATGTTTTCCATTTTACAGTAGTATTATATATCATCATAACCTGTAACCAGTACTGTTTATTcagagtaggctacattttaactgacctactttttacttttattttagtaCATTTACCAACTCTGTTTATTAGACTGCTTTTTAAGAAAATTGATTTGGtgatgtgtgtgtacctgtatgTTCTGTATATTATGTGTCTTAATAGTCTCTGCTGTTCTCCCTCATATGTGAGATCCAAAATCTTGATGTTATTTTTCTCAGTTCATAAAGGTTATTAAGGGCTTAA
>XM_039807981.1
AAGAACTCCACTGCTCAAAGATCGAGGGACACTCCTGAATCGACCGAAACTGCTGCAAAACCAACAGTGGCTGCTTGGAATTCTTTAGGGGGCTCGTCTTCCCGTTTTATGGAGCATTAACAATGTCACTCTGAATGTGTGAGAGGTGCATTGCATTTTTATACCTTTGGAGTTTTACCAAATAATATATGGCACAGGCAGTATTAAAACTGTTGTAATGGGCTAAACTTTAATCCAAACAACACTGTCAGTGAGATGAATTCTCTAAGGCAACATGTTGTGACAGTATTAGAGTGGATAAGCTTATGGCTGAAATGTGTTCTTACAAGACTTTGGGGAGCTTTTCCAGCAGTCAAAAGTCAGATAGTATCCACAGTTATTACAACTACAGGATCATGCAAAGCAGACTCAGAGGAGTGGAAAGCCAATGAGGCACTTTGCACCTATCACCCTGGAGATGGAGATGAAGCCATGGTTACAGTCCAAACTAGCACATGTGCATTCcatGTGGACCTTGGGAGACTTTCAGAGTGCAGCGAATACTTCCGAGCCTTGTCCAGGTCCAGAATGAGAGAGACCTCAGAGAGCCTCATCCACCTGGACCATGTGTCCTCCTCTGTATTCCACAATCTCCTTGAGTTCTCCTTCTATAATAAGTTTAAAGTCCCTCAGGAGGAGTTGGGCACACACATCCAGGTCAGCAGCTATCTCCTGGCTGAGGCCTTCCTCTCAAAGTGCCTGTCAGTCCTCGCAGATGAACTCAGCCCAGGAAACTGTTTGTCTTACCTGAGTCTGGCTCAGGAGATCTGCTCTGTGGAGCTGAAGCTGACAGTGTTCACCTACCTGAGTAGAAACCTACTGGAGCTGCCTCACCTCATCAAGTGTCTGAACGATGCAGAGAAGGACGAAGTTGTCCACCTGAGGATACAAGGAGACAGACATCTCTGCAGCCTTAGGAAGGAAAACCTGACTTCTTGGAACGACCCAGAAACAGAACGTGCCCGACATATCTTCACCCTGAAAGGGTCAGAGGACAACGGAGATTGGTATCCAGTTACAGAGCTTCCTTTCAGGGCTGACAAGTGGTGTTTTACTACAGTGGTCCTGAATAACTACCTGTACGTAATAGGAGGCTACCGGCAGCGTGTGAAGAGAGGCTGGGAGTTCAAGTTGGCTTCCTTAAGGTATAATCCCTTTACTCATGCATGGGCTACCACAGCTCCTCTGATTAAGCACAGACGGCATTTCAGTGCAGTGGCCTGTGAAGGCTGTATTTACGCTGTGGGAGGCTGGTACTTGGACTCATTGGTGACCCCAGACTCCAGCACAGCTCTTTATACAGCTGTAGAATGCTATGATCCGTGGGGGGACACATGGAgGTTTGTCTCCTCACTGCCGCTCACTGACTTCCAGTTCACCGTGTCCTTGTCCCATGACGTGCCCCTTGCCACTAGCCTTGGACACTGTCTCTATGTGTTGGGGAGCATCCAGAGGACTGGAGAGAAACTGCTGCTGCAGTACAACACGAGGCATGACTCCTGGTCTGAACTACTTCCCACCCTCACCAGAGCGGATGCAGACCTCCCTACTCTTTACTTCCTGGGTGCCACTGACAGgctggttgtgattggtgggaACAACTCAGGGAATGTGGTGACATCATTCTGTGTGCAATCACAGAGATGGGGACAGgtgCACAGGGCTGAGAAAGTGGCCTTAGCAGGACAAGGGGTGGTTGTAGGTGACCAGATCCTGATGCCAAGTATAGAGCACAACACTGTTGCAAGGATGGATCTCCAAACTCTCTCCCTCACagttcttcctcctcttcccatCTCCACCCAATATGAATCTGTCTTTtatctttacttttaatgttatAGTTTTGCTATACTGCACATATTTTGTGATATTTTTTGTAGCTGAATGTAAGGGGTGGAAGTAACAAAGTATTGTAACAAAGTCCTTtgtgtacttgtacttttattttagtatttttaaataccgttatttttttttaattgtctctTTTCTGGTTTATTCTAGTGAGGCAACACAGGAAGGTGGTTGTatatttataattaataatcAAAATCTGTTGTATGTGCAGGCTGCAAAGTGCGTCTATAGAAATGGAATTTACTGTCGATTTGGACATAAGGGTTCCTGTTGCAGATGTTGTTCCACTTATATGTATAAGTTgacatttaattcaatttattttgtagcctaaaGATGTTTTCCATTTTACAGTAGTATTATATATCATCATAACCTGTAACCAGTACTGTTTATTcagagtaggctacattttaactgacctactttttacttttattttagtaCATTTACCAACTCTGTTTATTAGACTGCTTTTTAAGAAAATTGATTTGGtgatgtgtgtgtacctgtatgTTCTGTATATTATGTGTCTTAATAGTCTCTGCTGTTCTCCCTCATATGTGAGATCCAAAATCTTGATGTTATTTTTCTCAGTTCATAAAGGTTATTAAGGGCTTAA

Function

NR:

description
PREDICTED: kelch-like protein 42

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807980.1 True 2614 mRNA 0.44 9 13722783 13726359
XM_039807981.1 False 2521 mRNA 0.44 9 13722783 13726357

Neighbor

gene id symbol gene type direction distance location
cpt1b cpt1b coding downstream 395 13709986 ~ 13722388 (-)
prpf18 prpf18 coding downstream 29451 13686198 ~ 13693332 (-)
si:dkey-234i14.6 LOC104941367,LOC101483377,LOC102290229,LOC105938209 coding downstream 40546 13671956 ~ 13682237 (-)
LOC120563596 LOC794378,LOC106676715 coding downstream 202046 13517683 ~ 13520737 (-)
nfat5a nfat5 coding downstream 296122 13409573 ~ 13426661 (-)
chkb chkb,LOC100699097,LOC106532760,LOC102775816 coding upstream 829 13727188 ~ 13740100 (-)
LOC120563982 pgc coding upstream 31931 13758290 ~ 13761333 (-)
arsa arsa,LOC101072550 coding upstream 55018 13781377 ~ 13785751 (-)
rabl2 rabl2b,rabl2a,LOC102798136 coding upstream 295688 14022047 ~ 14027064 (-)
odf3b NA coding upstream 301539 14027898 ~ 14030995 (-)
G84597 NA non-coding downstream 37314 13683824 ~ 13685469 (-)
G84592 NA non-coding downstream 77935 13644417 ~ 13644848 (-)
G84585 NA non-coding downstream 278171 13434739 ~ 13444612 (-)
G84536 NA non-coding downstream 397525 13322182 ~ 13325258 (-)
G84528 NA non-coding downstream 450254 13271252 ~ 13272529 (-)
G84719 NA non-coding upstream 346274 14072633 ~ 14072948 (-)
G84751 LOC103368197 non-coding upstream 511223 14237582 ~ 14238451 (-)
G84752 LOC101063650,LOC106561215,LOC104965117 non-coding upstream 514162 14240521 ~ 14241054 (-)
G84760 NA non-coding upstream 536344 14262703 ~ 14263115 (-)
G84761 NA non-coding upstream 537057 14263416 ~ 14263741 (-)
mafb maf,LOC104941368,LOC104940469,LOC101071510,LOC101484138,LOC103380135,LOC102219741,LOC106520304 other downstream 103997 13573831 ~ 13618786 (-)
LOC120564547 fbxl14,LOC103380143,LOC107388938 other downstream 337578 13325973 ~ 13385205 (-)
prr5a prr5,LOC103371545 other downstream 466690 13246828 ~ 13256093 (-)
G84530 LOC100696427,LOC106963151,LOC107104182,LOC107388919,LOC104956556,LOC102796452,LOC102202152 other downstream 491688 13230617 ~ 13231095 (-)
G84123 cat,LOC102293651,LOC102204975,LOC102775586,LOC102293936 other downstream 1578237 12141523 ~ 12144546 (-)
zgc:77752 NA other upstream 304745 14031104 ~ 14037716 (-)
LOC120564470 NA other upstream 496838 14223197 ~ 14236952 (-)
LOC120563775 cacna2d1,LOC104952157 other upstream 775537 14501896 ~ 14558228 (-)
si:ch1073-390k14.1 LOC103375950 other upstream 1235501 14961860 ~ 14967783 (-)
G85014 ppp6r2,LOC103370604 other upstream 1339680 15066039 ~ 15073350 (-)

Expression


Co-expression Network