chkb (chkb,LOC100699097,LOC106532760,LOC102775816)


Basic Information

Item Value
gene id chkb
gene name chkb,LOC100699097,LOC106532760,LOC102775816
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 13727188 ~ 13740100 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039807982.1
ATGAAACCACAAAAGTGTACGCCAATAACGTAGCTGAAAACCAACTTCATTTCCCAGAAACCTTCAGCGTACGGGGAACTGACGTACAAAGTGTAGCAACGACCTTTCTTGAACTGTCCAATGAGCTTAGCATAAAATCGCGGAATTGAATTATGATTGGTCATTGAATACGCCAGTTCGACTCAGTGCAAATCCCCGGTCACTGCGCGTGCGATGAGTATAATAACAGTCATATGAATGTATGATGCGATTCAGATCTTTCAGCTATGTTTGGCTCTTCCGGTTAAGTAGCCTTACCGGTGAACTGCGTTTGTCAGCGAGTCCCTCTTGCCGTTACAGACCCATATTTCACACCGGTCTTCCTTTGCTCTTCGCACGGCATCTCACGATGCAGTCGAGTGGAAATGTGACCAGCAGTAGTTGCGGAGTGGAGGGCAGGAACAGAGCAGAGAAGCCAGGGCCGGAACTTTTCAACAACATCCCGACTGTCACAACAGAAGGTGTGGATCCTCCGGCGGAGAAGAAACGAGTAGGCAGAACGCTTGTCGTTAACGAGAGAAACTTGAGGACCCCGAGTCCCCTGTTTGGGGCCAACTGTGATGACGACTCGGAGGCAGAGTCTTTTCGGGATGGGAGAACCGAGGAGGTCGACCGGGACACCAGGGGAAGGGCGTTTGCTTGGTGCCGAGACTTTCTGTCAGGGTCGTGGAAGACCATCAAAGAGGGTGATTTTCAAATCAGCATCGTCAGTGGTGGACTGAGTAATCTGCTGTACCTGTGTAGTTTGCCTGACCGTGTGCCCTCTGTGGGAGAGGAACCTCGCCAGGTGCTCCTTAGAGTCTACGGTGCCATCTTACAGGGAGTGGACTCCCTGGTGTTGGAGAGCGTGATGTTTGCCATCCTGGCAGAACGAGCTCTAGGACCAAAACTTTACGGCATCTTCCCTGCTGGACGCTTAGAACAGTACCTGCCGAATACCCGCATGCGCACAGATCAACTTTCAGATTCGGCCATATCAGCTGAGATTGCTGTTAAGTTAGCACGTTTTCATGAAATGAGCATGCCCTTTAACAAAGAGCCTAAGTGGCTGTTTGGGACCATTGACAAATACATGGATCAAGTGATGAATCTTAATTTTGTACGTGAAGCACATGTGAAGAAGTACAAGAAGCTGATGAAGTTGGACCTGCCTGCTGAGCTGGATAGCCTCCGTGCGTTGCTGGCAGCAACTCCATCACCAGTGGTGTTCTGCCACAATGACGTCCAGGAAGGTAACATATTGATGCTGGAAGACAAGGACCACAACCTAACAGATAGACTCATGCTGATCGACTTTGAGTACAGCAGTTACAATTACAGGGGTTTTGACTTTGGGAACCATTTCTGTGAGTGGGTGTATGACTACACCTATAACCAGTGGCCCTTCTACAAAGCCACACCCGAGAACTATCCCACCAGAGAGCAGCAGCTTCATTTTATCAGACGTTATTTGGCAGAACAGAGAAGACACTCTGACATGACCTTGGACCAGACACAGATGGAAGAGGACCTGATAATTGAAGCTAACAGGTATGCATTAGCATCACATTTCCTCTGGGGGCTGTGGTCCATCATTCAAGCAAAGATATCCAAGATTGAGTTTGGATACATGGACTATGCCCAGAGTCGGTTTGATGCCTACTTCAAGCAAAAAAAGCTCTTCTCCTGATTTCGACCATTTTAATCAGAATgtaatgtctctttttttcaactATGTGTTCTTGAAACTTCAGTCCTATGCTGCAGCTATACTGCTTACGACAAGTAGTGCGGGGTGAAAGATAGACGTTTACATTTGAACGCAACGCAGGCAATCCTTTTTATTAAAGGACTTTCCCTATAGTGTGAAATTCTGTTAGAGCAGGTGTAGCTCTATAGCATTGAATGTAggtaatgtttttattgttaatcATTTGAAGAGCAAGGTCAATCTGATGGTCAGTTATTATAATGGACAATGCTGGCTGCCAGGGAATTCATTTCAGACTTTAAATCTTACTGTAATTTTGGTGTACTATACCAGTAGTTTTGAGTTCACAAggaagttttcttttctttttttatatctcATTGTTTGAGTGTTTGTAGTCATTCTACCTCACTTATTTCTTCTGATGTTCATTCTGCTTTAGCATTATTCTTTCAAGGTCCAATAAAGTTACACATTCAGCAAATTATTCCTCAAGGGCTATTTTATAAAGTATCTCTGTAGTCAACAATAATCTTAATTTAACTGTTAGAATGTGTGAGGCACTTAAATCAGTAATATTGTATCTACTAACTGTACATATCAGCTGCACTGTCTGCCCATATTTAATTTGGCTTGTATTACCTTTCGTCATCCATGTATCATTCTATACCAATAATATTATTCAGagccttttctgtttttgtctctgccAAGAATCATAACTTGGAATATCTaaacatttgtcatttttaccTATTGTATTAGGTAACTAAAATGTCCATTTGTTCACATGTATGCAACCACATCAACctggaagcttttttttttctcccatttttAATGATTTCGTGGATCTTATTAATTTGACTGTCTCCTGTATTTGATAGAATGTACCGCCGTCATAATGTCCTTGTGTTAACATCTGTTTACTCATGAAAAGAAACTAGAAGCTTA
>XM_039807983.1
ATTGCACTTACTCtgccagtcactgtggctcaagCAGAGAGTAGCTTTTCaaaactaaagttgatcaagtcatacctgaggtcaACCATGTCCTAGGAACGGATCACTGGCCTTGCCGTCATATCAATCACTCAACAGGGGAGCAGATTTCATGCGATAACATCATTGAagattttgcatcaaggaaggccagaaagACCCATATTTCACACCGGTCTTCCTTTGCTCTTCGCACGGCATCTCACGATGCAGTCGAGTGGAAATGTGACCAGCAGTAGTTGCGGAGTGGAGGGCAGGAACAGAGCAGAGAAGCCAGGGCCGGAACTTTTCAACAACATCCCGACTGTCACAACAGAAGGTGTGGATCCTCCGGCGGAGAAGAAACGAGTAGGCAGAACGCTTGTCGTTAACGAGAGAAACTTGAGGACCCCGAGTCCCCTGTTTGGGGCCAACTGTGATGACGACTCGGAGGCAGAGTCTTTTCGGGATGGGAGAACCGAGGAGGTCGACCGGGACACCAGGGGAAGGGCGTTTGCTTGGTGCCGAGACTTTCTGTCAGGGTCGTGGAAGACCATCAAAGAGGGTGATTTTCAAATCAGCATCGTCAGTGGTGGACTGAGTAATCTGCTGTACCTGTGTAGTTTGCCTGACCGTGTGCCCTCTGTGGGAGAGGAACCTCGCCAGGTGCTCCTTAGAGTCTACGGTGCCATCTTACAGGGAGTGGACTCCCTGGTGTTGGAGAGCGTGATGTTTGCCATCCTGGCAGAACGAGCTCTAGGACCAAAACTTTACGGCATCTTCCCTGCTGGACGCTTAGAACAGTACCTGCCGAATACCCGCATGCGCACAGATCAACTTTCAGATTCGGCCATATCAGCTGAGATTGCTGTTAAGTTAGCACGTTTTCATGAAATGAGCATGCCCTTTAACAAAGAGCCTAAGTGGCTGTTTGGGACCATTGACAAATACATGGATCAAGTGATGAATCTTAATTTTGTACGTGAAGCACATGTGAAGAAGTACAAGAAGCTGATGAAGTTGGACCTGCCTGCTGAGCTGGATAGCCTCCGTGCGTTGCTGGCAGCAACTCCATCACCAGTGGTGTTCTGCCACAATGACGTCCAGGAAGGTAACATATTGATGCTGGAAGACAAGGACCACAACCTAACAGATAGACTCATGCTGATCGACTTTGAGTACAGCAGTTACAATTACAGGGGTTTTGACTTTGGGAACCATTTCTGTGAGTGGGTGTATGACTACACCTATAACCAGTGGCCCTTCTACAAAGCCACACCCGAGAACTATCCCACCAGAGAGCAGCAGCTTCATTTTATCAGACGTTATTTGGCAGAACAGAGAAGACACTCTGACATGACCTTGGACCAGACACAGATGGAAGAGGACCTGATAATTGAAGCTAACAGGTATGCATTAGCATCACATTTCCTCTGGGGGCTGTGGTCCATCATTCAAGCAAAGATATCCAAGATTGAGTTTGGATACATGGACTATGCCCAGAGTCGGTTTGATGCCTACTTCAAGCAAAAAAAGCTCTTCTCCTGATTTCGACCATTTTAATCAGAATgtaatgtctctttttttcaactATGTGTTCTTGAAACTTCAGTCCTATGCTGCAGCTATACTGCTTACGACAAGTAGTGCGGGGTGAAAGATAGACGTTTACATTTGAACGCAACGCAGGCAATCCTTTTTATTAAAGGACTTTCCCTATAGTGTGAAATTCTGTTAGAGCAGGTGTAGCTCTATAGCATTGAATGTAggtaatgtttttattgttaatcATTTGAAGAGCAAGGTCAATCTGATGGTCAGTTATTATAATGGACAATGCTGGCTGCCAGGGAATTCATTTCAGACTTTAAATCTTACTGTAATTTTGGTGTACTATACCAGTAGTTTTGAGTTCACAAggaagttttcttttctttttttatatctcATTGTTTGAGTGTTTGTAGTCATTCTACCTCACTTATTTCTTCTGATGTTCATTCTGCTTTAGCATTATTCTTTCAAGGTCCAATAAAGTTACACATTCAGCAAATTATTCCTCAAGGGCTATTTTATAAAGTATCTCTGTAGTCAACAATAATCTTAATTTAACTGTTAGAATGTGTGAGGCACTTAAATCAGTAATATTGTATCTACTAACTGTACATATCAGCTGCACTGTCTGCCCATATTTAATTTGGCTTGTATTACCTTTCGTCATCCATGTATCATTCTATACCAATAATATTATTCAGagccttttctgtttttgtctctgccAAGAATCATAACTTGGAATATCTaaacatttgtcatttttaccTATTGTATTAGGTAACTAAAATGTCCATTTGTTCACATGTATGCAACCACATCAACctggaagcttttttttttctcccatttttAATGATTTCGTGGATCTTATTAATTTGACTGTCTCCTGTATTTGATAGAATGTACCGCCGTCATAATGTCCTTGTGTTAACATCTGTTTACTCATGAAAAGAAACTAGAAGCTTA

Function

symbol description
chkb Predicted to enable kinase activity. Predicted to act upstream of or within phosphorylation. Human ortholog(s) of this gene implicated in intellectual disability; megaconial type congenital muscular dystrophy; muscular dystrophy; narcolepsy; and recurrent hypersomnia. Orthologous to human CHKB (choline kinase beta).

NR:

description
choline/ethanolamine kinase

GO: NA

KEGG:

id description
K14156 CHK; choline/ethanolamine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039807982.1 True 2683 mRNA 0.43 11 13727188 13737175
XM_039807983.1 False 2541 mRNA 0.43 12 13727188 13740100

Neighbor

gene id symbol gene type direction distance location
LOC120563649 LOC103364023,LOC104941359 coding downstream 829 13722783 ~ 13726359 (-)
cpt1b cpt1b coding downstream 4800 13709986 ~ 13722388 (-)
prpf18 prpf18 coding downstream 33856 13686198 ~ 13693332 (-)
si:dkey-234i14.6 LOC104941367,LOC101483377,LOC102290229,LOC105938209 coding downstream 44951 13671956 ~ 13682237 (-)
LOC120563596 LOC794378,LOC106676715 coding downstream 206451 13517683 ~ 13520737 (-)
LOC120563982 pgc coding upstream 18190 13758290 ~ 13761333 (-)
arsa arsa,LOC101072550 coding upstream 41277 13781377 ~ 13785751 (-)
rabl2 rabl2b,rabl2a,LOC102798136 coding upstream 281947 14022047 ~ 14027064 (-)
odf3b NA coding upstream 287798 14027898 ~ 14030995 (-)
LOC120563866 LOC100700167,LOC108229827,LOC102796952,LOC103368207,LOC106520317 coding upstream 299329 14039429 ~ 14046318 (-)
G84597 NA non-coding downstream 41719 13683824 ~ 13685469 (-)
G84592 NA non-coding downstream 82340 13644417 ~ 13644848 (-)
G84585 NA non-coding downstream 282576 13434739 ~ 13444612 (-)
G84536 NA non-coding downstream 401930 13322182 ~ 13325258 (-)
G84528 NA non-coding downstream 454659 13271252 ~ 13272529 (-)
G84719 NA non-coding upstream 332533 14072633 ~ 14072948 (-)
G84751 LOC103368197 non-coding upstream 497482 14237582 ~ 14238451 (-)
G84752 LOC101063650,LOC106561215,LOC104965117 non-coding upstream 500421 14240521 ~ 14241054 (-)
G84760 NA non-coding upstream 522603 14262703 ~ 14263115 (-)
G84761 NA non-coding upstream 523316 14263416 ~ 14263741 (-)
mafb maf,LOC104941368,LOC104940469,LOC101071510,LOC101484138,LOC103380135,LOC102219741,LOC106520304 other downstream 108402 13573831 ~ 13618786 (-)
LOC120564547 fbxl14,LOC103380143,LOC107388938 other downstream 341983 13325973 ~ 13385205 (-)
prr5a prr5,LOC103371545 other downstream 471095 13246828 ~ 13256093 (-)
G84530 LOC100696427,LOC106963151,LOC107104182,LOC107388919,LOC104956556,LOC102796452,LOC102202152 other downstream 496093 13230617 ~ 13231095 (-)
G84123 cat,LOC102293651,LOC102204975,LOC102775586,LOC102293936 other downstream 1582642 12141523 ~ 12144546 (-)
zgc:77752 NA other upstream 291004 14031104 ~ 14037716 (-)
LOC120564470 NA other upstream 483097 14223197 ~ 14236952 (-)
LOC120563775 cacna2d1,LOC104952157 other upstream 761796 14501896 ~ 14558228 (-)
si:ch1073-390k14.1 LOC103375950 other upstream 1221760 14961860 ~ 14967783 (-)
G85014 ppp6r2,LOC103370604 other upstream 1325939 15066039 ~ 15073350 (-)

Expression


Co-expression Network