sycp3 (sycp3)


Basic Information

Item Value
gene id sycp3
gene name sycp3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 1195923 ~ 1203372 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808073.1
atgtataagGAAGAAAAACACCCTGAAGAAAAGTCAGAGAAAAAAGCGTTTGAGTTTATTCAAGAGGATGAAAAGAAAGAGCAGAGCTGCTCAGATGACAGCGTCAGAGATGATGAAACTCCAATAACGGACAAGCAGGGCAAGAAGAGACCCGCAGCAGACTTTGATGAGGAGGGGGTGACCCATGCTGTGggAAATGAGGTACAGTCCATGCTGGAGAGATTTGGAGCTGATATCAGCAAAGTGATGCAGGCCAAGAAGAAGCGTCTGGAGTGCTTGACGAAGAACTACATGAAGGGAAGCCAACACAAGCTGGAGCAGCTGTGGAACGTCTACCACGCTCAGAGgcaGAAGATAACTAGCCAGTACTCCCAGCAGGTGTCCTCAGCGCTGCAGCAGTGGGAGACAGAAGCCCAGCGAGCCGAGGAGCAGGAAGAGAAGCTCAACAATCTGTTCAGACAACAGCAGAAGATCCTGCAGCAGGCCCGAGTGGTTCAGAACCAGAAGCTGAAGACTGTCAGAGAGCTGTACGAGCAGTTTGTGAAGAACATGGAGGACATGGAGAAGAGCCACGACTCTTTCCTGCAGGGGGCGCAGCAAGAGCTGAGGAAGGAGATGGCCACGCTGCAGAAGAAGATCCTCATGGACACACAACAGCAGGAGATGGCCACAGTCCGTAAATCGCTGCAGTCCATGCTGTTCTAGCCTGCTGTTACCACGGCTACAGAGCTACTTCCTACTGTTAACGactgtcactgcccgatgtgagtcgagggcagatgtgagtcgcgcacgctcagatttaaactgtttacggcataacgagtcatactgaaatttgtgaaatcca

Function

symbol description
sycp3 Predicted to be involved in meiotic cell cycle and spermatid development. Predicted to be active in synaptonemal complex. Is expressed in germ line cell and reproductive system. Human ortholog(s) of this gene implicated in spermatogenic failure 4. Orthologous to several human genes including SYCP3 (synaptonemal complex protein 3).

NR:

description
synaptonemal complex protein 3

GO: NA

KEGG:

id description
K19528 SYCP3; synaptonemal complex protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808073.1 True 850 mRNA 0.51 9 1195923 1203372

Neighbor

gene id symbol gene type direction distance location
LOC120563572 NA coding downstream 1659 1181506 ~ 1194264 (-)
si:ch211-59o9.10 NA coding downstream 18053 1152252 ~ 1177870 (-)
LOC120563352 LOC102080071,LOC102210666,LOC102302880,LOC101466024 coding downstream 107250 1068789 ~ 1088673 (-)
LOC120564813 NA coding downstream 213560 982236 ~ 982363 (-)
LOC120564812 NA coding downstream 218915 976881 ~ 977008 (-)
zgc:101783 NA coding upstream 46425 1249797 ~ 1264054 (-)
LOC120563569 NA coding upstream 240255 1443627 ~ 1452280 (-)
chrm4b NA coding upstream 487997 1691369 ~ 1703414 (-)
nox5 nox5 coding upstream 586178 1789550 ~ 1859958 (-)
LOC120564319 NA coding upstream 588258 1791630 ~ 1794752 (-)
G81464 NA non-coding downstream 33256 1099698 ~ 1162667 (-)
G81475 NA non-coding downstream 63258 1129925 ~ 1132665 (-)
G81476 NA non-coding downstream 75683 1118308 ~ 1120240 (-)
G81459 NA non-coding downstream 129010 1065446 ~ 1066913 (-)
G81457 NA non-coding downstream 131086 1064530 ~ 1064837 (-)
G81499 NA non-coding upstream 33358 1236730 ~ 1237745 (-)
G81478 NA non-coding upstream 42651 1246023 ~ 1256519 (-)
G81496 NA non-coding upstream 43014 1246386 ~ 1301755 (-)
G81502 NA non-coding upstream 53397 1256769 ~ 1257934 (-)
G81526 NA non-coding upstream 183284 1386656 ~ 1408756 (-)
G81445 NA other downstream 150411 1004039 ~ 1045512 (-)
glsl NA other downstream 260579 806744 ~ 935344 (-)
LOC120563708 LOC106561532 other downstream 364179 719054 ~ 831744 (-)
LOC120563709 LOC103365992,LOC102289231 other downstream 396199 726856 ~ 799724 (-)
G81085 NA other downstream 633644 561663 ~ 562279 (-)
actr6 actr6 other upstream 1422 1204794 ~ 1235228 (-)
ambra1b ambra1 other upstream 43564 1246936 ~ 1768910 (-)
LOC120563578 LOC108241855,LOC108242154,LOC107380983 other upstream 142873 1346245 ~ 1374380 (-)
G81535 NA other upstream 267456 1470828 ~ 1472927 (-)
kcnj11l LOC103374924,LOC108251025,LOC106531031,LOC103466804,LOC106904500,LOC103148617,LOC102236473,LOC100711429,LOC101469628,LOC102296518,LOC102199411 other upstream 334767 1538139 ~ 1548184 (-)

Expression


Co-expression Network