LOC120563727 (LOC104940840,LOC103375251,LOC104940445)



Basic Information


Item Value
gene id LOC120563727
gene name LOC104940840,LOC103375251,LOC104940445
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 13147847 ~ 13152704 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039808101.1
TCAGACAATGGGGTCAAACCAAACCAACGACACACCGTAGCTAGCTAGTTGGTTAGTCCTCAacacaactagctagctagcgttaactTACTTCGCGTCTGGGCATTTCTTTATGTTTCACTGTGAAAGCAAGCACTTTAACCATGGACTGAGCTGACGTTACAATAACGACTTTCTTTCACCAAGACCAGCCGCTTGTAGTCATGTTTTAGCCGGCTATCTAGCTATTTATCTTGCTAACTAACACTAACGTCAACTGTTAGCTCGGGTGCTAACTGCTGTCATGTTCAACGTCAGCACAGAGAAGACTGAACGTTAAACGTTGCTCAACTTTcgtaacacaaaacaactaaaagcCACTACTTCGCTGCTAGAAAATAACCATTTTATGAGGGACTCAACTGAAGCTGCAACACTGCTGCTCCTAAAATGAGGAGACTGACCAAGAAGAAGGCTCTGACTCTGGTGAAGGAGTTAGACGCGTTTCCAAAAGTTCCCGAGAGCTATGTGGAGTCCACAGCCAGCGGTGGGACAGTGTCTCTGATAGCATTCACTCTCATGGCTGTCCTCGCCTTCCTGGAGTTCTTTGTGTACAGAGACACATGGATGAAGTATGAGTATGAGGTGGACAAAGACTTCAGCAGTAAGCTGAGGATAAATGTTGACATTACAGTGGCCATGAGATGCCAATATATAGGTGCAGATGTCCTGGATCTGGCAGAGAACATGGTTGCTTCTGATGGCTTAAAATATGAACCAGTCAACTTTGAGCTCTCCCCAGAGAGAAGATTATGGCACATGACACTTCTGCACATCCAGGAGCGTCTGAGAGTGGAGCACGCTCTCCAGGACGTACTTTTCAAGGCTGCAATGAAAGGAGCTCCTCCTGCTGAGCCTCAAAGTGAGGGCAGTCCCACGACCCTTAATGCCTGCAGGATACATGGACACCTGTATGTCAACAAGGTGGCAGGAAATTTCCACGTTACCGTTGGCAAGTCCATCCCTCATCCAAGAGGCCATGCTCATCTAGCTGCACTTGTCAGCCATGACACTTATAATTTCTCTCACCGGATTGACCATCTGTCCTTTGGAGAAGTGGTTCCTGGGATTATTAGCCCTCTAGACGGCACAGAGAAAGTCTCCGCTGAATCTAACCACATGTTTCAGTACTTTATCACCATTGTGCCCACCAAACTGAACACCTACAAGGTCTCTGCAGAAACACACCAGTACTCTGTCACTGAGCGGGAACGAGTGATAAACCATGCTGCAGGCAGTCATGGAGTCTCAGGGATCTTTATGAAATACGATATAAACTCACTAATGGTCAAAGTCACCGAGCAGCACATGCCTCTCTGGCAGTTTCTTGTCAGACTCTGTGGCATCATTGGAGGCATTTTCTCTACAACAGGCATGCTCCATGGTGTGATAGGATTCTTGGTTGATGTTATTTGCTGCCGTTTCCAAATGGGAATCTACAAACCTCTTAAGgAGGTTCCTCTGAATGAGCAGCCAAACAGTGACCCCTCGATTCCTCCAGAAAATGACGCTCAATAATGAGCTCAGCTGCAGCCGACTGTCAGCTCACCATCTCTGCCTAACCCACTAGACAGCAACGAGACGCCGGGAACATGTTTACAAGTTGTTTTATTATGGAATACCTGCTTTGTTCAGAAGTGTGTAAATAtttgtatcatttttttttgttaaattttaTTGGGTGGGTGTAGGATTTCTCCACCTGTGAAAGATCATAATCAATACCTCCAGTAACCATCTGTCACTTTCACTGGAAagccacacaggtgttttcacttagtTTGACTGTTCTCAGGGTTGTGTGGTCGTGTGCAAGCCTGATTGACAGATACAACATGTcttaacagatgaatgtgattCTGAGTTTTTTTCATGTAGTTTGGTGACCTCAGAAAACTCCCAGCATATCTCTGCTCAACGTCGAGCTGAAAAGAGGCCTAATCAGCTACAACAAACAAAAgacctgtgtgggtgtgcaggGGTTTTAAATTGTTCCACAAATGTGCCTGTGTGCAAATATGAGGCTGATTTGTTAAATAAAATCCACTTTCAACTTGA

Function


NR:

description
PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 2-like

GO: NA

KEGG:

id description
K20366 ERGIC2, ERV41; endoplasmic reticulum-Golgi intermediate compartment protein 2

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039808101.1 True 2097 mRNA 0.45 13 13147847 13152704

Neighbor


gene id symbol gene type direction distance location
LOC120564327 LOC104941984,LOC100534567,LOC102302869 coding downstream 121479 13016565 ~ 13026368 (-)
LOC120563354 LOC104941983,LOC103374494 coding downstream 132872 13002120 ~ 13014975 (-)
LOC120564144 LOC103374492 coding downstream 173438 12965964 ~ 12974409 (-)
LOC120564143 NA coding downstream 203611 12940996 ~ 12944236 (-)
si:dkey-103i16.6 LOC103374744,LOC101471570 coding downstream 216635 12914638 ~ 12931212 (-)
kxd1 kxd1 coding upstream 2707 13155411 ~ 13158096 (-)
sinhcaf fam60a,LOC107388928,LOC103376222,LOC104940447 coding upstream 6609 13159313 ~ 13166108 (-)
LOC120564344 LOC104940834,LOC103371551 coding upstream 14614 13167318 ~ 13187582 (-)
armc10 armc10 coding upstream 35773 13188477 ~ 13192744 (-)
LOC120563974 lrrc17 coding upstream 51972 13204676 ~ 13209541 (-)
G84378 NA non-coding downstream 101818 12977962 ~ 13046029 (-)
G84384 NA non-coding downstream 107401 12991027 ~ 13040446 (-)
G84376 NA non-coding downstream 163787 12972389 ~ 12984060 (-)
G84370 NA non-coding downstream 198924 12948661 ~ 12948923 (-)
G84369 NA non-coding downstream 199238 12948274 ~ 12948609 (-)
G84446 NA non-coding upstream 40565 13193269 ~ 13193706 (-)
LOC120563976 NA non-coding upstream 48239 13200943 ~ 13201663 (-)
G84532 NA non-coding upstream 82469 13235173 ~ 13235410 (-)
G84533 NA non-coding upstream 83947 13236651 ~ 13236861 (-)
G84528 NA non-coding upstream 118548 13271252 ~ 13272529 (-)
G84123 cat,LOC102293651,LOC102204975,LOC102775586,LOC102293936 other downstream 1003301 12141523 ~ 12144546 (-)
G84083 NA other downstream 1259449 11888027 ~ 11888398 (-)
ptpn9a ptpn9 other downstream 1886886 11173553 ~ 11260961 (-)
oaz2a oaz2,LOC104929548,LOC101470759,LOC102200097,LOC106531198 other downstream 2234630 10823286 ~ 10913217 (-)
LOC120564603 NA other downstream 2433002 10706219 ~ 10714845 (-)
G84530 LOC100696427,LOC106963151,LOC107104182,LOC107388919,LOC104956556,LOC102796452,LOC102202152 other upstream 77913 13230617 ~ 13231095 (-)
prr5a prr5,LOC103371545 other upstream 94124 13246828 ~ 13256093 (-)
LOC120564547 fbxl14,LOC103380143,LOC107388938 other upstream 173269 13325973 ~ 13385205 (-)
mafb maf,LOC104941368,LOC104940469,LOC101071510,LOC101484138,LOC103380135,LOC102219741,LOC106520304 other upstream 421127 13573831 ~ 13618786 (-)
zgc:77752 NA other upstream 878400 14031104 ~ 14037716 (-)

Expression



Co-expression Network