LOC120563763 (LOC100692956,LOC102798821)


Basic Information

Item Value
gene id LOC120563763
gene name LOC100692956,LOC102798821
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 17792647 ~ 17795907 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808153.1
GCAGGGTGCTATGATGCACGATAAAATATTTAGTAAGTAACGCAGCTCTACATACAAAGACCTACTGCACTGTGGTGTATTCTATTACTGTACTTATCTATCTACTGTGAAGTTCAACTTAAGAGCCTTGATCAGAACCGCAAGGGGGGCCGACTATTAAGACCAGCCTCCTTGTTTTGCACCAGATGTCCCTGGGAGAGCCAGAGCAGTGGCTGAAGGTAGAGCAGAGTGAGCATTTTTGTTGTCGTGATGGCCAGATGGAGTGTGTGGCGCAGCCCAATGATGATGCCCCTGTTCTGGATAGGAGAGCTGACAACAACAGGTGTGCGCTGCAGCAGCAGTATGCCGGTGGTCAGACAGGCGTActcagacagcagcagcattgtcAGGCCTTTCAGTGAGATTCCTGGACTGTGGAAGAATGGGGTGGCCAACTTGTACAATTTTTGGAAACTGGATGGCTTCAGAAACCTTCACCGCATCATGTTGCAGAACTTCAACACGTTTGGACCCATTTACAGAGAAAAAGTAGGTTATTATGAAAGCGTAAATATCATCAATCCTGAAGATGCTGCTATCCTGTTCAAAGCGGAGGGCCATTATCCTAAAAGGCTGAGAGTTGAAGCCTGGACATCTTACAGAGACTACAGGAATCGCAAATATGGAGTTTTACTAAAGGATGGAGAAGACTGGAGATCAAACCGTGTGATTCTCAACAAGGAGGTGATTTCCCCGAAGATGCTGGAAAACTTTGTGCCTTTGCTGGACGATGTGGGCCAGGATTTTGTGGCCAGAGTTCACAAAAAGATAAAGCGAAGTGGCCAGAAACAATGGACCACTGACCTCTCTCAAGAACTTTTTAAATATGCACTAGAGTCGGTGAGCTCAGTGCTGTATGGGGAGCGTCTGGGTTTGATGCTGGACTACATCGACCCTGAAGCTCAACATTTCATTGACTGCATCACCCTCATGTTCAAGACTACCTCACCCATGCTGTACATACCTCCTGCTCTGTTGAGGCAGATTGGAGCGAAGGTGTGGCGGGACCATGTGGAGGCTTGGGATGGGATATTCAGCCAAGCGGACCGCTGCATCCACAACATCTACAGGAAGTTACGTCAGGAAGCCGGCACTCCAAAGAAATACCCAGGAGTCCTGGCTAGCCTGCTCATGCTGGACAAGCTGTCCATTGAAGACATCAAGGCCAGCATCACTGAGCTAATGGCTGGAGGAGTAGATAcgactTCTATCACACTGCTGTGGACATTGTATGAACTAGCTAGGCACCCCAACCTCCAGGAGGAGCTGAGGGCAGAGGTGGCTGCAGCTCGGGCTGAAAGCCAGGGAGACATGCTGGAGATGCTGAAGCGGATTCCATTGGTCAAAGGAGCtttaaaggaaacactgagGTTACACCCAGTTGCAGTGAGCTTGCAAAGATACATAGCAGAAGATATCATTATTCAAAACTACCACATCCCAGCTGGGACTCTGGTCCAGTTAGGACTGTATGCAATGGGCAGAGACCCCAAAGTGTTTTTCCGTCCGGAGCAGTATCAGCCCTCCCGCTGGCTGAGGACAGAGACGCACTACTTCAGGAGCCTGGGCTTCGGCTTCGGCCCCCGTCAATGCTTAGGACGCAGAATAGCTGAGGCAGAGATGCAAATCTTCCTGATCCATATGCTTGAGAACTTCCGAGTGGAGAAACAGCGCCATGTGGAAGTGCAGAGTACCTTTGAGCTCATTCTCTTACCAGAGAAACCTATAATATTGACTTTGAAACCTGTACATACTAGTCGGTAACACAGCATTTGAGAGAAAAATTGTGGTGCATGATAAGCCAAGCTCATTTCTATAGACCTTTATCACAGTTAATTGTAAAGGGATTCACAAAGCACCGCAATAtaaacactaaataaaatatatatatgtattgtatattaCATAGTgagtaatatgaacaatgtttgAAAATGTGTACTCTGGAATGTACATATGCTTTATTCAACATGCATATGGTAAAAGTGTTGTGAAAAATATCCACCAGGGATGAATAAAACAATACAACTGATTCAAAA

Function

NR:

description
PREDICTED: cholesterol side-chain cleavage enzyme, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00498 CYP11A; cholesterol monooxygenase (side-chain-cleaving)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808153.1 True 2078 mRNA 0.47 9 17792647 17795907

Neighbor

gene id symbol gene type direction distance location
stra6 stra6,LOC102799117 coding downstream 51342 17724192 ~ 17741305 (-)
commd4 commd4 coding downstream 94080 17695464 ~ 17698567 (-)
neil1 neil1 coding downstream 97301 17691423 ~ 17695346 (-)
si:dkeyp-73b11.8 NA coding downstream 128284 17660281 ~ 17664363 (-)
usp3 usp3 coding downstream 136289 17642845 ~ 17656358 (-)
stoml1 stoml1 coding upstream 128 17796035 ~ 17799387 (-)
nr2e3 nr2e3 coding upstream 4796 17800703 ~ 17803827 (-)
hexa hexa,LOC102299697,LOC102797931 coding upstream 15644 17811551 ~ 17818935 (-)
c8h15orf39 NA coding upstream 50323 17846230 ~ 17856728 (-)
ints14 vwa9,LOC102797047 coding upstream 85501 17881408 ~ 17886727 (-)
G85711 NA non-coding downstream 50641 17741692 ~ 17742006 (-)
G85660 NA non-coding downstream 135276 17657145 ~ 17657371 (-)
G85613 acsbg1,LOC102779547 non-coding downstream 248242 17544155 ~ 17544405 (-)
G85601 LOC101478969,LOC102214964,LOC102308915,LOC100701437,LOC102780768 non-coding downstream 275480 17515903 ~ 17517167 (-)
LOC120563415 NA non-coding downstream 696884 17090105 ~ 17095763 (-)
G85799 NA non-coding upstream 33601 17829508 ~ 17834884 (-)
G85802 arih1,LOC107662282,LOC107591299 non-coding upstream 46193 17842100 ~ 17845786 (-)
G85806 NA non-coding upstream 92960 17888867 ~ 17892467 (-)
G85815 NA non-coding upstream 220200 18016107 ~ 18016774 (-)
G85910 LOC103141279,LOC103380252,LOC107097849,LOC106536919,LOC102790651 non-coding upstream 547635 18343542 ~ 18344341 (-)
fbxl22 fbxl22 other downstream 147127 17626011 ~ 17645520 (-)
G85435 NA other downstream 984231 16808056 ~ 16808416 (-)
trnah-gug_10 NA other downstream 1027861 16764715 ~ 16764786 (-)
LOC120563869 frmd5,LOC104917831,LOC102299895,LOC106561170 other downstream 1028929 16697095 ~ 16763718 (-)
G85321 NA other downstream 1351682 16439374 ~ 16440965 (-)
ppcdc ppcdc other upstream 65806 17861713 ~ 17877065 (-)
dennd4a dennd4a other upstream 97946 17893853 ~ 17956629 (-)
trnaq-cug_6 NA other upstream 131140 17927047 ~ 17927118 (-)
G85813 rpl4 other upstream 235101 18031008 ~ 18036276 (-)
lctlb lctl,LOC104967861,LOC107388717,LOC106956364 other upstream 245721 18041628 ~ 18047840 (-)

Expression


Co-expression Network