nr2e3 (nr2e3)


Basic Information

Item Value
gene id nr2e3
gene name nr2e3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 17800703 ~ 17803827 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808168.1
AAAGCCCCCTGACGACTCAGGCTCGCACTCATTCTggcacagagaaagaaagaagaagacaagTAGTGACTCTTTTGACCCCCCATTAAATCAGAAACAACCAGAAAATGGACAACAGCACTGGATCCATATCATCGAGCATTCCTGGAGTAACACTCTGATGACCTCTGAAGAAATTAGGCTCTAACTACAAGCTTTAGTAGAAAGAACTACAAATTCTATGTCTTTTGTGTTTTGGGGGCATTGCCATGTGTCAACACTTCacataaagaaaatgctttgaTCCAGCTTGCCAACTTCACAAATAGTACTTTATAAAGAAGAGGAAATTCGTCTGGGAGTAATCATCTAAAAACAGTTGATTACGTAAAGTTTAGCAATTACCCATCTCAAAATGGAGGACCACATGAGCAAAATTAACATGTTTTCTTCTGACATGTCTAATGACTTCACAGATGGACATCAAGCAGAAATCAGTTCAGTCCCAGATAAAGCACTTGACCATGGCCTGCTTTGTAATGTGTGTTCCGATTCAAGCAGTGGTAAACACTATGGTATCTATGCCTGCAACGGCTGCAGTGGCTTCTTCAAGCGCAGTGTGAGACGAAGACTCATTTACAGGTGTCAGGCTGGAACTGGCAGGTGCCCTGTTGACAAGGCTCATCGGAACCAATGCCAAGCTTGTCGACTAAAGAAGTGTCTCCAAGCTGGCATGAACAAAGATGCTGTGCAGAATGAGCGGCAGCCTCGAAGCACAGCACATGTCAGTCTAGACTCTATAAGTGTGGCCACTAAAAAGGAGCACCTGGCCACCACACAGGACATCACTTCCTCTGCCACCTACTCATCAGTCATCTGCAGACCTCTGATCACTTCCTCCGTCACCACCTCTGCCACCATACAGCCCTGCAGCAACCCCAATACCGTCCACCGCTTTATGGTCAGCCTACTGACTGCAGAGACCTGTGCAAAACTGGAGCCTGAGGACGTGGAGGAGAATATTGATGTGACCACCAATGATTCAGAGAGAGATCGGACTCCCTCTGACTGTCGTGTGTCCCCGTACGCCTCCAGCTGTTCAGAGAGTATATACGAGACATCGGCACGACTTCTCTTCATGTCTGTCAAGTGGGCAAAAAATTTGCCAGTTTTTGCTCACTTGCCATTTCGAGACCAGGTGATTCTCCTTGAGGAAGCTTGGAGTGAGATGTTCCTCTTGTGTGCCATCCAGTGGTCCCTGCCCATGGACAGCTGTCCTCTTCTGTCTCTGCCAGATCTTTCTCCCACACAGCAGGCCAAGATCAGCGTCCCCACAGCTGACCTGCGCATTCTGGAAGAGGTCTTTAATCGCTTTAAGGCCCTGGCTGTTGACCCTACTGAGTTTGCCTGCCTGAAAGCCATTGTACTATTCAAGCCAGAGACACGCAGCCTCAAAGACCCAGAGCAGGTGGAGAATCTGCAGGACCAGTCGCAGGTGTTGCTAAGTCAGCACATCCACTCAGAATACCCCAGCCAAAGTGCCAGGTTTGGGAGACTGTTACTTCTGCTGCCATCCCTCCATTTTGTGAGCTCTGAGAAAATAGAGAAGCTGTTCTTTCAAAGGACCATTGGCAGCACACCCATGGAGAAGCTGCTGTGTGACATGTTCAAAAACTAAGACACTAACTAAAACAAGCACACAGGGAAGCTGAACGACACCTTCAAGGAAAACGTAATAAACCAACCCTCAagcaacacattttctggctgtTTGTTTCACATATTCTGGGTATGACTTCAACATAACAGCCCTTTTTTACTGAAGACATTTTGAAATATCTCAGAAGGAAATGTTTTCCCACAATAGGTCAAAAAGCCTGTTGTAAAAAAGACCCATTAAAGTTTATGGCATTCTAATTAAATAAACATGCAGGTTTTGTTCAGTGGTATTACATGATTTAGTATTACAATTTTGTCATGAAGAACCACAGACATCACAATGTTTTGTGTAGGTGCTGAGTTTGAAGGAGAAGCATTTCTTTATTACAATATGATTatgaatatattttgttttcaatgtAAGTATTTGtcctaaataaaaatgaaaaatgtgta

Function

symbol description
nr2e3 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Involved in photoreceptor cell maintenance and retinal rod cell differentiation. Acts upstream of or within pineal gland development. Located in nucleus. Is expressed in several structures, including diencephalon; optic vesicle; presumptive diencephalon; presumptive neural retina; and retina. Human ortholog(s) of this gene implicated in enhanced S-cone syndrome and retinitis pigmentosa 37. Orthologous to human NR2E3 (nuclear receptor subfamily 2 group E member 3).

NR:

description
PREDICTED: photoreceptor-specific nuclear receptor isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08546 NR2E3, PNR; nuclear receptor subfamily 2 group E member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808168.1 True 2094 mRNA 0.45 8 17800703 17803827

Neighbor

gene id symbol gene type direction distance location
stoml1 stoml1 coding downstream 1316 17796035 ~ 17799387 (-)
LOC120563763 LOC100692956,LOC102798821 coding downstream 4796 17792647 ~ 17795907 (-)
stra6 stra6,LOC102799117 coding downstream 59398 17724192 ~ 17741305 (-)
commd4 commd4 coding downstream 102136 17695464 ~ 17698567 (-)
neil1 neil1 coding downstream 105357 17691423 ~ 17695346 (-)
hexa hexa,LOC102299697,LOC102797931 coding upstream 7724 17811551 ~ 17818935 (-)
c8h15orf39 NA coding upstream 42403 17846230 ~ 17856728 (-)
ints14 vwa9,LOC102797047 coding upstream 77581 17881408 ~ 17886727 (-)
megf11 megf11,LOC103353722,LOC102795465 coding upstream 128378 17932205 ~ 18006530 (-)
LOC120563782 rpl4 coding upstream 227121 18030948 ~ 18032194 (-)
G85711 NA non-coding downstream 58697 17741692 ~ 17742006 (-)
G85660 NA non-coding downstream 143332 17657145 ~ 17657371 (-)
G85613 acsbg1,LOC102779547 non-coding downstream 256298 17544155 ~ 17544405 (-)
G85601 LOC101478969,LOC102214964,LOC102308915,LOC100701437,LOC102780768 non-coding downstream 283536 17515903 ~ 17517167 (-)
LOC120563415 NA non-coding downstream 704940 17090105 ~ 17095763 (-)
G85799 NA non-coding upstream 25681 17829508 ~ 17834884 (-)
G85802 arih1,LOC107662282,LOC107591299 non-coding upstream 38273 17842100 ~ 17845786 (-)
G85806 NA non-coding upstream 85040 17888867 ~ 17892467 (-)
G85815 NA non-coding upstream 212280 18016107 ~ 18016774 (-)
G85910 LOC103141279,LOC103380252,LOC107097849,LOC106536919,LOC102790651 non-coding upstream 539715 18343542 ~ 18344341 (-)
fbxl22 fbxl22 other downstream 155183 17626011 ~ 17645520 (-)
G85435 NA other downstream 992287 16808056 ~ 16808416 (-)
trnah-gug_10 NA other downstream 1035917 16764715 ~ 16764786 (-)
LOC120563869 frmd5,LOC104917831,LOC102299895,LOC106561170 other downstream 1036985 16697095 ~ 16763718 (-)
G85321 NA other downstream 1359738 16439374 ~ 16440965 (-)
ppcdc ppcdc other upstream 57886 17861713 ~ 17877065 (-)
dennd4a dennd4a other upstream 90026 17893853 ~ 17956629 (-)
trnaq-cug_6 NA other upstream 123220 17927047 ~ 17927118 (-)
G85813 rpl4 other upstream 227181 18031008 ~ 18036276 (-)
lctlb lctl,LOC104967861,LOC107388717,LOC106956364 other upstream 237801 18041628 ~ 18047840 (-)

Expression


Co-expression Network